HHsearch alignment for GI: 254780615 and conserved domain: COG1158

>COG1158 Rho Transcription termination factor [Transcription].
Probab=100.00  E-value=2.3e-37  Score=264.09  Aligned_cols=240  Identities=24%  Similarity=0.367  Sum_probs=197.2

Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHC
Q ss_conf             000134200023110023557021541003675666624899999998850578852687-6216434599999985424
Q gi|254780615|r  125 EQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDS  203 (478)
Q Consensus       125 ~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~  203 (478)
T Consensus       151 E~~~~~~~ls~--RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV---  225 (422)
T COG1158         151 ERENGSTDLST--RVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSV---  225 (422)
T ss_pred             CCCCCCCCCHH--HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHH---
T ss_conf             04788765026--6766526567884656866987873389999999986379964999999347806777788752---


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             42001222344433231699971766896787777777877689998669967999715599987601245531144101
Q gi|254780615|r  204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSA  283 (478)
Q Consensus       204 ~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~  283 (478)
T Consensus       226 ----------------~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLs-  288 (422)
T COG1158         226 ----------------KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-  288 (422)
T ss_pred             ----------------CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEC-
T ss_conf             ----------------406986448886054689999999999988871786899965677899885366799777404-


Q ss_pred             HHCCHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCE----EEEEHHHHHCCCCCCCCCCCC
Q ss_conf             101223566657888763177-765325666543047664410589999750342----564115663188675322355
Q gi|254780615|r  284 VGYQSTLALEMGELQERITTT-LKGSITSVQAIYVPADDLTDPAPATSFTHLDAT----TVLSRQISEKGIYPAIDPLDS  358 (478)
Q Consensus       284 ~gYp~~~f~~~~~l~ERag~~-~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~----ivLsr~la~~g~~PAId~~~S  358 (478)
T Consensus       289 GGvD~nAL~~PKrFFGAARNIEeGGSLTIiATALVdTGSrMDeV---IfEEFKGTGNmEl~LdR~laerRifPAIdi~kS  365 (422)
T COG1158         289 GGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEV---IFEEFKGTGNMELHLDRKLAERRIFPAIDINKS  365 (422)
T ss_pred             CCCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHH---HHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCC
T ss_conf             87385660483554212205545863411111244147751120---253425777507886013444124530203567


Q ss_pred             CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43111620128999999999999999899899
Q gi|254780615|r  359 NSSMLEIDIVGQEHYDVARRVQEILQRYKSLQ  390 (478)
Q Consensus       359 ~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~  390 (478)
T Consensus       366 GTRk-EeLLl~~~~l~k~w~lRr~l~~md~~~  396 (422)
T COG1158         366 GTRK-EELLLSPDELQKMWVLRRILSPMDEID  396 (422)
T ss_pred             CCCH-HHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             7615-765489999999999999736787489