HHsearch alignment for GI: 254780615 and conserved domain: PRK05688
>PRK05688 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=970.85 Aligned_cols=423 Identities=26% Similarity=0.425 Sum_probs=398.3
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCC--CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 76456534138999955789998166652314189981699--5599999987089879999814878887888889779
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKG--SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTG 79 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g--~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg 79 (478)
T Consensus 20 ~~~~~p~~~GrV~~v~G~~ie~~G~~~~iG~~c~i~~~~~~~~~~v~aEVVgf-~~~~v~l~p~g~~~Gi~~G~~V~~~g 98 (451)
T PRK05688 20 SLPAQPVVEGRLLRMVGLTLEAEGLRAAVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVYLMPVGSVAGIAPGARVVPLA 98 (451)
T ss_pred CCCCCCEEEEEEEEEECEEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECC
T ss_conf 77677700369999967499998258874784799868988775468999225-49979999887877889999999689
Q ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 84898859237655887875230167875300110023454441000013420002311002355702154100367566
Q gi|254780615|r 80 TQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAG 159 (478)
Q Consensus 80 ~~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~G 159 (478)
T Consensus 99 ~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~~~~~p~~~~~p~pl~R~~i~epl~TGIraID~l~pigrGQR~gIfggsG 178 (451)
T PRK05688 99 DTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRDPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG 178 (451)
T ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCEECCCEEEECCCCCCCCCEEEECCCCC
T ss_conf 98777758253588888776426899998987345566899883551787862003846884546724675642104889
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 66248999999988505788526876216434599999985424420012223444332316999717668967877777
Q gi|254780615|r 160 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239 (478)
Q Consensus 160 vGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~ 239 (478)
T Consensus 179 vGKS~Ll~~i~r~---~~adv~Vi~lIGERgrEv~efi~~~l------------~~~~~~~svvV~atsd~~p~~r~~a~ 243 (451)
T PRK05688 179 VGKSVLLGMMTRF---TEADIIVVGLIGERGREVKEFIEHIL------------GEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CCHHHHHHHHHHH---HCCCEEEEEEEEEEHHHHHHHHHHHH------------HCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 8689999999885---27986999961277599999999985------------15674305898338889879999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEE
Q ss_conf 7787768999866996799971559998760124553114410110122356665788876317776--53256665430
Q gi|254780615|r 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK--GSITSVQAIYV 317 (478)
Q Consensus 240 ~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~--GSIT~~~tV~~ 317 (478)
T Consensus 244 ~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~g~GSITal~tVlv 323 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLS 323 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEC
T ss_conf 87655899998679825999705577788888899875899876687844887737888641379999922016467750
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
T Consensus 324 ~gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm-~~i~~~~h~~~a~~~r~~la~Y~e~~dLi~~g~ 402 (451)
T PRK05688 324 EGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM-PQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGA 402 (451)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3887677733445655062599848788669999828752665423-333129999999999999998688899999858
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 556998-899999999999998349971100005789736159999999999976
Q gi|254780615|r 398 MDELSE-EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 398 ~~~l~~-~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
T Consensus 403 y~~g~d~~~d~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~a 447 (451)
T PRK05688 403 YVAGGDPETDLAIARQPHLVQFLRQGLR----------ENVSLAESREQLAALFA 447 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 4569999999999869999998189999----------99599999999999847