Query gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs 108 out of 1581
Neff 7.1
Searched_HMMs 23785
Date Tue May 31 18:06:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780614.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aqt_A ATP synthase; hydrolase 100.0 1.6E-32 6.8E-37 222.4 18.5 130 4-133 1-134 (138)
2 2rq6_A ATP synthase epsilon ch 100.0 2.6E-32 1.1E-36 221.1 10.8 128 6-134 2-129 (138)
3 2e5y_A ATP synthase epsilon ch 100.0 3.2E-31 1.4E-35 214.3 14.8 114 4-118 1-114 (133)
4 2xok_H ATP synthase; hydrolase 100.0 8.6E-31 3.6E-35 211.6 9.4 132 2-135 27-160 (160)
5 2qe7_H ATP synthase subunit ep 100.0 3.9E-32 1.6E-36 220.0 1.5 110 3-114 1-110 (135)
6 3oee_H ATP synthase subunit de 100.0 1.2E-30 5.2E-35 210.6 1.1 131 2-134 5-137 (138)
7 2ck3_H ATP synthase delta chai 100.0 2.7E-30 1.1E-34 208.5 -0.8 122 5-126 14-137 (146)
8 2w6j_H F1-ATPase delta subunit 99.9 9.3E-30 3.9E-34 205.2 -0.8 118 5-122 36-155 (168)
9 3hqx_A UPF0345 protein aciad03 86.5 1.7 7.3E-05 22.3 7.3 82 1-83 4-99 (111)
10 3eo6_A Protein of unknown func 49.7 13 0.00055 16.8 8.3 76 1-77 2-89 (106)
11 1vhz_A ADP compounds hydrolase 34.6 22 0.00094 15.4 5.2 53 1-54 1-63 (198)
12 1u8s_A Glycine cleavage system 23.8 25 0.0011 15.1 1.4 22 88-109 149-170 (192)
No 1
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E
Probab=100.00 E-value=1.6e-32 Score=222.42 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=114.1
Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE
Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135)
++||+|+||||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++++..++.+..|+|+|||++|.+|.|+||+
T Consensus 1 ~~Tf~l~IvtP~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~~v~Ila 80 (138)
T 1aqt_A 1 GSTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 80 (138)
T ss_dssp -CCEEEEEEESSCEEEEEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEEEEE
T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCCCEEEECCCEEEEEECCCCEEEEEEECCEEEECCCEEEEEE
T ss_conf 95699999979964883578999997694670634897212144016779999759978999983889998199599993
Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHHHHH
Q ss_conf 1122076859999999999999996507888999999----9999999999886
Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQM----EQLLVDLSCLRRR 133 (135)
Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~----~~~~~~l~~~r~~ 133 (135)
++|++.++||.+++++.+++|+++|++..++.+..++ .+++.+++.+++.
T Consensus 81 ~~a~~~~~Id~~~~~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~ 134 (138)
T 1aqt_A 81 DTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELT 134 (138)
T ss_dssp SSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 530883549999999999999999862877399999999999999999999998
No 2
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=99.98 E-value=2.6e-32 Score=221.14 Aligned_cols=128 Identities=20% Similarity=0.357 Sum_probs=107.8
Q ss_pred EEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEEC
Q ss_conf 02699984886375221319999605733577689800266706880799626884035422675699949969999811
Q gi|254780614|r 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSET 85 (135)
Q Consensus 6 ~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~ 85 (135)
+|+|+|+||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++++. +++++.|||+|||++|.+|+|+||++.
T Consensus 2 t~~l~IvtP~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~v~i~~-~~~~~~~~v~gG~~~v~~~~v~Ila~~ 80 (138)
T 2rq6_A 2 VMTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQ-DREWVAIALMGGFAEVENNEVTILVNG 80 (138)
T ss_dssp CEEEEEECSSSEEEEEEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEES-SSCEEEEEECSEEEEECSSCEEEEESC
T ss_pred EEEEEEECCCCEEEEEEEEEEEEECCCCCCEECCCCCCCEEEEECCEEEEEE-CCCEEEEEEECCEEEECCCEEEEEEEE
T ss_conf 7899999799548844678999977946614058980406774087899997-783799997377799829999999523
Q ss_pred CEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2207685999999999999999650788899999999999999998860
Q gi|254780614|r 86 ILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134 (135)
Q Consensus 86 a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~~~ 134 (135)
|++.++||.+++++.++++++++++..+.+......++...+.++++|+
T Consensus 81 a~~~~eID~~~a~~~~~~a~~~l~~~~~~~~~~~~~~a~~al~rA~arL 129 (138)
T 2rq6_A 81 AERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARL 129 (138)
T ss_dssp EECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred EEEHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6853018999999999999999862654413899999999999999999
No 3
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=99.97 E-value=3.2e-31 Score=214.29 Aligned_cols=114 Identities=17% Similarity=0.317 Sum_probs=105.7
Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE
Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998
Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135)
Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135)
|++|+|+|+||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++++. +++++.|+|+|||++|.+|.|+|++
T Consensus 1 M~tl~l~IvtP~~~~~~~~v~~v~~p~~~G~~giLp~H~p~it~L~~G~~~i~~-~~~~~~~~v~gG~~~v~~~~v~Ila 79 (133)
T 2e5y_A 1 MKTIHVSVVTPDGPVYEDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKK-GGKTQYIAVSGGFLEVRPDKVTILA 79 (133)
T ss_dssp CCCEEEEEEETTEEEEEEEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCCEECCCCCCCEEECCCCEEEEEE-CCCEEEEEECCCEEEEECCEEEEEE
T ss_conf 974799999599538944688999966948724247982215773464799998-3554899952756999799999996
Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 11220768599999999999999965078889999
Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118 (135)
Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~ 118 (135)
++|++.++||.+++++.+++|++++++..+..+..
T Consensus 80 ~~a~~~~eId~~~a~~~~~~a~~~l~~~~~~~~~~ 114 (133)
T 2e5y_A 80 QAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFK 114 (133)
T ss_dssp SSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHH
T ss_pred EEEEEHHHCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 04687311899999999999999987287629999
No 4
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.6e-31 Score=211.63 Aligned_cols=132 Identities=19% Similarity=0.389 Sum_probs=112.3
Q ss_pred CCCCEEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECC-EE
Q ss_conf 84440269998488637522-13199996057335776898002667068807996268840354226756999499-69
Q gi|254780614|r 2 SLVNDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPS-HC 79 (135)
Q Consensus 2 ~M~~~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~-~v 79 (135)
.++++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|+||+++|+.++ +++.|||+|||++|.+| .|
T Consensus 27 ~~~~~l~L~ivtP~~~v~~~~~V~~V~lp~~eG~~gILp~H~p~it~L~pG~v~i~~~~-~~~~~~V~gGf~eV~~~~~v 105 (160)
T 2xok_H 27 AASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGS-NSKKFFISGGFATVQPDSQL 105 (160)
T ss_dssp -------CCCBCSSCBCCC--CCSEEEEECSSSEEEEESSCCCCEEEECSSCEEECSSS-CCEEECCCCEEEEECTTSCE
T ss_pred CCCCCEEEEEECCCCEEECCCCEEEEEEECCCCCEEECCCCCCEEEEECCCEEEEECCC-CEEEEEECCCCEEEECCCEE
T ss_conf 67782499998697007868945899996694670433798052667238579996178-61899982860899279889
Q ss_pred EEEEECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99981122076859999999999999996507888999999999999999988609
Q gi|254780614|r 80 TVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRIQ 135 (135)
Q Consensus 80 ~Il~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~~~~ 135 (135)
+||++.|++.++||.+++++.+++|++++++..+.+ ..++...+..++.+++.+|
T Consensus 106 ~Ila~~a~~~~eId~~~a~~~~~~ae~~l~~~~~~~-~~~a~~~i~~le~l~~~lk 160 (160)
T 2xok_H 106 CVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDARE-AAEAAIQVEVLENLQSVLK 160 (160)
T ss_dssp EEEESCC-CCTTTC-CHHHHHHHHHHHHHHTC--CT-THHHHHHHHHHHHHHCC--
T ss_pred EEEECEEEEHHHCCHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 999651150403699999999999999871598899-9999999999999999729
No 5
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=99.97 E-value=3.9e-32 Score=220.01 Aligned_cols=110 Identities=23% Similarity=0.398 Sum_probs=102.9
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf 44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il 82 (135)
|+ +|+|+||||++.+|+++|++|++||.+|+|||||||+|+|+.|+||+++|+. ++.++.|||+|||++|.+|+|+||
T Consensus 1 Ma-t~~l~IvtP~~~~~~~~v~~v~~p~~~G~~giLp~H~p~it~L~~G~~~i~~-~~~~~~~~v~gG~~~v~~~~v~Il 78 (135)
T 2qe7_H 1 MA-TVQVDIVTPERKVFQGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQ-GDKETLIAVSGGFLEVRPDKVNIL 78 (135)
T ss_dssp CC-CCEEEEBCSSCBCCCSCCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCT-TSCCBCCBCCSCCEEECSSEEEEC
T ss_pred CC-EEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCCEEEECCCCCEEECC-CCCEEEEECCCCEEEEECCEEEEE
T ss_conf 97-3699999798448834688999956946715448983527883588401015-773378861578899979999999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 81122076859999999999999996507888
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICDV 114 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~ 114 (135)
+++|++.++||.+++++.+++|++++++..+.
T Consensus 79 a~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~ 110 (135)
T 2qe7_H 79 ADTAELPEEIDVERAKKAKARHETILKRLDKT 110 (135)
T ss_dssp CSSCBCTTTSCHHHHHHHHHTTTTTTTTCCSS
T ss_pred ECCEEEHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 30138550289999999999999998635634
No 6
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3oe7_H*
Probab=99.96 E-value=1.2e-30 Score=210.63 Aligned_cols=131 Identities=20% Similarity=0.387 Sum_probs=109.2
Q ss_pred CCCCEEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEC-CEE
Q ss_conf 84440269998488637522-1319999605733577689800266706880799626884035422675699949-969
Q gi|254780614|r 2 SLVNDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVP-SHC 79 (135)
Q Consensus 2 ~M~~~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~-~~v 79 (135)
+++++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++++. +++++.|||+|||++|.+ |.|
T Consensus 5 ~~~~~l~l~IvtP~~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gG~~~v~~~~~v 83 (138)
T 3oee_H 5 AASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME-GSNSKKFFISGGFATVQPDSQL 83 (138)
T ss_dssp ------CEEEECSSCBCCC--CCSCEECCCSSSCCEECTTCCCCEEEECSEEEEECS-SSCCEEEEECCEEEEECTTSCE
T ss_pred CCCCCEEEEEECCCCCEECCCCEEEEEEECCCCCCEECCCCCCCEEECCCCEEEEEC-CCCEEEEEEECCEEEEECCCEE
T ss_conf 678836999986964067788479999966845832047883513562476699961-6860899992644999279889
Q ss_pred EEEEECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998112207685999999999999999650788899999999999999998860
Q gi|254780614|r 80 TVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134 (135)
Q Consensus 80 ~Il~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r~~~ 134 (135)
+|+++.|++.++||.+++++.++++++++.+..+.+. .++...+..++.+++.+
T Consensus 84 ~Ila~~a~~~~eid~~~a~~~~~~a~~~l~~~~~~~~-~~a~~~~~~l~~l~~~l 137 (138)
T 3oee_H 84 CVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREA-AEAAIQVEVLENLQSVL 137 (138)
T ss_dssp EEECSCC-CCSSCC-CCSSSSTTHHHHHTSCSSSSGG-GTTTHHHHHHHTTSCC-
T ss_pred EEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 9994200404037999999999999988705987899-99999999999999971
No 7
>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Probab=99.95 E-value=2.7e-30 Score=208.53 Aligned_cols=122 Identities=23% Similarity=0.422 Sum_probs=108.9
Q ss_pred CEEEEEEECCCCEEE-CCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEE-CCEEEEE
Q ss_conf 402699984886375-22131999960573357768980026670688079962688403542267569994-9969999
Q gi|254780614|r 5 NDLHFELVSPEKCVF-SGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIV-PSHCTVL 82 (135)
Q Consensus 5 ~~~~l~ivtP~~~i~-~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~-~~~v~Il 82 (135)
++|+|+|+||++.+| +++|++|++||.+|+|||||||+|+|+.|+||+++|+..+|++..|||+|||+++. +|.|+||
T Consensus 14 ~~l~l~ivtP~~~i~~~~~V~~V~lp~~~G~~GILp~H~p~it~L~pG~l~i~~~~g~~~~~~v~~G~~~v~~~~~v~Il 93 (146)
T 2ck3_H 14 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLL 93 (146)
T ss_dssp ---CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------CEE
T ss_pred CEEEEEEECCCCEEECCCCEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCEEECCCCEEEEE
T ss_conf 75899999798206778858999996695682544898242667169879999679978998964780587079989999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 81122076859999999999999996507888999999999999
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVD 126 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~ 126 (135)
+++|++.++||.+++++.++++++++++..++..+......+..
T Consensus 94 a~~a~~~~eiD~~~a~~~~~~a~~~l~~~~~~~~r~~~~~~le~ 137 (146)
T 2ck3_H 94 AEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEA 137 (146)
T ss_dssp BSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 72658311099999999999999998618777999999999999
No 8
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Probab=99.95 E-value=9.3e-30 Score=205.17 Aligned_cols=118 Identities=23% Similarity=0.439 Sum_probs=107.2
Q ss_pred CEEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEC-CEEEEE
Q ss_conf 40269998488637522-1319999605733577689800266706880799626884035422675699949-969999
Q gi|254780614|r 5 NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVP-SHCTVL 82 (135)
Q Consensus 5 ~~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~-~~v~Il 82 (135)
++|+|+|+||++.+|++ +|++|++||++|+|||||||+|+|+.|+||+++|+.++|.+..|||+|||+++.+ |.|+||
T Consensus 36 ~kl~l~ivtP~~~v~~~~~V~~V~lp~~eG~~GILp~H~plit~L~pG~i~i~~~~g~~~~~~v~gG~~~v~~~~~V~IL 115 (168)
T 2w6j_H 36 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLL 115 (168)
T ss_dssp ---CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------CEE
T ss_pred CEEEEEEECCCCEEECCCCEEEEEEECCCCCEEECCCCHHHHHEECCCEEEEEECCCCEEEEEECCCCEEEECCCEEEEE
T ss_conf 74799998798228878847999996694571445887646601048818999489977999986996598079979999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8112207685999999999999999650788899999999
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQ 122 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~ 122 (135)
+++|++.++||.+++++.++++++++++..++..+..+..
T Consensus 116 a~~a~~~~eID~~~a~~~~e~a~~~L~~~~~~~~r~~a~~ 155 (168)
T 2w6j_H 116 AEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 155 (168)
T ss_dssp BSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHH
T ss_pred EEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7043802118999999999999999852877799999999
No 9
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP}
Probab=86.45 E-value=1.7 Score=22.31 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCCCCEEEEEEECCCCEEECCEEEEEEEEECCCE---EEE-CCC--------CCEEEEECCCCEEEEEECCC-CEEEEEC
Q ss_conf 9844402699984886375221319999605733---577-689--------80026670688079962688-4035422
Q gi|254780614|r 1 MSLVNDLHFELVSPEKCVFSGEVQSVVLPSELGD---ITV-LVG--------HAPVLTTIKSGIVTISLSCE-EIHRYVV 67 (135)
Q Consensus 1 m~M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~---~gI-Lp~--------H~p~i~~L~~G~i~i~~~~~-~~~~~~V 67 (135)
|+++.==.++|+.--.+.|+|.|.+..+-..+|. +|| +|+ ++|=+..+..|.+.+..++. +|+ -+-
T Consensus 4 ms~~~f~nVtv~kkaNvYFdGkV~S~~~~~~dG~~kTlGVm~pGe~~Y~F~T~~~E~MeIvsG~l~V~Lpg~~ew~-~~~ 82 (111)
T 3hqx_A 4 MSSAQFDHVTVIKKSNVYFGGLCISHTVQFEDGTKKTLGVILPTEQPLTFETHVPERMEIISGECRVKIADSTESE-LFR 82 (111)
T ss_dssp --CCCCCSCEECSSCEEETTTTEEEEEEECTTSCEEEEEEECCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCE-EEE
T ss_pred CCHHHCCCEEEEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEEEEECCCCCCCE-EEC
T ss_conf 5874637789999947789887899999928999888999915751278759996899999608999969986557-957
Q ss_pred CCCEEEEECCE-EEEEE
Q ss_conf 67569994996-99998
Q gi|254780614|r 68 IGGICDIVPSH-CTVLS 83 (135)
Q Consensus 68 ~gG~~~v~~~~-v~Il~ 83 (135)
.|-..+|-.|. -.|-+
T Consensus 83 aGesF~VpanssF~lkv 99 (111)
T 3hqx_A 83 AGQSFYVPGNSLFKIET 99 (111)
T ss_dssp TTCEEEECTTCEEEEEC
T ss_pred CCCEEEECCCCEEEEEE
T ss_conf 99869968998799998
No 10
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=49.67 E-value=13 Score=16.83 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=51.7
Q ss_pred CCCCCEEE-EEEECCCCEEECCEEEEEEEEECCCEE---EEC-CC------CCEEEEECCCCEEEEEECCC-CEEEEECC
Q ss_conf 98444026-999848863752213199996057335---776-89------80026670688079962688-40354226
Q gi|254780614|r 1 MSLVNDLH-FELVSPEKCVFSGEVQSVVLPSELGDI---TVL-VG------HAPVLTTIKSGIVTISLSCE-EIHRYVVI 68 (135)
Q Consensus 1 m~M~~~~~-l~ivtP~~~i~~~~v~~v~~p~~~G~~---gIL-p~------H~p~i~~L~~G~i~i~~~~~-~~~~~~V~ 68 (135)
|+-...|. +.|..--.+.|+|.|.+..+-..||.. ||+ || +.+=+..+..|.+.++.++. +|+. +-.
T Consensus 2 m~~~~qf~~vsv~k~ANvYFDGkV~S~~v~~~dG~~kTlGVm~PGeY~F~T~~~E~MeIvsG~l~V~Lpg~~ew~~-~~a 80 (106)
T 3eo6_A 2 MAPDQQVPATALGKSSRISLDGRRSERSVILADGSMHSLTLLHPGVYTLSSEVAETIRVLSGMAYYHAEGANDVQE-LHA 80 (106)
T ss_dssp CCGGGEEEEEEEESCCEEETTTTEEEEEEEETTSCEEEEEEECSEEEEECCSSCEEEEEEEEEEEEECTTCSSCEE-EET
T ss_pred CCHHHCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCEE-ECC
T ss_conf 8868803750796886699998489999991899865899996207886599958999985089999799754179-559
Q ss_pred CCEEEEECC
Q ss_conf 756999499
Q gi|254780614|r 69 GGICDIVPS 77 (135)
Q Consensus 69 gG~~~v~~~ 77 (135)
|-..+|-.|
T Consensus 81 GesF~Vpan 89 (106)
T 3eo6_A 81 GDSMVIPAN 89 (106)
T ss_dssp TCEEEECSS
T ss_pred CCEEEECCC
T ss_conf 977997899
No 11
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=34.62 E-value=22 Score=15.36 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCCCEEEE-EEECCCCEEECC---EEEEEEEEECCCEE---E-ECCCCCEE--EEECCCCEEE
Q ss_conf 984440269-998488637522---13199996057335---7-76898002--6670688079
Q gi|254780614|r 1 MSLVNDLHF-ELVSPEKCVFSG---EVQSVVLPSELGDI---T-VLVGHAPV--LTTIKSGIVT 54 (135)
Q Consensus 1 m~M~~~~~l-~ivtP~~~i~~~---~v~~v~~p~~~G~~---g-ILp~H~p~--i~~L~~G~i~ 54 (135)
|+|+.+++= +|+. .+.+|++ .|....+...+|.- . +.++|... |.....+.+.
T Consensus 1 m~m~k~~~k~~i~~-~~~v~~~~~f~v~~~~v~~pnG~~~~~~~~~~~~~~~v~vv~~~~~~il 63 (198)
T 1vhz_A 1 MSLSKSLQKPTILN-VETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLI 63 (198)
T ss_dssp -CCCCCCCCCEEEE-EEEEEECSSCEEEEEEEECTTSCEEEEEEECCCCCCEEEEEEEETTEEE
T ss_pred CCCCCCCCCCEEEE-EEEEEECCEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCEEE
T ss_conf 98887687987842-3999878989999999997999989999999689879999992099999
No 12
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=23.79 E-value=25 Score=15.05 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.0
Q ss_pred EHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 0768599999999999999965
Q gi|254780614|r 88 PMDNACLQALEKRIDEVCSDLN 109 (135)
Q Consensus 88 ~~~~iD~~~a~~~~e~a~~~l~ 109 (135)
.+.+.|.+.+++.++.....++
T Consensus 149 vp~~~d~~~l~~~L~~L~~el~ 170 (192)
T 1u8s_A 149 VDSGCNLMQLQEEFDALCTALD 170 (192)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999999859
Done!