HHsearch alignment for GI: 254780615 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=98.53 E-value=2.5e-06 Score=60.41 Aligned_cols=197 Identities=17% Similarity=0.161 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 200023110023557--021541003675666624899999998850578852687621643459999998542442001
Q gi|254780615|r 131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208 (478)
Q Consensus 131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~ 208 (478)
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g---~d~~ 78 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFG---WDLE 78 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEEECCHHHHHHHHHHCC---CCHH
T ss_conf 656899741888836898899789999389986899999999977626-985899992069899999998809---9778
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCH
Q ss_conf 22234443323169997176689678------777777787768999866996799971559998760124553114410
Q gi|254780615|r 209 PRKNNGSAVGSKCSLLYGQMNEPPGA------RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPS 282 (478)
Q Consensus 209 ~~~~~~~~~~~~tv~v~~~~~~~~~~------r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~ 282 (478)
T Consensus 79 --~~~~~---g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~~------- 145 (260)
T COG0467 79 --VYIEK---GKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDPAL------- 145 (260)
T ss_pred --HHHHC---CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCHHH-------
T ss_conf --97544---40687631211125420104665228999999999998628-988999663077665278257-------
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC-CCCCC
Q ss_conf 110122356665788876317776532566654304766441058999975034256411566318867-53223
Q gi|254780615|r 283 AVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYP-AIDPL 356 (478)
Q Consensus 283 ~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~P-AId~~ 356 (478)
T Consensus 146 ---~-r~~~~~l~~~~~------~~~~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~ 208 (260)
T COG0467 146 ---V-RRILLLLKRFLK------KLGVTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRIL 208 (260)
T ss_pred ---H-HHHHHHHHHHHH------HCCEEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf ---8-999999998765------06848999974433466656--614216899999977722572488899998