HHsearch alignment for GI: 254780615 and conserved domain: COG0055
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=1046.31 Aligned_cols=458 Identities=72% Similarity=1.112 Sum_probs=447.2
Q ss_pred CCEEEEEEECCEEEEEECC--CCCCCCCEEEECCCC-CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEE
Q ss_conf 4138999955789998166--652314189981699-5599999987089879999814878887888889779848988
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVN--SLPPIFSSLETSDKG-SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVP 85 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~--~~~~i~~~i~~~~~g-~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~Vp 85 (478)
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCCEEEEEEEEEEEEEECCCCCCCHHHHHHEECCCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCCEEEE
T ss_conf 87569999821799980586667204345264357752575306877388838999963756710374775079966875
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCH--HHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 59237655887875230167875300--1100234544410000134200023110023557021541003675666624
Q gi|254780615|r 86 VGEATLGRIMNVIGEPVDDQGAIISS--EKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 86 VG~~lLGRViD~lG~PLDg~g~i~~~--~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT 161 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 161 (468)
T ss_pred CCHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCE
T ss_conf 26322123102047734666888755550201257998355407730443307368998411146864444236775620
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r 164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 (478)
Q Consensus 164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ 243 (478)
T Consensus 162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~v------------l~ktalv~gQMNEpPGaR~RValtGl 229 (468)
T COG0055 162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV------------LDKTALVFGQMNEPPGARMRVALTGL 229 (468)
T ss_pred EEHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCC------------CCCEEEEEEECCCCCCCEEEEHHHHH
T ss_conf 109999999999749868997135321115778999986388------------77326999605799864145511233
Q ss_pred HHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
Q ss_conf 768999866-9967999715599987601245531144101101223566657888763177765325666543047664
Q gi|254780615|r 244 TVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDL 322 (478)
Q Consensus 244 tiAEyfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~ 322 (478)
T Consensus 230 T~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~GSITSiQavyvPaDDl 309 (468)
T COG0055 230 TMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDL 309 (468)
T ss_pred HHHHHHHCCCCCEEEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 19998640038758998425567762313899984569641456740677888899997537888668899998613237
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
T Consensus 310 TDPapattFaHLDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELs 389 (468)
T COG0055 310 TDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELS 389 (468)
T ss_pred CCCCHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf 89525556551344135637678668876658443422015864145899999999999999989999999983832128
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCC
Q ss_conf 8899999999999998349971100005789736159999999999976764468978976418999998877439
Q gi|254780615|r 403 EEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478 (478)
Q Consensus 403 ~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~~~~ 478 (478)
T Consensus 390 eedk~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE~aF~~vG~i~e~~eka~~~ 465 (468)
T COG0055 390 EEDKLTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQAFYMVGSIEEAVEKAKKL 465 (468)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHC
T ss_conf 6678999999999998558620121004899616448999999999847876669888973117489999998740