HHsearch alignment for GI: 254780615 and conserved domain: CHL00059
>CHL00059 atpA ATP synthase CF1 alpha subunit.
Probab=100.00 E-value=0 Score=926.98 Aligned_cols=428 Identities=22% Similarity=0.321 Sum_probs=401.8
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
T Consensus 21 ~~~~~~~e~G~V~~v~DGia~v~GL~~~--~~~Elv~f~~g---~~G~vlnLe~~~vg~vllg~~~~i~eG~~V~~TG~~ 95 (501)
T CHL00059 21 NREVKIVNTGTVLQVGDGIARIYGLDEV--MAGELVEFEEG---TIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKI 95 (501)
T ss_pred CCCCCCEEEEEEEEECCCEEEEECCCCC--CCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCE
T ss_conf 8777520347999970627998267312--55864996899---879998437880699997698776899988857972
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
T Consensus 96 l~VPVG~~lLGRVvd~LG~PiDgkg~i~~~~~~pie~~aP~~~~R~~V~epL~TGIkaID~l~PiGrGQR~lI~Gd~gvG 175 (501)
T CHL00059 96 AQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTG 175 (501)
T ss_pred EEEECCHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC
T ss_conf 47745752314740687754479998898750104379978504466674232342111003676677566775578844
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
T Consensus 176 KTtl~~d~Iin-qk~~~vicVyvaIGeR~reV~~~i~~l~~------------~gam~~TvvV~Atadepa~lr~~Apya 242 (501)
T CHL00059 176 KTAVATDTILN-QKGQNVICVYVAIGQKASSVAQVVTTLQE------------RGAMEYTIVVAETADSPATLQYLAPYT 242 (501)
T ss_pred HHHHHHHHHHH-HCCCCCEEEEEEEEEEHHHHHHHHHHHHH------------CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77999999985-24688489999855627789999999975------------697103699961799999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
T Consensus 243 a~aIAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFylhsrLlERa~kl~~~~ggGSiTalpivet 322 (501)
T CHL00059 243 GAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVET 322 (501)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE
T ss_conf 99999999977982899986826988999998986489997667896288785789877650578999884788889982
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
T Consensus 323 ~~~D~s~yIptnviSItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~-~aq~k~~k~va~~lrl~laq~~el~~f~~f~~ 401 (501)
T CHL00059 323 QSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGS-AAQIKAMKQVAGKLKLELAQFAELEAFAQFAS 401 (501)
T ss_pred CCCCCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 38864555541044405742998565552777743454555112561-76789999987787999998999999998623
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 556998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r 398 MDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL 460 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~ 460 (478)
T Consensus 402 --~ld~~t~~~l~rg~r~~e~lkQ~~~----------~p~~~~~q~~~l~a~~~g~ld~~~~~ 452 (501)
T CHL00059 402 --DLDKATQNQLARGQRLRELLKQSQS----------APLTVEEQVATIYTGTNGYLDSLEIG 452 (501)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf --3599999999989999998678889----------99699999999999854986778989