HHsearch alignment for GI: 254780615 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=97.75 E-value=0.0018 Score=41.58 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=93.6
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 02154100367566662489999999885057885268762164345999999854244200122234443323169997
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLY 225 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~ 225 (478)
T Consensus 21 ip~gs~~li~G~~GtGKsi~~~~~~~~~l~~-g~~~~yis~e~t~~---~~i~qm~s~g~di~--~~~~~G~l~~i~~-~ 93 (230)
T PRK08533 21 IPFGSIILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSSQLTTT---EFIKQMMSLGYDIN--KKLISGKLLYIPV-Y 93 (230)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCHH---HHHHHHHHCCCCCH--HHHHCCCEEEEEC-C
T ss_conf 8898489998689987899999999999878-98699999438999---99999998699817--9975796799961-3
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 17668967877777778776899986699679997155999876012455311441011012235666578887631777
Q gi|254780615|r 226 GQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305 (478)
Q Consensus 226 ~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~ 305 (478)
T Consensus 94 ~~~~~~---~~~~~~L~-~ll~~~~~~~~dv-IIIDSlS~l~~~~--------------~~~~~~~~~~-~~lk~l~s~g 153 (230)
T PRK08533 94 PLLSGN---SEKRDFLD-KLMNTRRFYEKDV-VIIDSLSSLVSRD--------------ASEVQIRDLM-AFFKRISSLN 153 (230)
T ss_pred CCCCCH---HHHHHHHH-HHHHHHHHCCCCE-EEEECCHHHHHCC--------------CCHHHHHHHH-HHHHHHHHCC
T ss_conf 433540---45789999-9973266437989-9990531885167--------------7789999999-9999998589
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 65325666543047664410589999750342564115663
Q gi|254780615|r 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISE 346 (478)
Q Consensus 306 ~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~ 346 (478)
T Consensus 154 k---tIilTv~--p~~~~e~~l~~lrs~aDv~i~L~~~~vG 189 (230)
T PRK08533 154 K---VIILTAN--PKELPESVLLILRTASTILIRLEVKVFG 189 (230)
T ss_pred C---EEEEEEC--CCCCCHHHHHHHHEEEEEEEEEEEEECC
T ss_conf 8---8999956--3313624544204104899998736109