HHsearch alignment for GI: 254780614 and conserved domain: PRK13449
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional.
Probab=99.93 E-value=1.5e-25 Score=180.19 Aligned_cols=86 Identities=41% Similarity=0.611 Sum_probs=80.3
Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCC-EEEEECCCCEEEEECCEEEEE
Q ss_conf 4402699984886375221319999605733577689800266706880799626884-035422675699949969999
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEE-IHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~-~~~~~V~gG~~~v~~~~v~Il 82 (135)
T Consensus 1 M~~l~leiVTPe~~v~~g~v~~V~~p~~~G~~GILp~H~Plit~L~~G~v~i~~~~g~~~~~~~v~gGf~eV~~n~vtIL 80 (88)
T PRK13449 1 MAKLHFELVTPERLLRSGEVHMVVVPGTEGDFGVLAGHAPFMTTLRDGEVTVYSSEGAKPEVIHVQGGFAEVNEKGLTIL 80 (88)
T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEEECCCEEEEECCEEEEE
T ss_conf 97479999999824886278899997782461125898200888648589999969987999999764999979999999
Q ss_pred EECCEEH
Q ss_conf 8112207
Q gi|254780614|r 83 SETILPM 89 (135)
Q Consensus 83 ~~~a~~~ 89 (135)
T Consensus 81 ae~Ae~a 87 (88)
T PRK13449 81 AEHAVEA 87 (88)
T ss_pred EHEEEEC
T ss_conf 7503996