HHsearch alignment for GI: 254780615 and conserved domain: PRK08472
>PRK08472 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=943.00 Aligned_cols=418 Identities=28% Similarity=0.436 Sum_probs=395.8
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEE
Q ss_conf 65341389999557899981666523141899816995599999987089879999814878887888889779848988
Q gi|254780615|r 6 KTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVP 85 (478)
Q Consensus 6 ~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~Vp 85 (478)
T Consensus 16 ~s~~yG~V~~V~G~li~v~G~~~~iGe~~~I~~~~~g~~~~geVvg~-~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~vp 94 (435)
T PRK08472 16 LSPRFGSITKISANIIEARGLKPSVGDIVKIVEENDGKECLGMVVVI-EKEQFGISPFSFIEGFKIGDKVFISDEGLNIP 94 (435)
T ss_pred CCCCCCEEEEEECEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCCEEE
T ss_conf 66778689999573999994588767879999769996778999988-59989999836887899999999899973787
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
Q ss_conf 59237655887875230167875300110023454441000013420002311002355702154100367566662489
Q gi|254780615|r 86 VGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVL 165 (478)
Q Consensus 86 VG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l 165 (478)
T Consensus 95 vg~~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigrGQR~gIf~g~GvGKt~L 174 (435)
T PRK08472 95 VGRNLLGRVVDPLGRPIDGKGAIDYTEYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL 174 (435)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 58340278877788645899998876230114789880451688874115855774326624776651235899983357
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999988505788526876216434599999985424420012223444332316999717668967877777778776
Q gi|254780615|r 166 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 (478)
Q Consensus 166 ~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ti 245 (478)
T Consensus 175 l~~i~~~---~~~dv~V~~lIGeR~rEv~efie~~~-------------~~~l~~tvvvvatsd~p~~~r~~a~~~a~ai 238 (435)
T PRK08472 175 MGMIVKG---CLAPIKVVALIGERGREIPEFIEKNL-------------GGDLSNTVIVVATSDDSPLMRKYGAFCAMSV 238 (435)
T ss_pred HHHHHHH---HCCCEEEEEEECEEHHHHHHHHHHHH-------------HHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8888776---15998899761312278999999874-------------1132225999846889989998888899999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCCCC
Q ss_conf 899986699679997155999876012455311441011012235666578887631777-6532566654304766441
Q gi|254780615|r 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL-KGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 246 AEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~~d 324 (478)
T Consensus 239 AEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~~~~GSIT~i~~v~~~gdD~~~ 318 (435)
T PRK08472 239 AEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSD 318 (435)
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 99998679848998436278899999999865899975563835776657888864258898514888778504887677
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 0589999750342564115663188675322355431116201289999999999999998998999999736556998-
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE- 403 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~- 403 (478)
T Consensus 319 pi~d~~~si~DG~ivLsr~La~~g~yPAIdvl~S~SR~~~-~~~~~~h~~~a~~~r~~~a~y~e~e~li~ig~y~~g~d~ 397 (435)
T PRK08472 319 PIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMK-DIISPEHNLWARKFKRLYSLLKENEVLIRIGAYQKGSDK 397 (435)
T ss_pred CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 7455554540607999787986699998486314544140-013699999999999999998989999996486579998
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 899999999999998349971100005789736159999999999976
Q gi|254780615|r 404 EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 404 ~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
T Consensus 398 ~~d~ai~~~~~i~~fL~Q~~~----------e~~~~eet~~~l~~ils 435 (435)
T PRK08472 398 ELDEAISKKELMEQFLKQNEN----------ELFPFEQSFELLEEILT 435 (435)
T ss_pred HHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 999999847999997799999----------99799999999999739