Query gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs 108 out of 1581
Neff 7.1
Searched_HMMs 39220
Date Sun May 29 22:15:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780614.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13446 atpC F0F1 ATP synthas 100.0 1.6E-34 4.1E-39 236.3 14.8 127 3-130 1-127 (135)
2 PRK13450 atpC F0F1 ATP synthas 100.0 5.4E-34 1.4E-38 233.0 14.6 113 4-116 1-113 (132)
3 PRK13448 atpC F0F1 ATP synthas 100.0 1.6E-33 4E-38 230.1 16.2 129 4-134 1-129 (135)
4 PRK13452 atpC F0F1 ATP synthas 100.0 1.9E-33 4.9E-38 229.5 16.3 110 5-115 4-113 (145)
5 PRK00571 atpC F0F1 ATP synthas 100.0 2E-33 5.1E-38 229.4 15.3 118 4-121 1-118 (135)
6 PRK13443 atpC F0F1 ATP synthas 100.0 3.6E-33 9.1E-38 227.9 14.5 131 3-134 1-134 (136)
7 CHL00063 atpE ATP synthase CF1 100.0 7.8E-33 2E-37 225.7 14.9 115 6-121 2-116 (133)
8 PRK13445 consensus 100.0 2E-32 5.2E-37 223.1 15.5 127 5-134 1-127 (132)
9 PRK13444 atpC F0F1 ATP synthas 100.0 2.5E-32 6.4E-37 222.6 14.6 110 3-113 2-111 (127)
10 PRK01474 atpC F0F1 ATP synthas 100.0 7.1E-32 1.8E-36 219.7 13.3 109 3-111 1-111 (112)
11 COG0355 AtpC F0F1-type ATP syn 100.0 2.9E-31 7.3E-36 215.9 16.3 129 3-132 1-131 (135)
12 PRK00539 atpC F0F1 ATP synthas 100.0 5.9E-30 1.5E-34 207.8 13.7 118 7-124 2-119 (130)
13 PRK13451 atpC F0F1 ATP synthas 100.0 2E-29 5E-34 204.5 12.9 100 7-107 1-100 (101)
14 PRK13442 atpC F0F1 ATP synthas 99.9 2.5E-27 6.4E-32 191.3 11.4 89 5-93 3-91 (91)
15 PRK13449 atpC F0F1 ATP synthas 99.9 1.5E-25 3.9E-30 180.2 10.8 86 4-89 1-87 (88)
16 KOG1758 consensus 99.9 2.4E-24 6.2E-29 172.7 14.8 127 4-133 26-154 (159)
17 pfam02823 ATP-synt_DE_N ATP sy 99.9 7.5E-23 1.9E-27 163.4 10.6 80 7-86 1-80 (80)
18 TIGR03166 alt_F1F0_F1_eps alte 99.9 7.5E-22 1.9E-26 157.1 15.1 119 8-131 1-120 (122)
19 PRK13447 F0F1 ATP synthase sub 99.9 6.9E-22 1.8E-26 157.4 14.4 121 7-132 1-123 (147)
20 PRK06228 F0F1 ATP synthase sub 99.8 1.4E-19 3.5E-24 143.0 15.8 122 6-132 1-123 (130)
21 TIGR01216 ATP_synt_epsi ATP sy 99.8 4.7E-18 1.2E-22 133.4 11.8 125 6-133 1-126 (131)
22 pfam00401 ATP-synt_DE ATP synt 94.0 0.13 3.2E-06 30.8 5.0 42 90-134 1-42 (48)
23 TIGR02302 aProt_lowcomp conser 51.3 19 0.00049 17.1 3.4 41 84-124 855-896 (899)
24 pfam06865 DUF1255 Protein of u 45.0 25 0.00065 16.4 7.1 68 16-83 5-83 (94)
25 PRK05518 rpl6p 50S ribosomal p 44.4 25 0.00063 16.5 3.0 58 3-60 2-59 (181)
26 PRK10579 hypothetical protein; 39.8 31 0.00078 15.9 6.7 63 16-78 5-77 (94)
27 pfam06890 Phage_Mu_Gp45 Bacter 38.9 32 0.00081 15.8 4.6 52 35-87 61-114 (162)
28 TIGR01621 RluA-like pseudourid 35.9 30 0.00076 16.0 2.4 69 34-102 1-80 (222)
29 pfam11576 DUF3236 Protein of u 31.6 41 0.0011 15.1 4.5 82 20-102 60-141 (154)
30 TIGR01879 hydantase amidase, h 31.0 42 0.0011 15.0 4.4 50 64-113 258-310 (406)
31 COG1943 Transposase and inacti 29.5 34 0.00087 15.6 1.8 20 34-53 52-71 (136)
32 pfam09987 DUF2226 Uncharacteri 28.8 26 0.00065 16.4 1.1 53 36-92 16-69 (252)
33 COG1795 Formaldehyde-activatin 27.5 31 0.00079 15.9 1.3 60 38-97 42-126 (170)
34 PRK13551 agmatine deiminase; P 27.5 49 0.0012 14.6 2.4 44 64-107 146-189 (360)
35 pfam07253 Gypsy Gypsy protein. 26.7 50 0.0013 14.5 4.5 53 34-86 302-359 (472)
36 KOG1231 consensus 25.4 53 0.0014 14.4 3.4 35 5-39 190-229 (505)
37 pfam01797 Transposase_17 Trans 24.1 55 0.0014 14.3 2.1 20 33-52 43-62 (121)
38 KOG2962 consensus 23.1 55 0.0014 14.3 1.9 67 16-87 32-100 (322)
39 pfam09239 Topo-VIb_trans Topoi 20.8 65 0.0017 13.8 4.5 98 9-108 27-140 (160)
No 1
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.6e-34 Score=236.28 Aligned_cols=127 Identities=30% Similarity=0.465 Sum_probs=114.0
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf 44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il 82 (135)
|++||+|+||||++++|+++|++|++||.+|+|||||||+|+|+.|.||+++|+ .+++++.|+|+|||++|.+|+|+||
T Consensus 1 Ma~t~~l~IvtP~~~~~~~~v~~v~~p~~~G~~gILp~H~p~it~L~~G~v~i~-~~g~~~~~~v~gGf~ev~~~~v~IL 79 (135)
T PRK13446 1 MAKKLKLEIVTPEKKVLSEEVDEVVAPGAEGEFGVLPGHAPFLTALKIGELTYK-KGGKTHHVAVNGGFFEVSDNKVTVL 79 (135)
T ss_pred CCCCEEEEEECCCCEEEECEEEEEEEECCCCCHHHHHCCCHHHHCCCCCEEEEE-ECCEEEEEEECCEEEEEECCEEEEE
T ss_conf 998339999969850782478899996784586302170103331247279999-8990899998508999979999999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 811220768599999999999999965078889999999999999999
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCL 130 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~ 130 (135)
++.|++.++||.+++++++++|+++|++..+.++.++..++.++.+..
T Consensus 80 ad~ae~~~dID~~~a~~~~erAe~~L~~~~~~~~~~~~~~a~L~rA~~ 127 (135)
T PRK13446 80 AETAERAEEIDVERAKAALGRAEERLKKLTPEDDVFRAEEAALERALI 127 (135)
T ss_pred EHHEEEHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 424070623999999999999999987587537899999999999999
No 2
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=5.4e-34 Score=232.97 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=108.0
Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE
Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135)
++||+|+||||++.+|+|+|++|++||.+|+|||||||+|+|+.|.||++++...+|++..|+|+|||++|.+|+|+||+
T Consensus 1 ant~~l~IvTP~~~~~~~~v~~v~~p~~~Ge~gIL~~H~p~it~L~~G~~~i~~~~g~~~~~~v~gGf~ev~~n~vtILa 80 (132)
T PRK13450 1 ANNIKLTIFTPEKNFKIGEVKEVITEGLDGELEILPNHVPMITYLKPTITKIIDENGEKKKIFTSSGILKVENNEVYIIC 80 (132)
T ss_pred CCEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHCHHHHHHEECCCEEEEEECCCCEEEEEECCEEEEEECCEEEEEE
T ss_conf 98289999979972895578999998683097336374747426556079999789959999987189999899999995
Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 112207685999999999999999650788899
Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQ 116 (135)
Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~ 116 (135)
+.|++.++||.+++++++++|+++|++..+.|.
T Consensus 81 d~ae~~~eID~~~a~~~~~~Ae~~L~~~~~~d~ 113 (132)
T PRK13450 81 DASEWPEEIDIKRAENAKKRAEERLKNKDEIDV 113 (132)
T ss_pred HHEECHHHCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 112836248999999999999999864851459
No 3
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.6e-33 Score=230.11 Aligned_cols=129 Identities=31% Similarity=0.522 Sum_probs=114.9
Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE
Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135)
|+||+|+||||++.+|+++|++|++||.+|+|||||||+|+|+.|+||+++++. +++++.|||+|||++|.+|+|+||+
T Consensus 1 M~tf~leIVTPe~~v~~~ev~~V~~p~~~Ge~GIL~~H~Plit~L~~G~v~i~~-~~~~~~~~v~GGf~eV~~~~v~ILa 79 (135)
T PRK13448 1 MATFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTA-GGNQQKIVVLGGLAEVSEKGLTVLA 79 (135)
T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCHHHEEEECCEEEEEEE-CCEEEEEEECCEEEEEECCEEEEEE
T ss_conf 972899999898518952679999957804722357874034677465899998-9908999996419999799999997
Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112207685999999999999999650788899999999999999998860
Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134 (135)
Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~~~ 134 (135)
++|++.++||.+++++.+++|+++|++...++. .++.+.+..++.++.++
T Consensus 80 e~Ae~~~eID~~~a~~~~erAe~~L~~~~~d~~-~ra~~~le~~~~l~~~l 129 (135)
T PRK13448 80 DVATSVADLDLAQFAATIAEMEAQLAGKVGDEL-DRAIERLDHFKSIQHQL 129 (135)
T ss_pred EEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHH
T ss_conf 166814458999999999999999754880089-99999999999999998
No 4
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.9e-33 Score=229.54 Aligned_cols=110 Identities=25% Similarity=0.403 Sum_probs=103.5
Q ss_pred CEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEE
Q ss_conf 40269998488637522131999960573357768980026670688079962688403542267569994996999981
Q gi|254780614|r 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSE 84 (135)
Q Consensus 5 ~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~ 84 (135)
++|+|+||||++.+|+|+|++|++||.+|+|||||||+|+|+.|.||+++|+. ++++..|||+|||++|.+|+|+||++
T Consensus 4 k~~~l~IVTPe~~v~~gev~~V~~p~~~Ge~GIL~~H~Plit~L~~G~v~i~~-~~~~~~~~vsGGf~eV~~~~VtILad 82 (145)
T PRK13452 4 KYLKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRK-DQHTDVLYVSGGIVEVTPTRVTIMVD 82 (145)
T ss_pred CEEEEEEECCCCCEEECEEEEEEEECCCCCEEECCCCHHHHEEECCEEEEEEE-CCCEEEEEECCEEEEEECCEEEEEEC
T ss_conf 66699999798637704778999988985477856844022156250899998-99489999866399998999999976
Q ss_pred CCEEHHHCCHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 1220768599999999999999965078889
Q gi|254780614|r 85 TILPMDNACLQALEKRIDEVCSDLNNICDVD 115 (135)
Q Consensus 85 ~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~ 115 (135)
.|+++++||.++|++++++|+++|++....+
T Consensus 83 ~Ae~~edID~~rA~~a~~rAee~l~~~~~~~ 113 (145)
T PRK13452 83 DMERAENLNQAEAEKARARAKEVLKNPDASK 113 (145)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 2335322999999999999999986566554
No 5
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=2e-33 Score=229.44 Aligned_cols=118 Identities=32% Similarity=0.496 Sum_probs=110.1
Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE
Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135)
|++|+|+||||++.+|+++|++|++||++|+|||||||+|+|+.|.||+++|+.++|.+..|+|+|||++|.+|+|+||+
T Consensus 1 M~t~~l~IvtP~~~~~~~~v~~V~lp~~~G~~giLp~H~p~it~L~~G~l~i~~~~g~~~~~~v~gG~~~v~~n~v~Ila 80 (135)
T PRK00571 1 MMTLTVDIVSPEGSIFSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKADGEEESIAVSGGFLEVQPDKVTVLA 80 (135)
T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCHHHHHHCCCCEEECCCCCEEEEECCCEEEEEEECCEEEEEECCEEEEEE
T ss_conf 96479999969852885468899995685176322331650265259808999669909999996739999899999996
Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 11220768599999999999999965078889999999
Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQME 121 (135)
Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~ 121 (135)
+.|++.++||.+++++++++|+++|++..+..+..+++
T Consensus 81 ~~a~~~~eId~~~a~~~~~~Ae~~l~~~~~~~e~~~a~ 118 (135)
T PRK00571 81 DSAERADDIDEARAEEAKERAEEALENAHDDVDYARAQ 118 (135)
T ss_pred HHEEEHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 21380524999999999999999986088868999999
No 6
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=3.6e-33 Score=227.85 Aligned_cols=131 Identities=27% Similarity=0.443 Sum_probs=112.3
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf 44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il 82 (135)
|++||+|+||||++.+|+|+|++|++||.+|+|||||||+|+|+.|+||+++++..++ ++.|||+|||++|.+|+|+||
T Consensus 1 Ma~t~~leiVtPe~~v~sg~v~~V~~Pg~eGe~GILp~HaPlit~L~~G~l~i~~~~~-~~~~~VsGGF~eV~~~~vtIL 79 (136)
T PRK13443 1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAEGPSG-TQEYAVTGGFAEINATSISVL 79 (136)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCEEEEEECCEEEEEEECCC-EEEEEECCEEEEEECCEEEEE
T ss_conf 9984699999998136754478999976863733020421027887036999997995-299999352999989999999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 8112207685999999999999999650788899---999999999999998860
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICDVDQ---RFQMEQLLVDLSCLRRRI 134 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~---~~~~~~~~~~l~~~r~~~ 134 (135)
++.|++.++||.+++++++++|++++.+..+..+ ...+.+.+..+.++..++
T Consensus 80 ae~A~~~~eid~~~~e~~i~~Ae~~~~~~~~~~~~~Did~A~k~la~~~~~~~~~ 134 (136)
T PRK13443 80 AEKAIPVEELTGAVLDEFIAEARELASVALPENEPGDVDDAAKTLADMLALGAHM 134 (136)
T ss_pred EHEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 0411886789999999999999999986355415788999999999999877543
No 7
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=100.00 E-value=7.8e-33 Score=225.75 Aligned_cols=115 Identities=23% Similarity=0.425 Sum_probs=107.3
Q ss_pred EEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEEC
Q ss_conf 02699984886375221319999605733577689800266706880799626884035422675699949969999811
Q gi|254780614|r 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSET 85 (135)
Q Consensus 6 ~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~ 85 (135)
||+|+||||++.+|+++|++|++||++|+|||||||+|+|+.|.||+++++. ++++..|+|+|||++|.+|+|+||++.
T Consensus 2 t~~l~IvTP~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~ev~~~~V~ILad~ 80 (133)
T CHL00063 2 TLNLCVLTPNRIVWDSEVDEIILPTNSGQIGILPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNNEITILVND 80 (133)
T ss_pred EEEEEEECCCCEEEECEEEEEEEECCCCCHHHHHCCHHHHCCCCCCEEEEEE-CCEEEEEEECCCEEEEECCEEEEEEEE
T ss_conf 5899999599638804788999956851850121874242024585699998-991999998674999939989999705
Q ss_pred CEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 220768599999999999999965078889999999
Q gi|254780614|r 86 ILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQME 121 (135)
Q Consensus 86 a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~ 121 (135)
|++.++||.++|++++++|+++|++..+..++.+++
T Consensus 81 ae~~~~ID~~rA~~a~~~Ae~~L~~~~~~~e~~~A~ 116 (133)
T CHL00063 81 AEKGSDIDPQEAQQTLEIAEANLNKAEGKKQKIEAN 116 (133)
T ss_pred EECHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 481555899999999999999986087737899999
No 8
>PRK13445 consensus
Probab=100.00 E-value=2e-32 Score=223.14 Aligned_cols=127 Identities=31% Similarity=0.465 Sum_probs=109.9
Q ss_pred CEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEE
Q ss_conf 40269998488637522131999960573357768980026670688079962688403542267569994996999981
Q gi|254780614|r 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSE 84 (135)
Q Consensus 5 ~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~ 84 (135)
.+|+|+||||++.+|+++|++|++||++|+|||||||+|+|+.|.||+++++. ++++..|+|+|||++|.+|+|+||++
T Consensus 1 e~~~l~IvtP~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~pG~l~i~~-~~~~~~~~v~gGf~ev~~~~v~ILad 79 (132)
T PRK13445 1 EKLKLEIVTPDKRVLSEEVDEVGAPGALGEFGVLPGHIPFLTALKIGELTYKK-GGKTHHYAVNGGFAEVSDNKVTVLAE 79 (132)
T ss_pred CEEEEEEECCCCEEEECEEEEEEEECCCCCCEECCCCCCHHHCCCCEEEEEEE-CCCEEEEEECCEEEEECCCEEEEEEE
T ss_conf 91499999798528804557999976841723136873201102643899997-99489999925699981999999952
Q ss_pred CCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12207685999999999999999650788899999999999999998860
Q gi|254780614|r 85 TILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134 (135)
Q Consensus 85 ~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~~~ 134 (135)
+|++.+|||.+++++++++|+++|++..+.+..+. ++...+.++.+|+
T Consensus 80 ~a~~~~eID~~~a~~~~~~Ae~~l~~~~~~~~d~~--~a~~~l~rA~arl 127 (132)
T PRK13445 80 TAERADEIDVERARAALGRAEARLKGLTPEDKDFA--RAEAALERALARM 127 (132)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHH
T ss_conf 14815239999999999999999871786427799--9999999999999
No 9
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=2.5e-32 Score=222.57 Aligned_cols=110 Identities=25% Similarity=0.444 Sum_probs=104.2
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf 44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il 82 (135)
|+++|+|+||||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++++.+ ++++.|||+|||++|.+|+|+||
T Consensus 2 Ma~~~~l~IVTP~~~~~~~~v~~V~~p~~~G~~GILp~H~Plit~L~~G~v~i~~~-~~~~~~~V~gGf~eV~~n~v~IL 80 (127)
T PRK13444 2 MAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKG-EKLKRISVEGGFCEVKDNQISIL 80 (127)
T ss_pred CCCCCEEEEECCCCEEEECEEEEEEEECCCCCCCCCCCCHHHHEEECCCEEEEEEC-CCEEEEEECCCEEEEECCEEEEE
T ss_conf 85662999998984288246589999778528300007612310313617999989-91899999560999979999999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8112207685999999999999999650788
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICD 113 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~ 113 (135)
++.|++.++||.+++++++++|++++++...
T Consensus 81 ae~ae~~~dID~e~a~~a~~rAe~~l~~~~~ 111 (127)
T PRK13444 81 TDHGALKEDIDHEHEKKLLAEAEKLPPSDSK 111 (127)
T ss_pred EEEEEEHHHCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 7055804348999999999999756646850
No 10
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.98 E-value=7.1e-32 Score=219.74 Aligned_cols=109 Identities=19% Similarity=0.433 Sum_probs=103.7
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECC--CCEEEEECCCCEEEEECCEEE
Q ss_conf 444026999848863752213199996057335776898002667068807996268--840354226756999499699
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSC--EEIHRYVVIGGICDIVPSHCT 80 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~--~~~~~~~V~gG~~~v~~~~v~ 80 (135)
|++||+|+||||++.+|+++|++|++||.+|+|||||||+|+|+.|+||+++++..+ +....|||+|||++|.+|+|+
T Consensus 1 M~~t~~l~IVTPe~~v~~~ev~~V~vPg~eG~~GILp~Haplit~L~~G~v~v~~~~~~~~~~~~~V~GGfveV~~n~vt 80 (112)
T PRK01474 1 MNETILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKPENTYLISGGVTEVTGSYIN 80 (112)
T ss_pred CCCCEEEEEECCCEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCEEEECCCEEE
T ss_conf 99835999999980477136579999887507002678611165531858999986899947999987869998199899
Q ss_pred EEEECCEEHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9981122076859999999999999996507
Q gi|254780614|r 81 VLSETILPMDNACLQALEKRIDEVCSDLNNI 111 (135)
Q Consensus 81 Il~~~a~~~~~iD~~~a~~~~e~a~~~l~~~ 111 (135)
||++.|+..++||.+++++++++|+++|++.
T Consensus 81 ILad~A~~~~did~~~~~~~~~~ae~~L~~~ 111 (112)
T PRK01474 81 IATETAINVTNLSEAEIATKLLDLQKTLSDQ 111 (112)
T ss_pred EEEHHEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9933308904599999999999999987547
No 11
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=99.98 E-value=2.9e-31 Score=215.95 Aligned_cols=129 Identities=31% Similarity=0.504 Sum_probs=112.2
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCC-CEEEEECCCCEEEEECCEEEE
Q ss_conf 4440269998488637522131999960573357768980026670688079962688-403542267569994996999
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCE-EIHRYVVIGGICDIVPSHCTV 81 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~-~~~~~~V~gG~~~v~~~~v~I 81 (135)
|++ |+|+||||++.+|+|+|++|++||++|+|||||||+|+|+.|+||+++++..++ ++..++|+|||++|.++.|+|
T Consensus 1 M~~-l~l~IVsP~~~i~~g~v~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~~~~vtI 79 (135)
T COG0355 1 MAE-LKLEIVSPEGIIYSGEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQPNEVTI 79 (135)
T ss_pred CCC-EEEEEECCCCEEEEEEEEEEEEECCCEEEECCCCCCCCEEEECCCEEEEEECCCCCEEEEEEECCEEEEECCEEEE
T ss_conf 983-4899984770177037899999647705612789744100243867999965898437999955589982787899
Q ss_pred EEECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHH
Q ss_conf 9811220768599999999999999965078889999999-99999999988
Q gi|254780614|r 82 LSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQME-QLLVDLSCLRR 132 (135)
Q Consensus 82 l~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~-~~~~~l~~~r~ 132 (135)
||++|++.+|||.+++++++++|++.+++..+..+..+++ .+...+++++.
T Consensus 80 lad~A~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~~ 131 (135)
T COG0355 80 LADSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLRV 131 (135)
T ss_pred EECEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9752684264899999999999999987454407999999999999998554
No 12
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.97 E-value=5.9e-30 Score=207.76 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=112.6
Q ss_pred EEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf 26999848863752213199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI 86 (135)
Q Consensus 7 ~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a 86 (135)
|+|+|+||++.+|+++|++|++||++|++||||+|+|+++.|.||+++|+..|+.++.++|+|||++|.+++|+|||++|
T Consensus 2 lkl~ivtP~~~~~~~~V~~V~vktteG~~Gil~~h~Plit~I~~gv~~I~~~d~~~~~~~I~gGf~eV~~~~vtIlad~a 81 (130)
T PRK00539 2 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENF 81 (130)
T ss_pred CCEEEECCCCEEECCCEEEEEEECCCCEEEECCCCCCEEEEECCEEEEEEECCCCEEEEEEECCEEEECCCEEEEEHHHC
T ss_conf 31699677715605816999996365346543798732788615089999679967899995368998474899993312
Q ss_pred EEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 20768599999999999999965078889999999999
Q gi|254780614|r 87 LPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 (135)
Q Consensus 87 ~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~ 124 (135)
+++||||.++++++++++++++++..+.+....+++.+
T Consensus 82 e~~deID~dra~kaK~~aE~rlk~t~d~k~~ikl~~nl 119 (130)
T PRK00539 82 VFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNL 119 (130)
T ss_pred CCCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 44012289999999999999860563106667688765
No 13
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.96 E-value=2e-29 Score=204.50 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=94.9
Q ss_pred EEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf 26999848863752213199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI 86 (135)
Q Consensus 7 ~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a 86 (135)
|+|+||||++.+|+++|++|++||.+|+|||||||+|+++.|.||.++++.+++ +..|+|+|||++|.+|+|+||++.|
T Consensus 1 lkl~IVTP~~~~~~~ev~~V~~~t~~Ge~GILp~H~Plva~L~~G~v~i~~~~~-~~~~aV~gGf~ev~~~~V~ILad~a 79 (101)
T PRK13451 1 MKLKIVTPYGIMYDREVDIVTFRTVEGEMGILPRRAPIIAKLRVDDVKIKSGDD-EYEYKVDDGFLHCDGENVIILTEEV 79 (101)
T ss_pred CEEEEECCCCEEECCEEEEEEEECCCCCEEECCCCCEEEEEEECCEEEEEECCC-EEEEEEECCEEEEECCEEEEEEHHC
T ss_conf 989999898479916678999987861700669983169788352899998997-8999991629999799999997012
Q ss_pred EEHHHCCHHHHHHHHHHHHHH
Q ss_conf 207685999999999999999
Q gi|254780614|r 87 LPMDNACLQALEKRIDEVCSD 107 (135)
Q Consensus 87 ~~~~~iD~~~a~~~~e~a~~~ 107 (135)
++.+|||.++|+++++||++.
T Consensus 80 e~~~eID~~ra~~AkerAEk~ 100 (101)
T PRK13451 80 GRKEEIDPHKYLGGRERVERV 100 (101)
T ss_pred CCHHHCCHHHHHHHHHHHHHC
T ss_conf 282369999999999987622
No 14
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.95 E-value=2.5e-27 Score=191.31 Aligned_cols=89 Identities=34% Similarity=0.442 Sum_probs=87.1
Q ss_pred CEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEE
Q ss_conf 40269998488637522131999960573357768980026670688079962688403542267569994996999981
Q gi|254780614|r 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSE 84 (135)
Q Consensus 5 ~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~ 84 (135)
+||+|+|+||++.+|+|+|++|++|+++|+|||||||+|+++.|+||.++|+..+|++..|+|+|||++|.+|+|+||++
T Consensus 3 ~t~~l~IvTPe~~~~~gev~~v~~p~~~G~~gILp~H~p~it~L~~G~v~i~~~~g~~~~~~v~gGf~eV~~n~vtILad 82 (91)
T PRK13442 3 ATLHVNIVAADHEVWSGEATMVVARTTEGDIGVLPGHEPLLGVLASGTVTIVKSGGGRISAAVDGGFISVANNKVSVLAE 82 (91)
T ss_pred CEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCEEEEEECCEEEEEEC
T ss_conf 48999999798519954648999988865720568982029998163899998999699999976499998999999976
Q ss_pred CCEEHHHCC
Q ss_conf 122076859
Q gi|254780614|r 85 TILPMDNAC 93 (135)
Q Consensus 85 ~a~~~~~iD 93 (135)
.|+++++||
T Consensus 83 ~ae~~~eID 91 (91)
T PRK13442 83 RAELVQEID 91 (91)
T ss_pred EEECHHHCC
T ss_conf 039478799
No 15
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.93 E-value=1.5e-25 Score=180.19 Aligned_cols=86 Identities=41% Similarity=0.611 Sum_probs=80.3
Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCC-EEEEECCCCEEEEECCEEEEE
Q ss_conf 4402699984886375221319999605733577689800266706880799626884-035422675699949969999
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEE-IHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~-~~~~~V~gG~~~v~~~~v~Il 82 (135)
|.+|+|+||||++.+|+++|++|++||.+|+|||||||+|+++.|+||.++|+..++. ++.|+|+|||++|.+|+|+||
T Consensus 1 M~~l~leiVTPe~~v~~g~v~~V~~p~~~G~~GILp~H~Plit~L~~G~v~i~~~~g~~~~~~~v~gGf~eV~~n~vtIL 80 (88)
T PRK13449 1 MAKLHFELVTPERLLRSGEVHMVVVPGTEGDFGVLAGHAPFMTTLRDGEVTVYSSEGAKPEVIHVQGGFAEVNEKGLTIL 80 (88)
T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEEECCCEEEEECCEEEEE
T ss_conf 97479999999824886278899997782461125898200888648589999969987999999764999979999999
Q ss_pred EECCEEH
Q ss_conf 8112207
Q gi|254780614|r 83 SETILPM 89 (135)
Q Consensus 83 ~~~a~~~ 89 (135)
+|.|++.
T Consensus 81 ae~Ae~a 87 (88)
T PRK13449 81 AEHAVEA 87 (88)
T ss_pred EHEEEEC
T ss_conf 7503996
No 16
>KOG1758 consensus
Probab=99.92 E-value=2.4e-24 Score=172.67 Aligned_cols=127 Identities=20% Similarity=0.371 Sum_probs=112.1
Q ss_pred CCEEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEE-CCEEEE
Q ss_conf 440269998488637522-131999960573357768980026670688079962688403542267569994-996999
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIV-PSHCTV 81 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~-~~~v~I 81 (135)
.++|+|.+.+|.+.+|++ +|++|.+|+..|+||||+||.|++..|+||++.++.+++....|||||||+.+. ++.|.|
T Consensus 26 ~~~L~l~fa~P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~~~~~k~FvSsGfa~v~~ds~~~i 105 (159)
T KOG1758 26 PEKLKLTFALPNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKSKYFVSSGFATVNADSSLQI 105 (159)
T ss_pred CCEEEEEEECCCEEEECCCEEEEEECCCCCCCEEEECCCCCCHHEECCCEEEEEECCCCEEEEEEECCEEEECCCCEEEE
T ss_conf 85269999437537863852689861266762102115686301033636999957983788998345279868970789
Q ss_pred EEECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9811220768599999999999999965078889999999999999999886
Q gi|254780614|r 82 LSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRR 133 (135)
Q Consensus 82 l~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~~ 133 (135)
|+++|++.++||.+++++.++++++++.+..++..+.+ +..+.+.++.+
T Consensus 106 la~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AE---A~I~vev~eal 154 (159)
T KOG1758 106 LAEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAE---AQIRVEVAEAL 154 (159)
T ss_pred EEHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHHHHHH
T ss_conf 72020132108989999999999998524633778888---89999999999
No 17
>pfam02823 ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain. Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).
Probab=99.89 E-value=7.5e-23 Score=163.37 Aligned_cols=80 Identities=40% Similarity=0.730 Sum_probs=77.9
Q ss_pred EEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf 26999848863752213199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI 86 (135)
Q Consensus 7 ~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a 86 (135)
|+|+|+||++.+|+++|++|++|+.+|+|||||||+|+|+.|.||.++++..+++++.|+|+|||+++.+|+|+|++++|
T Consensus 1 ~~l~IvtP~~~~~~~~v~~v~~~~~~G~~gIl~~H~p~i~~L~~G~i~i~~~~g~~~~~~v~~G~~~v~~n~v~Il~~~A 80 (80)
T pfam02823 1 LKLEIVTPERVVFSGEVEMVVAPGTEGEFGILPGHAPLLTALKPGVLRIKTEDGEEEKIAVSGGFLEVQPNEVTILADEA 80 (80)
T ss_pred CEEEEECCCCEEEECEEEEEEEECCCEEEEECCCCHHHEEEECCEEEEEEECCCCEEEEEECCEEEEEECCEEEEEECCC
T ss_conf 99999989965980579999997782568886899003249931699999899959999998889999899999998439
No 18
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.89 E-value=7.5e-22 Score=157.14 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=95.0
Q ss_pred EEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf 69998488637522-13199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r 8 HFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI 86 (135)
Q Consensus 8 ~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a 86 (135)
+|+|+||++++|++ +|.+|++++.+|+|||||||+||+|.|+||+++++..+|.+.+++|+||++.+.++.|+|++++|
T Consensus 1 kL~I~tP~~v~~~~~~V~~v~ae~~~G~fGILP~H~d~vt~L~pgil~~~~~~G~e~~~Av~~GiLv~~g~~V~V~~r~A 80 (122)
T TIGR03166 1 RLKILTPFRVFLDKLPVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGADVEVSVRNA 80 (122)
T ss_pred CCEEECCCEEEECCCCEEEEEEECCCCCEEECCCCCCEEEEECCEEEEEEECCCCEEEEEECCEEEEEECCEEEEEEEEE
T ss_conf 94997888578816886999997588625675798674756454799999789968999987729998699999998102
Q ss_pred EEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 207685999999999999999650788899999999999999998
Q gi|254780614|r 87 LPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLR 131 (135)
Q Consensus 87 ~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r 131 (135)
+..+ |.+++++..+.....++ +.+...+...+.+....+|
T Consensus 81 v~g~--dL~~L~~~V~~~f~~~d---e~er~~R~~~~rLe~~~vR 120 (122)
T TIGR03166 81 VGGT--ELEELEEAVRQEFLTLD---EQERSARSAMARLESDFIR 120 (122)
T ss_pred ECCC--CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 1689--99999999999998676---8888888999998876764
No 19
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.89 E-value=6.9e-22 Score=157.36 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=96.7
Q ss_pred EEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEE-CCEEEEEEE
Q ss_conf 269998488637522-131999960573357768980026670688079962688403542267569994-996999981
Q gi|254780614|r 7 LHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIV-PSHCTVLSE 84 (135)
Q Consensus 7 ~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~-~~~v~Il~~ 84 (135)
|+|+|+||++++|++ +|.+|..|+.+|+|||||||+||+|.|.||+++++..+|.+.+++|+|||++|+ ++.|.|.++
T Consensus 1 m~L~I~tP~~v~~~~~~V~~v~a~~~~G~fGILp~H~d~lt~L~pGvl~~~~~~g~e~~~aV~gG~L~Vk~G~~V~Va~r 80 (147)
T PRK13447 1 LRLTIATPLAVVVDELPIVSLRAEDASGSFGILPGHADFLTLLRASVVRWRRADGATHYCAVRGGVLRVTGGARVEIACR 80 (147)
T ss_pred CEEEEECCCEEEECCCCEEEEEEECCCCCEEECCCCCCCEEEECCEEEEEEECCCCEEEEEECCEEEEECCCCEEEEEEE
T ss_conf 95799667767872787799997248752456679866031135668999977996899998570899838997999986
Q ss_pred CCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 122076859999999999999996507888999999999999999988
Q gi|254780614|r 85 TILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRR 132 (135)
Q Consensus 85 ~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~ 132 (135)
.|+..+|++..++.-..+.++..- .+.+.+.+.+.+....+|+
T Consensus 81 ~Av~G~dL~~L~~~V~~~f~~~de-----~er~aR~~~arLea~~vRr 123 (147)
T PRK13447 81 EAVLGDDLARLEAVVRGVRAAQLD-----AARRARVDQTRLHAQAVRQ 123 (147)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_conf 322566899999999999987778-----8899889999878999999
No 20
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=99.84 E-value=1.4e-19 Score=142.96 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=96.6
Q ss_pred EEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEE
Q ss_conf 0269998488637522-131999960573357768980026670688079962688403542267569994996999981
Q gi|254780614|r 6 DLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSE 84 (135)
Q Consensus 6 ~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~ 84 (135)
.|+|+|+||.+++++. +|..|++++.+|+|||||||.||+|.|.||+++++..+|.+.+++|++|++...+..|.|-+.
T Consensus 1 ~M~L~I~tP~~v~~~~~~V~~v~ae~~~G~fGILP~H~d~vt~L~pgil~~~~~~g~e~~~AVd~GiLvk~G~~V~Vs~R 80 (130)
T PRK06228 1 SMNLKILLPFQVFAEKKRVTRIVAETPEGSFGLLPHRLDCVAALVPGILIYETEAEGEVFVAVDEGILVKTGPDVLVSVR 80 (130)
T ss_pred CCEEEEECCCEEEECCCCEEEEEEECCCCCEEECCCCCCEEEEECCEEEEEEECCCCEEEEEECCCEEEEECCEEEEEEE
T ss_conf 95799977650355368768999964886255647975614441547899997899689999778189962888999997
Q ss_pred CCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 122076859999999999999996507888999999999999999988
Q gi|254780614|r 85 TILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRR 132 (135)
Q Consensus 85 ~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~ 132 (135)
+|+..+ |.+++++..+.....++. .+...+.+.+.+....+|+
T Consensus 81 ~Av~g~--dL~~L~~~V~~~f~~~de---~er~aR~~~~rLea~~vRr 123 (130)
T PRK06228 81 NAIGGT--DLGELREAVEQEFLTLDE---RERSVRSALAKLESGFLRR 123 (130)
T ss_pred ECCCCC--CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 420699--999999999999986668---8899999999998999999
No 21
>TIGR01216 ATP_synt_epsi ATP synthase F1, epsilon subunit; InterPro: IPR001469 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) . In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=99.77 E-value=4.7e-18 Score=133.41 Aligned_cols=125 Identities=31% Similarity=0.484 Sum_probs=108.9
Q ss_pred EEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEEC
Q ss_conf 02699984886375221319999605733577689800266706880799626884035422675699949969999811
Q gi|254780614|r 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSET 85 (135)
Q Consensus 6 ~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~ 85 (135)
++++++++|++.+|+++++.+.+|+.+|++|++|+|.|+++.+++|.+++...++ +..+++++||+++.++.++++++.
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~g~~~~h~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~l~~~ 79 (131)
T TIGR01216 1 TLKLEVVTPEGEIYSGEVESVVLPGSEGELGILPGHAPLLTLLKPGVVRIRKLGD-WELIALSGGFLEVEPDKVTVLADG 79 (131)
T ss_pred CEEEEEECCCCHHHCCCEEEEEECCCCCCEEEECCCCHHHHHCCCCEEEEEECCC-CEEEEEECCEEEECCCEEEEEECC
T ss_conf 9256774332000001113567315555101103620012210334257742687-215676334345417614787411
Q ss_pred CEEHHHCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 220768599999999999999965078-889999999999999999886
Q gi|254780614|r 86 ILPMDNACLQALEKRIDEVCSDLNNIC-DVDQRFQMEQLLVDLSCLRRR 133 (135)
Q Consensus 86 a~~~~~iD~~~a~~~~e~a~~~l~~~~-~~~~~~~~~~~~~~l~~~r~~ 133 (135)
++...++|..++++.++.++..+.+.. ..+... ..+...+...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~ 126 (131)
T TIGR01216 80 AVFGGDLDEAEAEEALEAAEELLESAEGSDDEDL--AEALLKLKKARAR 126 (131)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHH
T ss_conf 0100145877899999988876411678632678--9999999887777
No 22
>pfam00401 ATP-synt_DE ATP synthase, Delta/Epsilon chain, long alpha-helix domain. Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).
Probab=93.96 E-value=0.13 Score=30.78 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=28.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 685999999999999999650788899999999999999998860
Q gi|254780614|r 90 DNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134 (135)
Q Consensus 90 ~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~~~ 134 (135)
++||.++|++.+++|++.|.+..+..+.. ++-..|+++++|+
T Consensus 1 ~~ID~~~A~~a~~~Ae~~L~~~~~~~e~~---~A~~~L~rA~aRl 42 (48)
T pfam00401 1 EDIDEARAEEAKERAEEALAKAEGDKEYI---EAQAALKRARARL 42 (48)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHH
T ss_conf 94489999999999999997422127899---9999999999999
No 23
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302; InterPro: IPR012683 Members of this family are bacterial proteins from the alphaproteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted to be outside the membrane. Bradyrhizobium japonicum contains two tandem copies that are, together, homologous to the single members found in other species. .
Probab=51.32 E-value=19 Score=17.12 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=23.2
Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Q ss_conf 1122076859999999999999996507888-9999999999
Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDV-DQRFQMEQLL 124 (135)
Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~-~~~~~~~~~~ 124 (135)
+...-++|||..++++.++++..+|-++-.- -++.++++++
T Consensus 855 ~~VKiPgEID~QRaR~ILeEiRRkLGdsl~Pq~E~~YleRLL 896 (899)
T TIGR02302 855 DTVKIPGEIDVQRARRILEEIRRKLGDSLSPQLEKDYLERLL 896 (899)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 821338743233588899998775156568167899999850
No 24
>pfam06865 DUF1255 Protein of unknown function (DUF1255). This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown
Probab=45.02 E-value=25 Score=16.38 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=49.3
Q ss_pred CEEECCEEEEEEEEECCCE---EEEC-CC------CCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCE-EEEEE
Q ss_conf 6375221319999605733---5776-89------80026670688079962688403542267569994996-99998
Q gi|254780614|r 16 KCVFSGEVQSVVLPSELGD---ITVL-VG------HAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSH-CTVLS 83 (135)
Q Consensus 16 ~~i~~~~v~~v~~p~~~G~---~gIL-p~------H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~-v~Il~ 83 (135)
.+.|+|.|.+..+-..||. +||+ || ++|=+..+..|.+.++.++...-.-+-.|--.+|-.|. -.|-+
T Consensus 5 NvYFdGkV~S~~v~~~dG~~kTlGVm~pGeY~F~T~~~E~MeivsG~l~V~lpg~~ew~~~~aG~sF~VpanssF~v~v 83 (94)
T pfam06865 5 NVYFDGKVKSITFQFADGTKKTLGVMLPGEYEFGTSAPEIMEVVSGALEVKLPGSDEWQTFRAGESFEVPANSSFDLKV 83 (94)
T ss_pred EEEECCEEEEEEEECCCCCEEEEEEEECEEEEECCCCCEEEEEEEEEEEEECCCCCCCEEECCCCEEEECCCCEEEEEE
T ss_conf 4788883899999928998868999953078875999789999972899998998542793699878978998799998
No 25
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=44.36 E-value=25 Score=16.46 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=48.0
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCC
Q ss_conf 4440269998488637522131999960573357768980026670688079962688
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCE 60 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~ 60 (135)
|+...+=.|.-|+++-.+-+-..|++.|.-|++.---.|..+-..+..+.+.+...++
T Consensus 2 msr~~Kk~I~IP~gV~V~i~~~~i~VkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~~ 59 (181)
T PRK05518 2 VAAEIREEIEIPEGVTVEIEGNEVTVKGPKGEVERDFWYPGIKISVEDGKVVIETSFP 59 (181)
T ss_pred CCHHCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEEECCEEEEEECCC
T ss_conf 4142378824899979999899999996895899994488589999099799980899
No 26
>PRK10579 hypothetical protein; Provisional
Probab=39.75 E-value=31 Score=15.87 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=46.8
Q ss_pred CEEECCEEEEEEEEECCCE---EEE-CCC------CCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCE
Q ss_conf 6375221319999605733---577-689------80026670688079962688403542267569994996
Q gi|254780614|r 16 KCVFSGEVQSVVLPSELGD---ITV-LVG------HAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSH 78 (135)
Q Consensus 16 ~~i~~~~v~~v~~p~~~G~---~gI-Lp~------H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~ 78 (135)
.+.|+|.|.+..+...+|. +|| +|| +++=+..+..|.+.+..++...-.-+-.|--.+|..|.
T Consensus 5 N~YFdGkV~S~~~~~~dg~~kTlGVm~pGeY~F~T~~~E~MeivsG~l~V~lpg~~ew~~~~aG~sF~Vpans 77 (94)
T PRK10579 5 NEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALKVLLPGATDWQVYEAGEVFNVPGHS 77 (94)
T ss_pred EEEECCEEEEEEEECCCCCEEEEEEEECCEEEECCCCCEEEEEEEEEEEEECCCCCCCEEECCCCEEEECCCC
T ss_conf 4675883789999959998668999963268865999789999952899997997542691699868968999
No 27
>pfam06890 Phage_Mu_Gp45 Bacteriophage Mu Gp45 protein. This family consists of Bacteriophage Mu Gp45 related proteins from both phages and bacteria. The function of this family is unknown although it has been suggested that family members may be involved in baseplate assembly.
Probab=38.90 E-value=32 Score=15.79 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=31.2
Q ss_pred EEECCCCCEEEE-ECCCCEEEEEECCCCEEEEECCCC-EEEEECCEEEEEEECCE
Q ss_conf 577689800266-706880799626884035422675-69994996999981122
Q gi|254780614|r 35 ITVLVGHAPVLT-TIKSGIVTISLSCEEIHRYVVIGG-ICDIVPSHCTVLSETIL 87 (135)
Q Consensus 35 ~gILp~H~p~i~-~L~~G~i~i~~~~~~~~~~~V~gG-~~~v~~~~v~Il~~~a~ 87 (135)
+-|--.|..+=- .|.||++-++..+|... ..-.+| ++++..+.++|-+..-.
T Consensus 61 Vviaved~~yR~~~L~~GEvalY~~~G~~I-~Lt~~G~iI~~~~~~~~v~Aa~~v 114 (162)
T pfam06890 61 VAVVVEDRRYRPKGLEAGDVALYHDEGHRV-RLTRDGRVINGACKTFTIYAAQSA 114 (162)
T ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCEE-EEEECCEEEEECCCEEEEECCCCE
T ss_conf 999976855312578888589980689999-990187899960867999746727
No 28
>TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621; InterPro: IPR006508 These sequences represent a clade within the pseudouridine synthase superfamily. The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences in this family are most closely related to RluA ; only Neisseria does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity..
Probab=35.93 E-value=30 Score=15.97 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=44.1
Q ss_pred EEEECCCCCEEEEECCCCEEEEEECCCCE---EEEECCCCEEEE----ECCE----EEEEEECCEEHHHCCHHHHHHHHH
Q ss_conf 35776898002667068807996268840---354226756999----4996----999981122076859999999999
Q gi|254780614|r 34 DITVLVGHAPVLTTIKSGIVTISLSCEEI---HRYVVIGGICDI----VPSH----CTVLSETILPMDNACLQALEKRID 102 (135)
Q Consensus 34 ~~gILp~H~p~i~~L~~G~i~i~~~~~~~---~~~~V~gG~~~v----~~~~----v~Il~~~a~~~~~iD~~~a~~~~e 102 (135)
++.||-.|.+||.--+++-|.++..+|+. +.+|.=-|.=.| .=|+ +-+||-+++.+.++...-+++.++
T Consensus 1 ~~eilf~H~DF~~INK~~giSVHkD~getgL~~~vA~Qlgv~~vwLvHRLDK~TSGiLllAlNaesAselS~~Fa~~ki~ 80 (222)
T TIGR01621 1 MLEILFRHSDFVLINKSEGISVHKDDGETGLLREVAKQLGVEKVWLVHRLDKVTSGILLLALNAESASELSRLFAKKKIK 80 (222)
T ss_pred CCEEEEECCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHCCEEE
T ss_conf 90577536867898679983277257111389999998189808998700034468999860478999998765217066
No 29
>pfam11576 DUF3236 Protein of unknown function (DUF3236). This family of proteins with unknown function appears to be restricted to Methanobacteria.
Probab=31.60 E-value=41 Score=15.05 Aligned_cols=82 Identities=13% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECCEEHHHCCHHHHHH
Q ss_conf 22131999960573357768980026670688079962688403542267569994996999981122076859999999
Q gi|254780614|r 20 SGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEK 99 (135)
Q Consensus 20 ~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a~~~~~iD~~~a~~ 99 (135)
.-+++++.+||-.-+++=+|--..-+..+...-..+.-.-|. --+.=||.++-+-+++..||+-...+..=|-...+++
T Consensus 60 ~~~~~ml~i~Tn~ADltRmPAi~K~liAvD~sdADlvIaRGR-LGvPGSGSmLvimD~kgRiLTaslSPs~iiHk~~ie~ 138 (154)
T pfam11576 60 LPEAEMLQIPTNSADLTRMPAVSKALMALDISDADLVIARGR-LGVPGSGSMLVIMDSKGRILTAALSPSHVIHKKSIEE 138 (154)
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHEEECCCCCEEEECCC-CCCCCCCCEEEEECCCCCEEEECCCCHHHHHCCCHHH
T ss_conf 975104664686200113807765542131368847996054-4589876379998388768751379126430044999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780614|r 100 RID 102 (135)
Q Consensus 100 ~~e 102 (135)
+.+
T Consensus 139 ~v~ 141 (154)
T pfam11576 139 AVE 141 (154)
T ss_pred HHH
T ss_conf 999
No 30
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family; InterPro: IPR010158 Enzymes in this subfamily hydrolyse the amide bonds of compounds containing carbamoyl groups or hydantoin rings . These enzymes are members of the broader family of amidases.; GO: 0016813 hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in linear amidines, 0008152 metabolic process.
Probab=31.01 E-value=42 Score=14.99 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=40.5
Q ss_pred EEECCCCEEEEECCEEEEE---EECCEEHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5422675699949969999---8112207685999999999999999650788
Q gi|254780614|r 64 RYVVIGGICDIVPSHCTVL---SETILPMDNACLQALEKRIDEVCSDLNNICD 113 (135)
Q Consensus 64 ~~~V~gG~~~v~~~~v~Il---~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~ 113 (135)
...-.=|++++.||.++|+ ++.-+..-++|.++.++..++++++++...+
T Consensus 258 p~VGTvG~v~~~Pn~~NviPg~v~f~~D~R~~~~~~l~~~~~~l~~~~~~is~ 310 (406)
T TIGR01879 258 PTVGTVGKVEAAPNGVNVIPGKVTFTLDLRDLDAAVLSKLTKELEEEIKAISD 310 (406)
T ss_pred CCEECCEEEEECCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 81000034750689664206826899842671478999999999999986302
No 31
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.54 E-value=34 Score=15.57 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.3
Q ss_pred EEEECCCCCEEEEECCCCEE
Q ss_conf 35776898002667068807
Q gi|254780614|r 34 DITVLVGHAPVLTTIKSGIV 53 (135)
Q Consensus 34 ~~gILp~H~p~i~~L~~G~i 53 (135)
++.++|||..++..+.|..-
T Consensus 52 a~~v~pdHVHlli~~pp~~~ 71 (136)
T COG1943 52 AMEVMPDHVHLLITLPPKDS 71 (136)
T ss_pred EEECCCCEEEEEEECCCCCC
T ss_conf 87317997999995799886
No 32
>pfam09987 DUF2226 Uncharacterized protein conserved in archaea (DUF2226). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=28.79 E-value=26 Score=16.37 Aligned_cols=53 Identities=9% Similarity=0.084 Sum_probs=35.3
Q ss_pred EECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEE-EEEECCEEHHHC
Q ss_conf 776898002667068807996268840354226756999499699-998112207685
Q gi|254780614|r 36 TVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCT-VLSETILPMDNA 92 (135)
Q Consensus 36 gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~-Il~~~a~~~~~i 92 (135)
|=|-.-...|+++..|.++|...+|+ .+..||+.|.++.|. +-.......+.+
T Consensus 16 gsleei~d~I~s~~tGyi~I~~k~g~----~L~e~~i~VenGKIVg~y~~~~~s~E~~ 69 (252)
T pfam09987 16 GSLEEIEEEISSLSTGYVRITTRDGE----DLYDAFIIVENGKVVGAYLGRVRSKEEL 69 (252)
T ss_pred CCHHHHHHHHHHHCCCEEEEEECCCC----CCCEEEEEEECCEEEEEEEEECCHHHHH
T ss_conf 66999999998514674999963687----2012589998896999998522107674
No 33
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=27.53 E-value=31 Score=15.85 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=33.0
Q ss_pred CCCCCEEEEECCCCEEE-----------EEECCCCEEEE-------------ECCCCEEEEE-CCEEEEEEECCEEHHHC
Q ss_conf 68980026670688079-----------96268840354-------------2267569994-99699998112207685
Q gi|254780614|r 38 LVGHAPVLTTIKSGIVT-----------ISLSCEEIHRY-------------VVIGGICDIV-PSHCTVLSETILPMDNA 92 (135)
Q Consensus 38 Lp~H~p~i~~L~~G~i~-----------i~~~~~~~~~~-------------~V~gG~~~v~-~~~v~Il~~~a~~~~~i 92 (135)
-.||.|+++.|+|++.. |+........| .|..|++--. .+.+.|+++..+.++--
T Consensus 42 s~GhtPllavlrPNl~~KP~TLivpkvtI~~~~q~~~~fGpaQ~AVAkAVadsveegiip~e~~dd~vvi~svfv~~~a~ 121 (170)
T COG1795 42 SQGHTPLLAVLRPNLAVKPPTLIVPKVTIKNMAQAELIFGPAQAAVAKAVADSVEEGIIPREQADDVVVIVSVFVHPEAE 121 (170)
T ss_pred CCCCCCEEEEECCCCCCCCCEEEECCEEEEEHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEEEEECCCCC
T ss_conf 56897558884588778996688504253006667676267899999999999871589966736889999867576622
Q ss_pred CHHHH
Q ss_conf 99999
Q gi|254780614|r 93 CLQAL 97 (135)
Q Consensus 93 D~~~a 97 (135)
|.+++
T Consensus 122 d~~ki 126 (170)
T COG1795 122 DKRKI 126 (170)
T ss_pred CHHHH
T ss_conf 37899
No 34
>PRK13551 agmatine deiminase; Provisional
Probab=27.53 E-value=49 Score=14.62 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=29.6
Q ss_pred EEECCCCEEEEECCEEEEEEECCEEHHHCCHHHHHHHHHHHHHH
Q ss_conf 54226756999499699998112207685999999999999999
Q gi|254780614|r 64 RYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSD 107 (135)
Q Consensus 64 ~~~V~gG~~~v~~~~v~Il~~~a~~~~~iD~~~a~~~~e~a~~~ 107 (135)
.+...||=+++++++.-+.++++..-.+-+..--++.+|...++
T Consensus 146 ~lVlEGGaie~dG~GtlltTe~clln~nRNP~lsk~~iE~~Lk~ 189 (360)
T PRK13551 146 DFVLEGGSIHVDGEGTLLTTEECLLNPNRNPHLTKEQIEQLLRD 189 (360)
T ss_pred CEEECCCCEEECCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 85973797778898029986888437888987579999999999
No 35
>pfam07253 Gypsy Gypsy protein. This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers.
Probab=26.71 E-value=50 Score=14.53 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=36.2
Q ss_pred EEEECCCCCEEEEECCCCEEEEEECCCC-----EEEEECCCCEEEEECCEEEEEEECC
Q ss_conf 3577689800266706880799626884-----0354226756999499699998112
Q gi|254780614|r 34 DITVLVGHAPVLTTIKSGIVTISLSCEE-----IHRYVVIGGICDIVPSHCTVLSETI 86 (135)
Q Consensus 34 ~~gILp~H~p~i~~L~~G~i~i~~~~~~-----~~~~~V~gG~~~v~~~~v~Il~~~a 86 (135)
.-..+|.|.|-|+.+.+|++.|....+. ..++-++|-|+--.+..++|-....
T Consensus 302 ~C~tq~sHL~~I~~VDdGiIiIND~~a~V~~d~~~E~~isGTYLItF~~s~~INGt~F 359 (472)
T pfam07253 302 SCHTQPSHLPRIEPVDDGIIVINDAHAHVRTDDNIEIHINGTYLITFERSATINETEF 359 (472)
T ss_pred CCCCCCCCCCCCEEECCCEEEEECCCCEEECCCCEEEEEEEEEEEEEEEEEEECCEEE
T ss_conf 3345711298621412657998568735862898179972249999750589977888
No 36
>KOG1231 consensus
Probab=25.36 E-value=53 Score=14.37 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=24.8
Q ss_pred CEEEEEEECCCCEEEC--CEEEEEE---EEECCCEEEECC
Q ss_conf 4026999848863752--2131999---960573357768
Q gi|254780614|r 5 NDLHFELVSPEKCVFS--GEVQSVV---LPSELGDITVLV 39 (135)
Q Consensus 5 ~~~~l~ivtP~~~i~~--~~v~~v~---~p~~~G~~gILp 39 (135)
|-+.|+||||++.+.. +.+.+.. +=|.+|+|||--
T Consensus 190 NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIIT 229 (505)
T KOG1231 190 NVIELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIIT 229 (505)
T ss_pred CEEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 4478899817975896331048401001313675101588
No 37
>pfam01797 Transposase_17 Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.
Probab=24.10 E-value=55 Score=14.29 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=14.4
Q ss_pred CEEEECCCCCEEEEECCCCE
Q ss_conf 33577689800266706880
Q gi|254780614|r 33 GDITVLVGHAPVLTTIKSGI 52 (135)
Q Consensus 33 G~~gILp~H~p~i~~L~~G~ 52 (135)
-+++++|||..++..+.|..
T Consensus 43 ~~~~~~~DHVHllv~~~p~~ 62 (121)
T pfam01797 43 LEINGMPDHVHLLVSLPPKL 62 (121)
T ss_pred EEEEECCCEEEEEEECCCCC
T ss_conf 99994287289999329989
No 38
>KOG2962 consensus
Probab=23.09 E-value=55 Score=14.28 Aligned_cols=67 Identities=18% Similarity=0.082 Sum_probs=36.7
Q ss_pred CEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECC--EEEEEEECCE
Q ss_conf 63752213199996057335776898002667068807996268840354226756999499--6999981122
Q gi|254780614|r 16 KCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPS--HCTVLSETIL 87 (135)
Q Consensus 16 ~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~--~v~Il~~~a~ 87 (135)
++.|.|-+- ++.++.-|.- -|.||||..++--++++...-.-..|-.+||.+---+- .|+.|...++
T Consensus 32 gvYyRGGAL-L~~~t~PG~H----l~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~V 100 (322)
T KOG2962 32 GVYYRGGAL-LTSITGPGFH----LMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAV 100 (322)
T ss_pred EEEEECCEE-EECCCCCCCE----EEEEEEECEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHCHHHH
T ss_conf 889706545-6346899707----97310200000578962143215778787717999742046666142689
No 39
>pfam09239 Topo-VIb_trans Topoisomerase VI B subunit, transducer. Members of this family adopt a structure consisting of a four-stranded beta-sheet backed by three alpha-helices, the last of which is over 50 amino acids long and extends from the body of the protein by several turns. This domain has been proposed to mediate intersubunit communication by structurally transducing signals from the ATP binding and hydrolysis domains to the DNA binding and cleavage domains of the gyrase holoenzyme.
Probab=20.84 E-value=65 Score=13.82 Aligned_cols=98 Identities=17% Similarity=0.281 Sum_probs=54.4
Q ss_pred EEEECCCCEEECCE---EEEEEEEEC----CCEEEE--CCCCCEEEEECCCCEEEEEECCCCEEEEECC--CC-----EE
Q ss_conf 99984886375221---319999605----733577--6898002667068807996268840354226--75-----69
Q gi|254780614|r 9 FELVSPEKCVFSGE---VQSVVLPSE----LGDITV--LVGHAPVLTTIKSGIVTISLSCEEIHRYVVI--GG-----IC 72 (135)
Q Consensus 9 l~ivtP~~~i~~~~---v~~v~~p~~----~G~~gI--Lp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~--gG-----~~ 72 (135)
+..+|-.-.+|+|. |+.-+..|- +|.+.| .+|+.|++-.=+...++=--.+=+|++|-++ +| ++
T Consensus 27 ~aavtR~p~vy~G~PF~VEvgiayGG~~~~~~~~~vlRFANRVPLly~~g~c~itkav~~i~W~~Ygl~q~~~~P~~i~V 106 (160)
T pfam09239 27 VAAVTRKPSVYSGHPFIVEVGIAYGGDIPPEGKPELLRFANRVPLLYDQGACVITKAVESINWKRYGLEQPGGGPLVILV 106 (160)
T ss_pred EEEECCCCCEECCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHCCHHHCCCCCCCCCCEEEEE
T ss_conf 99971498233698879998600168788889724888605676455157438999998767331265689999889999
Q ss_pred EEECCEEEEEEECCEEHHHCCHHHHHHHHHHHHHHH
Q ss_conf 994996999981122076859999999999999996
Q gi|254780614|r 73 DIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDL 108 (135)
Q Consensus 73 ~v~~~~v~Il~~~a~~~~~iD~~~a~~~~e~a~~~l 108 (135)
++....|-.-...=+... |..++++.+..|....
T Consensus 107 hvaSt~VPfts~sKeaIa--~~~EI~~EIrlAl~~~ 140 (160)
T pfam09239 107 HVASTKVPFTSEGKEAIA--DVPEIEREIRLALQEA 140 (160)
T ss_pred EEEECCCCCCCCCHHHHC--CCHHHHHHHHHHHHHH
T ss_conf 961047785662054413--7689999999999999
Done!