HHsearch alignment for GI: 254780615 and conserved domain: PRK06936
>PRK06936 type III secretion system ATPase; Provisional.
Probab=100.00 E-value=0 Score=973.35 Aligned_cols=421 Identities=28% Similarity=0.435 Sum_probs=399.5
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r 4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
T Consensus 18 ~~~~~~~Grv~~v~G~~iea~~~~~~iG~~c~i~~~~~~~~~~aEVVgf~-~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~ 96 (439)
T PRK06936 18 SRLIQIRGRVTQVTGTILKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFA-QHQALLTPLGEMYGISSNTEVSPTGTMHQ 96 (439)
T ss_pred CCEEEEEEEEEEEEEEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEEEE-CCEEEEEECCCCCCCCCCCEEEECCCCCE
T ss_conf 98577887999999658999847999788689982899834899999883-89899996778667899999997899867
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 88592376558878752301678753001100234544410000134200023110023557021541003675666624
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
T Consensus 97 vpvG~~lLGRV~D~~G~PlDg~~~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~llt~g~GQR~gIfagsGvGKs 176 (439)
T PRK06936 97 VGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS 176 (439)
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHCCCEEECCCCCCCCHH
T ss_conf 77570422888888887558999998787620458897842026878742268555524686310570102369999889
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r 164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 (478)
Q Consensus 164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ 243 (478)
T Consensus 177 ~Ll~~i~r~---~~adv~V~alIGERgrEv~efie~~l------------~~~gl~rsvvV~atsd~p~~~R~~aa~~a~ 241 (439)
T PRK06936 177 TLLASLIRS---AEVDVTVLALIGERGREVREFIESDL------------GEEGLRKAVLVVATSDRPSMERAKAGFVAT 241 (439)
T ss_pred HHHHHHHHH---HCCCCEEEEEECCCHHHHHHHHHHHH------------HCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999764---32695799980730899999999864------------125431069996189899899999998877
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 76899986699679997155999876012455311441011012235666578887631777653256665430476644
Q gi|254780615|r 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLT 323 (478)
Q Consensus 244 tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~ 323 (478)
T Consensus 242 aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~gepP~~~GYppsvf~~l~~l~ERag~~~~GSITa~~tVl~~gdD~~ 321 (439)
T PRK06936 242 SIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVEGDDMT 321 (439)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCC
T ss_conf 88999985898489993567899999989998668999876779509988788887255899974576544550488777
Q ss_pred CHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 10589999750342564115663188675322355431116201289999999999999998998999999736556998
Q gi|254780615|r 324 DPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE 403 (478)
Q Consensus 324 dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~ 403 (478)
T Consensus 322 dPi~d~~~silDGhivLsR~la~~g~yPAIDvl~S~SRvm~-~v~~~~h~~~a~~~r~~la~y~e~edli~iG~y~~G~d 400 (439)
T PRK06936 322 EPVADETRSILDGHIILSRKLAAANHYPAIDVLASASRVMN-QIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQD 400 (439)
T ss_pred CCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77156566662606998487886699998187404544452-12269999999999999998999999998548657999
Q ss_pred -HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf -899999999999998349971100005789736159999999999976
Q gi|254780615|r 404 -EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 404 -~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
T Consensus 401 ~~~D~ai~~~~~i~~FL~Q~~~e~~----------~~~et~~~L~~l~~ 439 (439)
T PRK06936 401 KEADQAIERIGAIRGFLRQGTHELS----------HFNETLNLLETLTQ 439 (439)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC----------CHHHHHHHHHHHHC
T ss_conf 8899999868999998089999984----------99999999999749