BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score =  269 bits (688), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MSLVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCE 60
           MSLVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCE
Sbjct: 1   MSLVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCE 60

Query: 61  EIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQM 120
           EIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQM
Sbjct: 61  EIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQM 120

Query: 121 EQLLVDLSCLRRRIQ 135
           EQLLVDLSCLRRRIQ
Sbjct: 121 EQLLVDLSCLRRRIQ 135


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 24.3 bits (51), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 9/31 (29%)

Query: 12  VSPEKCVFSG---------EVQSVVLPSELG 33
            SP   VF+G         E+QS+V+P+ LG
Sbjct: 294 TSPGTAVFAGIEGTRALLVEIQSLVVPTSLG 324


>gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 428

 Score = 23.9 bits (50), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 71  ICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQ--RFQMEQLL 124
           I DI P H   L    +  + AC       + E+  DLN     DQ  +F +E++L
Sbjct: 364 ISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLN-----DQVLQFSIEEIL 414


>gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 337

 Score = 23.1 bits (48), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8  HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTI 55
          H   ++P K + SGE  S+   S L  + +      +LTTI+  ++ I
Sbjct: 10 HAHSIAPAKVILSGEYSSLYGASALA-VAITFYLRALLTTIEPSLIRI 56


>gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score = 22.3 bits (46), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 5/29 (17%)

Query: 34  DITVLVGHAPVLTTIKSGIVTISLSCEEI 62
            +++L GH PVL TI     T+ ++ E+I
Sbjct: 164 QLSMLYGHFPVLKTI-----TMDITFEKI 187


>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 21.9 bits (45), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 37  VLVGHAPVLTTIKSGIVTISLSCEEIHR 64
           V +GH  +L      +V++SL+ E++++
Sbjct: 108 VTIGHDGILLVSDRDMVSVSLTVEDLYK 135


>gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 337

 Score = 21.2 bits (43), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 3   LVNDLHFELVSPEKCVFSGEVQSVVLPSELGD 34
           +VND   EL+S    + +     ++ PSE+ D
Sbjct: 149 IVNDETIELISHAAVIQADAGADIIAPSEMMD 180


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.139    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,196
Number of Sequences: 1233
Number of extensions: 3225
Number of successful extensions: 15
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 12
length of query: 135
length of database: 328,796
effective HSP length: 65
effective length of query: 70
effective length of database: 248,651
effective search space: 17405570
effective search space used: 17405570
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 34 (17.7 bits)