HHsearch alignment for GI: 254780615 and conserved domain: PRK08927
>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=960.10 Aligned_cols=424 Identities=26% Similarity=0.415 Sum_probs=394.1
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEEC-CCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 6456534138999955789998166652314189981-699559999998708987999981487888788888977984
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETS-DKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~-~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
T Consensus 11 ~~~~~~~~GrV~~V~G~~vev~g~~~~~~iG~~c~I~~~~g~~i~aEVvgf~-~~~~~l~~~~~t~Gi~~G~~V~~tg~~ 89 (441)
T PRK08927 11 DIDGVNIYGRVVGVRGLLVEVAGPIHAMSVGARIVVETGDGREIPCEVIGFR-GDRALLMPFGPLEGVRRGCRAVIANAA 89 (441)
T ss_pred CCCCEEEEEEEEEEECEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 4897157789999977089998057777758889999089988999999885-987999988887788999999989999
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCC-CHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 8988592376558878752301678753-001100234544410000134200023110023557021541003675666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAII-SSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~-~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478)
T Consensus 90 ~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQRigIfagsGv 169 (441)
T PRK08927 90 AQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGPPLDLGVRALNTFLTCCRGQRLGIFAGSGV 169 (441)
T ss_pred CEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 87777866428787767111589998888760040247896846617777631036015653300203646663168999
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 62489999999885057885268762164345999999854244200122234443323169997176689678777777
Q gi|254780615|r 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 (478)
Q Consensus 161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~ 240 (478)
T Consensus 170 GKs~Ll~~i~r~---~~adv~VialIGeRgrEv~efi~~~l------------~~~~l~rsvvV~atsd~p~~~R~~a~~ 234 (441)
T PRK08927 170 GKSVLLSMLARN---TDADVSVIGLIGERGREVQEFLQDDL------------GPEGLARSVVVVATSDEPALMRRQAAY 234 (441)
T ss_pred CHHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHHHH------------CCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 878999999864---16773787522651899999999872------------024522458999637898788799998
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEECC
Q ss_conf 787768999866996799971559998760124553114410110122356665788876317-7765325666543047
Q gi|254780615|r 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT-TLKGSITSVQAIYVPA 319 (478)
Q Consensus 241 ~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~-~~~GSIT~~~tV~~~~ 319 (478)
T Consensus 235 ~A~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~~~~GSIT~~~tVl~~g 314 (441)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGLGEGTITGLFTVLVDG 314 (441)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEEECC
T ss_conf 75589999997799679983460288899999997558999877878617877178887613578995030303576127
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66441058999975034256411566318867532235543111620128999999999999999899899999973655
Q gi|254780615|r 320 DDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMD 399 (478)
Q Consensus 320 dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~ 399 (478)
T Consensus 315 dD~~dPi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~-~~~~~~~h~~~a~~~r~~la~y~e~edli~~G~y~ 393 (441)
T PRK08927 315 DDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTM-PGCNDPAELPLVRRARQLMATYADMEELIRLGAYR 393 (441)
T ss_pred CCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87678724544656364799968798669999808762564424-00027999999999999999888999999973864
Q ss_pred CCCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCC
Q ss_conf 69988-9999999999999834997110000578973615999999999997676
Q gi|254780615|r 400 ELSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGE 453 (478)
Q Consensus 400 ~l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~ 453 (478)
T Consensus 394 ~g~d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~e~~~~L~~~~~g~ 438 (441)
T PRK08927 394 AGSDPEVDEAIRLHPPLEAFLRQGKD----------EATSLAEGYAQLAQILGGP 438 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCC
T ss_conf 79998999999867999998489988----------9989999999999986787