HHsearch alignment for GI: 254780614 and conserved domain: PRK13443

>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional.
Probab=100.00  E-value=3.6e-33  Score=227.85  Aligned_cols=131  Identities=27%  Similarity=0.443  Sum_probs=112.3

Q ss_pred             CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf             44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r    3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL   82 (135)
Q Consensus         3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il   82 (135)
T Consensus         1 Ma~t~~leiVtPe~~v~sg~v~~V~~Pg~eGe~GILp~HaPlit~L~~G~l~i~~~~~-~~~~~VsGGF~eV~~~~vtIL   79 (136)
T PRK13443          1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAEGPSG-TQEYAVTGGFAEINATSISVL   79 (136)
T ss_pred             CCCCEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCEEEEEECCEEEEEEECCC-EEEEEECCEEEEEECCEEEEE
T ss_conf             9984699999998136754478999976863733020421027887036999997995-299999352999989999999


Q ss_pred             EECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf             8112207685999999999999999650788899---999999999999998860
Q gi|254780614|r   83 SETILPMDNACLQALEKRIDEVCSDLNNICDVDQ---RFQMEQLLVDLSCLRRRI  134 (135)
Q Consensus        83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~---~~~~~~~~~~l~~~r~~~  134 (135)
T Consensus        80 ae~A~~~~eid~~~~e~~i~~Ae~~~~~~~~~~~~~Did~A~k~la~~~~~~~~~  134 (136)
T PRK13443         80 AEKAIPVEELTGAVLDEFIAEARELASVALPENEPGDVDDAAKTLADMLALGAHM  134 (136)
T ss_pred             EHEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             0411886789999999999999999986355415788999999999999877543