HHsearch alignment for GI: 254780615 and conserved domain: CHL00059

>CHL00059 atpA ATP synthase CF1 alpha subunit.
Probab=100.00  E-value=0  Score=926.98  Aligned_cols=428  Identities=22%  Similarity=0.321  Sum_probs=401.8

Q ss_pred             CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf             76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r    2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ   81 (478)
Q Consensus         2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~   81 (478)
T Consensus        21 ~~~~~~~e~G~V~~v~DGia~v~GL~~~--~~~Elv~f~~g---~~G~vlnLe~~~vg~vllg~~~~i~eG~~V~~TG~~   95 (501)
T CHL00059         21 NREVKIVNTGTVLQVGDGIARIYGLDEV--MAGELVEFEEG---TIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKI   95 (501)
T ss_pred             CCCCCCEEEEEEEEECCCEEEEECCCCC--CCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCE
T ss_conf             8777520347999970627998267312--55864996899---879998437880699997698776899988857972


Q ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf             89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r   82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG  161 (478)
Q Consensus        82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG  161 (478)
T Consensus        96 l~VPVG~~lLGRVvd~LG~PiDgkg~i~~~~~~pie~~aP~~~~R~~V~epL~TGIkaID~l~PiGrGQR~lI~Gd~gvG  175 (501)
T CHL00059         96 AQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTG  175 (501)
T ss_pred             EEEECCHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC
T ss_conf             47745752314740687754479998898750104379978504466674232342111003676677566775578844


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r  162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT  241 (478)
Q Consensus       162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~  241 (478)
T Consensus       176 KTtl~~d~Iin-qk~~~vicVyvaIGeR~reV~~~i~~l~~------------~gam~~TvvV~Atadepa~lr~~Apya  242 (501)
T CHL00059        176 KTAVATDTILN-QKGQNVICVYVAIGQKASSVAQVVTTLQE------------RGAMEYTIVVAETADSPATLQYLAPYT  242 (501)
T ss_pred             HHHHHHHHHHH-HCCCCCEEEEEEEEEEHHHHHHHHHHHHH------------CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf             77999999985-24688489999855627789999999975------------697103699961799999999999999


Q ss_pred             HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf             8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r  242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV  317 (478)
Q Consensus       242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~  317 (478)
T Consensus       243 a~aIAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFylhsrLlERa~kl~~~~ggGSiTalpivet  322 (501)
T CHL00059        243 GAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVET  322 (501)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE
T ss_conf             99999999977982899986826988999998986489997667896288785789877650578999884788889982


Q ss_pred             CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r  318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG  397 (478)
Q Consensus       318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g  397 (478)
T Consensus       323 ~~~D~s~yIptnviSItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~-~aq~k~~k~va~~lrl~laq~~el~~f~~f~~  401 (501)
T CHL00059        323 QSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGS-AAQIKAMKQVAGKLKLELAQFAELEAFAQFAS  401 (501)
T ss_pred             CCCCCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             38864555541044405742998565552777743454555112561-76789999987787999998999999998623


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             556998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r  398 MDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL  460 (478)
Q Consensus       398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~  460 (478)
T Consensus       402 --~ld~~t~~~l~rg~r~~e~lkQ~~~----------~p~~~~~q~~~l~a~~~g~ld~~~~~  452 (501)
T CHL00059        402 --DLDKATQNQLARGQRLRELLKQSQS----------APLTVEEQVATIYTGTNGYLDSLEIG  452 (501)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             --3599999999989999998678889----------99699999999999854986778989