HHsearch alignment for GI: 254780614 and conserved domain: PRK13443
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional.
Probab=100.00 E-value=3.6e-33 Score=227.85 Aligned_cols=131 Identities=27% Similarity=0.443 Sum_probs=112.3
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf 44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il 82 (135)
T Consensus 1 Ma~t~~leiVtPe~~v~sg~v~~V~~Pg~eGe~GILp~HaPlit~L~~G~l~i~~~~~-~~~~~VsGGF~eV~~~~vtIL 79 (136)
T PRK13443 1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAEGPSG-TQEYAVTGGFAEINATSISVL 79 (136)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCEEEEEECCEEEEEEECCC-EEEEEECCEEEEEECCEEEEE
T ss_conf 9984699999998136754478999976863733020421027887036999997995-299999352999989999999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 8112207685999999999999999650788899---999999999999998860
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICDVDQ---RFQMEQLLVDLSCLRRRI 134 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~---~~~~~~~~~~l~~~r~~~ 134 (135)
T Consensus 80 ae~A~~~~eid~~~~e~~i~~Ae~~~~~~~~~~~~~Did~A~k~la~~~~~~~~~ 134 (136)
T PRK13443 80 AEKAIPVEELTGAVLDEFIAEARELASVALPENEPGDVDDAAKTLADMLALGAHM 134 (136)
T ss_pred EHEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 0411886789999999999999999986355415788999999999999877543