HHsearch alignment for GI: 254780615 and conserved domain: PRK08972
>PRK08972 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=961.51 Aligned_cols=418 Identities=27% Similarity=0.448 Sum_probs=393.8
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 56534138999955789998166652314189981699559999998708987999981487888788888977984898
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV 84 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V 84 (478)
T Consensus 19 ~~~~~sGrv~~v~G~~ie~~g~~~~iG~~c~i~~~--~g~~~aEVvgf-~~~~~~l~p~~~~~Gi~~G~~V~~tg~~~~V 95 (440)
T PRK08972 19 FRAVASGQLVRVVGLTLEATGCRAPVGSLCSIETM--AGELEAEVVGF-DGDLLYLMPIEELRGVLPGARVTPLGEQSGL 95 (440)
T ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEECC--CCCEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCEE
T ss_conf 89866048999982589998168987887899849--98289999998-2997999988888888999999978998678
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHH
Q ss_conf 85923765588787523016787530011002345444100001342000231100235570215410036756666248
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTV 164 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~ 164 (478)
T Consensus 96 pVG~~lLGRVvD~lG~PiDg~g~~~~~~~~~i~~~~~~pl~R~~i~epl~TGIkaID~l~pigrGQRigIf~gsGvGKS~ 175 (440)
T PRK08972 96 PVGMSLLGRVLDGNGNPLDGLGPIYTDQRAPRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSV 175 (440)
T ss_pred ECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHH
T ss_conf 84813118875788663589999999852131379978210377786101583456343671246466631578975899
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999998850578852687621643459999998542442001222344433231699971766896787777777877
Q gi|254780615|r 165 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244 (478)
Q Consensus 165 l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~t 244 (478)
T Consensus 176 Ll~~i~r~---~~advvVi~lIGERgrEv~efie~~l------------~~~~~~rsvvV~atsd~~p~~R~~a~~~A~t 240 (440)
T PRK08972 176 LLGMMTRG---TTADVIVVGLVGERGREVKEFIEEIL------------GEEGRARSVVVAAPADTSPLMRLKGCETATR 240 (440)
T ss_pred HHHHHHHC---CCCCEEEEEEECEEHHHHHHHHHHHH------------CCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99888751---47878999862313699999999985------------0477447899970488886889999999998
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCC
Q ss_conf 68999866996799971559998760124553114410110122356665788876317--7765325666543047664
Q gi|254780615|r 245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT--TLKGSITSVQAIYVPADDL 322 (478)
Q Consensus 245 iAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~--~~~GSIT~~~tV~~~~dD~ 322 (478)
T Consensus 241 iAEyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~~~GSITa~~tVlv~gdD~ 320 (440)
T PRK08972 241 IAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDL 320 (440)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC
T ss_conf 89999967997799963556777888789987489987667764277773688875226899976588856663158866
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
T Consensus 321 ~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRvm-~~i~~~~h~~~a~~~r~~la~y~e~~dli~~g~y~~g~ 399 (440)
T PRK08972 321 QDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYAQGS 399 (440)
T ss_pred CCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78724544655350799848798669998758750665527-41068999999999999999888899999975966899
Q ss_pred HHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 889-9999999999998349971100005789736159999999999976
Q gi|254780615|r 403 EED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 403 ~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
T Consensus 400 d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~~ 439 (440)
T PRK08972 400 DPRIDNAIRLQPAMNAFLQQTMK----------EAVPYDDSVNMLKQLAA 439 (440)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 98999999868999998389999----------99799999999999863