HHsearch alignment for GI: 254780615 and conserved domain: COG0467

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=98.53  E-value=2.5e-06  Score=60.41  Aligned_cols=197  Identities=17%  Similarity=0.161  Sum_probs=116.0

Q ss_pred             CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             200023110023557--021541003675666624899999998850578852687621643459999998542442001
Q gi|254780615|r  131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID  208 (478)
Q Consensus       131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~  208 (478)
T Consensus         3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g---~d~~   78 (260)
T COG0467           3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFG---WDLE   78 (260)
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEEECCHHHHHHHHHHCC---CCHH
T ss_conf             656899741888836898899789999389986899999999977626-985899992069899999998809---9778


Q ss_pred             CCCCCCCCCCCEEEEEEECCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCH
Q ss_conf             22234443323169997176689678------777777787768999866996799971559998760124553114410
Q gi|254780615|r  209 PRKNNGSAVGSKCSLLYGQMNEPPGA------RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPS  282 (478)
Q Consensus       209 ~~~~~~~~~~~~tv~v~~~~~~~~~~------r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~  282 (478)
T Consensus        79 --~~~~~---g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~~-------  145 (260)
T COG0467          79 --VYIEK---GKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDPAL-------  145 (260)
T ss_pred             --HHHHC---CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCHHH-------
T ss_conf             --97544---40687631211125420104665228999999999998628-988999663077665278257-------


Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC-CCCCC
Q ss_conf             110122356665788876317776532566654304766441058999975034256411566318867-53223
Q gi|254780615|r  283 AVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYP-AIDPL  356 (478)
Q Consensus       283 ~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~P-AId~~  356 (478)
T Consensus       146 ---~-r~~~~~l~~~~~------~~~~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~  208 (260)
T COG0467         146 ---V-RRILLLLKRFLK------KLGVTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRIL  208 (260)
T ss_pred             ---H-HHHHHHHHHHHH------HCCEEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             ---8-999999998765------06848999974433466656--614216899999977722572488899998