HHsearch alignment for GI: 254780615 and conserved domain: COG1158
>COG1158 Rho Transcription termination factor [Transcription].
Probab=100.00 E-value=2.3e-37 Score=264.09 Aligned_cols=240 Identities=24% Similarity=0.367 Sum_probs=197.2
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHC
Q ss_conf 000134200023110023557021541003675666624899999998850578852687-6216434599999985424
Q gi|254780615|r 125 EQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDS 203 (478)
Q Consensus 125 ~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~ 203 (478)
T Consensus 151 E~~~~~~~ls~--RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV--- 225 (422)
T COG1158 151 ERENGSTDLST--RVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSV--- 225 (422)
T ss_pred CCCCCCCCCHH--HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHH---
T ss_conf 04788765026--6766526567884656866987873389999999986379964999999347806777788752---
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 42001222344433231699971766896787777777877689998669967999715599987601245531144101
Q gi|254780615|r 204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSA 283 (478)
Q Consensus 204 ~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~ 283 (478)
T Consensus 226 ----------------~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLs- 288 (422)
T COG1158 226 ----------------KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS- 288 (422)
T ss_pred ----------------CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEC-
T ss_conf ----------------406986448886054689999999999988871786899965677899885366799777404-
Q ss_pred HHCCHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCE----EEEEHHHHHCCCCCCCCCCCC
Q ss_conf 101223566657888763177-765325666543047664410589999750342----564115663188675322355
Q gi|254780615|r 284 VGYQSTLALEMGELQERITTT-LKGSITSVQAIYVPADDLTDPAPATSFTHLDAT----TVLSRQISEKGIYPAIDPLDS 358 (478)
Q Consensus 284 ~gYp~~~f~~~~~l~ERag~~-~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~----ivLsr~la~~g~~PAId~~~S 358 (478)
T Consensus 289 GGvD~nAL~~PKrFFGAARNIEeGGSLTIiATALVdTGSrMDeV---IfEEFKGTGNmEl~LdR~laerRifPAIdi~kS 365 (422)
T COG1158 289 GGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEV---IFEEFKGTGNMELHLDRKLAERRIFPAIDINKS 365 (422)
T ss_pred CCCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHH---HHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCC
T ss_conf 87385660483554212205545863411111244147751120---253425777507886013444124530203567
Q ss_pred CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43111620128999999999999999899899
Q gi|254780615|r 359 NSSMLEIDIVGQEHYDVARRVQEILQRYKSLQ 390 (478)
Q Consensus 359 ~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~ 390 (478)
T Consensus 366 GTRk-EeLLl~~~~l~k~w~lRr~l~~md~~~ 396 (422)
T COG1158 366 GTRK-EELLLSPDELQKMWVLRRILSPMDEID 396 (422)
T ss_pred CCCH-HHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 7615-765489999999999999736787489