RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
(135 letters)
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} (A:)
Length = 138
Score = 100 bits (251), Expect = 6e-23
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
+ H ++VS E+ +FSG V+ + + G++ + GHAP+LT IK G++ I
Sbjct: 2 STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEF 61
Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
+ GGI ++ P + TVL++T + + + + +++ Q L
Sbjct: 62 IYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis,
F1-ATPase, single particle analysis, thermoalkaliphilic,
hydrolase; 3.06A {Bacillus SP} (H:)
Length = 135
Score = 98.4 bits (245), Expect = 3e-22
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
+ ++V+PE+ VF GE V+ G++ V+ GH P++T +K+ V I +E
Sbjct: 2 ATVQVDIVTPERKVFQGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKE-TL 60
Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
V GG ++ P +L++T + ++ +K + L + D+ + +
Sbjct: 61 IAVSGGFLEVRPDKVNILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKR- 119
Query: 125 VDLSCLRRRIQ 135
L R+Q
Sbjct: 120 -ALERAEVRLQ 129
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase,
epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus
SP} PDB: 2e5t_A 2e5u_A (A:)
Length = 133
Score = 97.2 bits (242), Expect = 8e-22
Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
+H +V+P+ V+ +V+ V + ++ G++ +L GH P++ ++ + +
Sbjct: 2 KTIHVSVVTPDGPVYEDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKT-QY 60
Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
V GG ++ P T+L++ ++ + + + L + D + E L
Sbjct: 61 IAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELAL 120
>2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase
(H+ transporting), F1FO, F1- ATPase, hydrolase; HET:
ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H (H:)
Length = 138
Score = 94.1 bits (234), Expect = 6e-21
Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 5/132 (3%)
Query: 5 NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63
+ L + P + ++SG EV V LP++ G I VL H P + + G+V +
Sbjct: 8 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 67
Query: 64 RYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQL 123
++ G S V + P+++ + ++ + E ++++ + +
Sbjct: 68 FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAA----EA 123
Query: 124 LVDLSCLRRRIQ 135
+ + L
Sbjct: 124 AIQVEVLENLQS 135
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase,
epsilon subunit, ATP synthesis, CF1, hydrogen ION
transport, hydrolase; NMR {Thermosynechococcus
elongatus} PDB: 2rq7_A (A:1-86)
Length = 86
Score = 87.0 bits (216), Expect = 7e-19
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
+ +++P+K V+ + V+LPS G + +L HAP+LT +++G++ + E
Sbjct: 3 MTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREW-VAIA 61
Query: 67 VIGGICDIVPSHCTVLSETILPMDN 91
++GG ++ + T+L D
Sbjct: 62 LMGGFAEVENNEVTILVNGAERGDT 86
>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP
phosphorylase (H+ transporting), F1FO ATP synthase,
F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A
{Bos taurus} (H:1-100)
Length = 100
Score = 80.1 bits (198), Expect = 1e-16
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 5 NDLHFELVSPEKCVF-SGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63
+ F SP + F S V+ V +P++ G +L H P L ++ G+V +
Sbjct: 14 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 73
Query: 64 RYVVIGGICDIVP-SHCTVLSETILPM 89
+Y V G + S +L+E + +
Sbjct: 74 KYFVSSGSVTVNADSSVQLLAEEAVTL 100
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+
transporting), transit peptide, F1FO ATP synthase, ATP
phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
(H:1-123)
Length = 123
Score = 78.7 bits (194), Expect = 2e-16
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 5 NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63
+ F SP + F+ V+ V +P++ G +L H P L ++ G+V +
Sbjct: 36 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 95
Query: 64 RYVVIGGICDIVP-SHCTVLSETILPMD 90
+Y V G + S +L+E + +D
Sbjct: 96 KYFVSSGSVTVNADSSVQLLAEEAVTLD 123
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose
isomerization, isomerase; 2.20A {Klebsiella SP}
(A:1-115,A:187-490)
Length = 419
Score = 31.2 bits (69), Expect = 0.058
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
E+ + + + D+V + V + + L+K + + D F
Sbjct: 99 VAEMKKRN-MRLMIDVVIDNPKVRED----LYAMLRFWLDKGVSGMRFDTVATYSKIPGF 153
Query: 119 Q 119
Sbjct: 154 P 154
>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A
{Murid herpesvirus 4} (A:1-210)
Length = 210
Score = 30.5 bits (68), Expect = 0.088
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 39 VGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALE 98
+G AP L+T SG+ T S+ +I R D + +HC +ET + C L+
Sbjct: 3 LGLAPALSTHSSGVSTQSVDLSQIKR-------GDEIQAHCLTPAETEV---TECAGILK 52
Query: 99 KRIDEVCSDLNNICDVDQRF 118
+ + +L +C+V +
Sbjct: 53 DVLSKNLHELQGLCNVKNKM 72
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase
family, (beta/alpha)8 barrel; 1.60A {Pseudomonas
mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A
2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* (A:1-102,A:174-475)
Length = 404
Score = 29.3 bits (64), Expect = 0.18
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
E+ + + + D+V + E + L+K + + D F
Sbjct: 86 MAELKKRG-MRLMVDVVIDTPKLREE----LYAMLRFWLDKGVSGMRFDTVATYSKTPGF 140
Query: 119 QMEQL 123
Sbjct: 141 PDLTP 145
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET:
MAL ABD; 1.70A {Geobacillus stearothermophilus}
(A:1-130,A:202-404)
Length = 333
Score = 28.0 bits (61), Expect = 0.46
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
+ H+ I I D VP + T+ + +A +Q + D + D +
Sbjct: 114 VNDAHQNG-IKVIVDFVPENGTIAQY----LTDAAVQLVAHGADGLRIDAVKHFNSGFSK 168
Query: 119 QM 120
+
Sbjct: 169 SL 170
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family,
hydrolase; 2.00A {Thermoactinomyces vulgaris}
(A:124-242,A:299-500)
Length = 321
Score = 27.2 bits (59), Expect = 0.74
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
+E HR I I D V + V + + +E+ ID D+ N D
Sbjct: 103 VDEAHRRG-IKIILDAVFENPEVKEY----LFDVARFWMEQGIDGWRLDVANEVDHAFWR 157
Query: 119 QMEQLL 124
+ +L+
Sbjct: 158 EFRRLV 163
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI,
structural genomics of pathogenic protozoa consortium,
SGPP, ANK repeat; 2.90A {Leishmania major} (A:272-364)
Length = 93
Score = 27.0 bits (59), Expect = 0.99
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 76 PSH--CTVLSETILPMD----------NACLQALEKRIDEVCSDLN 109
P H TVL + ++ +D LQ L++++DEV LN
Sbjct: 5 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN 50
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase;
3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657)
Length = 300
Score = 25.6 bits (56), Expect = 2.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 94 LQALEKRIDEVCSDLNNICDVDQRFQME 121
+ L+KRID V + N + + FQ E
Sbjct: 4 VNELKKRIDSVEPEFNKLTGIRDEFQKE 31
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics,
PSI-2, protein structure initiative; 2.01A
{Desulfitobacterium hafniense dcb-2} (A:)
Length = 270
Score = 25.6 bits (56), Expect = 2.6
Identities = 6/43 (13%), Positives = 11/43 (25%)
Query: 8 HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKS 50
+ + G +VGH P L ++
Sbjct: 116 VIFSDAKRVEDRXNDPFIXSQNEVKGKKVGVVGHFPHLESLLE 158
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine
metabolism, homocysteinemia, zinc, thiol alkyl transfer;
HET: CBH CIT; 2.05A {Homo sapiens} (A:)
Length = 406
Score = 25.2 bits (54), Expect = 3.4
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 45 LTTIKSGIVTISLSCEEIHRYV---------VIGGICDIVPSHCTVLSETILPMDNACLQ 95
L G+ + +I +Y IGG C P H ++E + P
Sbjct: 264 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 323
Query: 96 ALEKRIDEVCSDLNNICD 113
A EK +
Sbjct: 324 ASEKHGSWGSGLDMHTKP 341
>2o36_A ThiMet oligopeptidase; thermolysin-like domain,
substrate-binding channel, hydrolase; 1.95A {Homo
sapiens} PDB: 1s4b_P (A:141-170,A:233-269)
Length = 67
Score = 24.3 bits (53), Expect = 6.9
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 94 LQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134
++ ++K++ +C D N + D + + +L +L LR +
Sbjct: 9 IKRIKKKLSLLCIDFNKNLNEDCKEENSAILKELVTLRAQK 49
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.139 0.412
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,050,890
Number of extensions: 44545
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 22
Length of query: 135
Length of database: 4,956,049
Length adjustment: 79
Effective length of query: 56
Effective length of database: 2,285,454
Effective search space: 127985424
Effective search space used: 127985424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.2 bits)