RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
(135 letters)
>gnl|CDD|173198 PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 133
Score = 98.3 bits (245), Expect = 6e-22
Identities = 45/121 (37%), Positives = 76/121 (62%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
HF+LV PE+ ++SGEV++V LP G++TVL GHAPVLTT+K G++T++ + R
Sbjct: 4 FHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIY 63
Query: 67 VIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVD 126
V GG +I P+ TVL+E P++ + +++ I+ V + + D+D+R + +V
Sbjct: 64 VRGGFAEIGPTSVTVLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQ 123
Query: 127 L 127
+
Sbjct: 124 M 124
>gnl|CDD|179070 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.
Length = 135
Score = 92.9 bits (232), Expect = 2e-20
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
L ++VSPE ++SGEV+ VV+P G++ +L GHAP+LT +K G+V I E
Sbjct: 2 ATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEV 61
Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
V GG ++ P TVL+++ D+ E+ + L N D +
Sbjct: 62 IAVSGGFLEVQPDKVTVLADSAERADDIDEARAEEAKERAEEALENKHD---DVDYARAQ 118
Query: 125 VDLSCLRRRIQ 135
L+ R++
Sbjct: 119 AALARAIARLR 129
>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 135
Score = 82.1 bits (203), Expect = 4e-17
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 8 HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVV 67
HF+LVSPEK FSGEV V +P GD VL GHAPV+ I+ GI+T++ + + VV
Sbjct: 5 HFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQ-QKIVV 63
Query: 68 IGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNN 110
+GG+ ++ TVL++ + + L I E+ + L
Sbjct: 64 LGGLAEVSEKGLTVLADVATSVADLDLAQFAATIAEMEAQLAG 106
>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta
in mitochondria). This model describes one of the five
types of subunits in the F1 part of F1/F0 ATP
synthases. Members of this family are designated
epsilon in bacterial and chloroplast systems but
designated delta in mitochondria, where the counterpart
of the bacterial delta subunit is designated OSCP. In a
few cases (Propionigenium modestum, Acetobacterium
woodii) scoring above the trusted cutoff and designated
here as exceptions, Na+ replaces H+ for translocation.
Length = 130
Score = 80.8 bits (200), Expect = 1e-16
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
L E+V+PE ++SGEV+SV+LP G++ +L GHAP++T +K G+V I ++
Sbjct: 2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIA 61
Query: 67 VIGGICDIVPSHCTVLSET 85
V GG ++ P T+L++
Sbjct: 62 VSGGFAEVQPDKVTILADG 80
>gnl|CDD|184058 PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 88
Score = 79.8 bits (197), Expect = 2e-16
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSC----EE 61
LHFELV+PE+ + SGEV VV+P GD VL GHAP +TT++ G VT+ S E
Sbjct: 3 KLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEV 62
Query: 62 IHRYVVIGGICDIVPSHCTVLSE 84
H V GG ++ T+L+E
Sbjct: 63 FH---VQGGFAEVNEKGLTILAE 82
>gnl|CDD|106400 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 136
Score = 70.0 bits (171), Expect = 2e-13
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEI 62
+ L F+LVSPE+ + S + +V +P GD+T + GHAP +TT++ GI+
Sbjct: 1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAH-GPSGT 59
Query: 63 HRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDE 103
Y V GG +I + +VL+E +P++ L++ I E
Sbjct: 60 QEYAVTGGFAEINATSISVLAEKAIPVEELTGAVLDEFIAE 100
>gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 136
Score = 65.7 bits (161), Expect = 3e-12
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
L E+V+PEK V S EV V P LG+ VL GHAP LT +K G +T + H
Sbjct: 5 LKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKT-HYVA 63
Query: 67 VIGGICDIVPSHCTVLSET 85
V GG ++ + TVL+ET
Sbjct: 64 VNGGFAEVSNNKVTVLAET 82
>gnl|CDD|184055 PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 89
Score = 59.6 bits (145), Expect = 2e-10
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRY 65
LH +V+ ++ V+SGE VV + GDI +L GH P+L ++SG VT+ E
Sbjct: 5 TLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISA 64
Query: 66 VVIGGICDIVPSHCTVLSET 85
V GG + TVL+E
Sbjct: 65 AVDGGFISFDSNKLTVLAER 84
>gnl|CDD|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 127
Score = 54.5 bits (131), Expect = 9e-09
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
L ++SPEK ++ GEV S+++P G +L HAP++ T+ G++ I E++ R
Sbjct: 4 KKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIR-KGEKLKR 62
Query: 65 YVVIGGICDIVPSHCTVLSE 84
V GG C++ + ++L++
Sbjct: 63 ISVEGGFCEVKDNQISILTD 82
>gnl|CDD|106409 PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 145
Score = 47.0 bits (111), Expect = 1e-06
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
L ++VSP VF GE V L G++ + GH +L+T+ +G+V + +
Sbjct: 6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKD-QHTDVLY 64
Query: 67 VIGGICDIVPSHCTVLSETILPMDN 91
V GGI ++ P+ T++ + + +N
Sbjct: 65 VSGGIVEVTPTRVTIMVDDMERAEN 89
>gnl|CDD|173197 PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 139
Score = 47.3 bits (112), Expect = 1e-06
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
+H E+V+ E+ V S +V + P++ G + +L HAP+LT ++ G + I + +
Sbjct: 3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRT-PFA 61
Query: 67 VIGGICDIVPSHCTVLSETI 86
+ GG +++P T+L++T
Sbjct: 62 ISGGFMEVLPHRVTILADTA 81
>gnl|CDD|100879 PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Validated.
Length = 112
Score = 43.3 bits (102), Expect = 2e-05
Identities = 20/86 (23%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 10 ELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR----Y 65
++++P F + + V +P E G VL H P++ ++K+G+V + + +++H+ Y
Sbjct: 8 KIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYI--DDMHKSENTY 65
Query: 66 VVIGGICDIVPSHCTVLSETILPMDN 91
++ GG+ ++ ++ + +ET + + N
Sbjct: 66 LISGGVTEVTGNYINIATETAINVTN 91
>gnl|CDD|184059 PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 132
Score = 42.8 bits (101), Expect = 3e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTI 55
N++ +++PEK + GEV+ V+ GDI +L H P++T +K I I
Sbjct: 2 NNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKI 52
>gnl|CDD|179059 PRK00539, atpC, F0F1 ATP synthase subunit epsilon; Validated.
Length = 133
Score = 32.6 bits (74), Expect = 0.037
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
L F ++SP ++ S + + G + AP++ I+S + I+ + ++ R
Sbjct: 4 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFA-DKTKRSA 62
Query: 67 VIG-GICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
+IG G+ I + + +E + D KR E+ + + D ++EQ L
Sbjct: 63 IIGAGLLLIKKTEAKIFTENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNL 121
>gnl|CDD|177978 PLN02344, PLN02344, chorismate mutase.
Length = 284
Score = 28.0 bits (63), Expect = 0.87
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 90 DNACLQALEKRI 101
D ACLQAL KRI
Sbjct: 170 DLACLQALSKRI 181
>gnl|CDD|172059 PRK13451, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 101
Score = 27.8 bits (62), Expect = 0.99
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
+ ++V+P V+ E V + G++ +L AP++ + V I S ++ + Y
Sbjct: 1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIK-SGDDEYEYK 59
Query: 67 VIGG--ICDIVPSHCTVLSETI 86
V G CD + +++E
Sbjct: 60 VADGFLHCD--GKNVIIITEEA 79
>gnl|CDD|182994 PRK11145, pflA, pyruvate formate lyase-activating enzyme 1;
Provisional.
Length = 246
Score = 26.5 bits (59), Expect = 2.3
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 64 RYVVIGGICDIVPSHCTVLSETILPMDN 91
RYVV+ G D S L E I M N
Sbjct: 167 RYVVVPGWTDDDDS-AHRLGEFIKDMGN 193
>gnl|CDD|162325 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. Sarcosine oxidase catalyzes the
oxidative demethylation of sarcosine to glycine. The
reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 407
Score = 26.3 bits (58), Expect = 2.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 69 GGICDIVPSHCTVLSETILP 88
GGI D+ P ++ +T LP
Sbjct: 336 GGIVDVTPDGSPIIGKTPLP 355
>gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 25.3 bits (55), Expect = 5.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 92 ACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
A L+A+EK+IDEV D D QLL
Sbjct: 369 AELKAIEKKIDEVVEDAVEFADASPLPPRSQLL 401
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.139 0.412
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,151,990
Number of extensions: 123371
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 27
Length of query: 135
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 52
Effective length of database: 4,201,009
Effective search space: 218452468
Effective search space used: 218452468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.0 bits)