HHsearch alignment for GI: 254780615 and conserved domain: PRK08972

>PRK08972 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=961.51  Aligned_cols=418  Identities=27%  Similarity=0.448  Sum_probs=393.8

Q ss_pred             CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf             56534138999955789998166652314189981699559999998708987999981487888788888977984898
Q gi|254780615|r    5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV   84 (478)
Q Consensus         5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V   84 (478)
T Consensus        19 ~~~~~sGrv~~v~G~~ie~~g~~~~iG~~c~i~~~--~g~~~aEVvgf-~~~~~~l~p~~~~~Gi~~G~~V~~tg~~~~V   95 (440)
T PRK08972         19 FRAVASGQLVRVVGLTLEATGCRAPVGSLCSIETM--AGELEAEVVGF-DGDLLYLMPIEELRGVLPGARVTPLGEQSGL   95 (440)
T ss_pred             CCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEECC--CCCEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCEE
T ss_conf             89866048999982589998168987887899849--98289999998-2997999988888888999999978998678


Q ss_pred             ECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHH
Q ss_conf             85923765588787523016787530011002345444100001342000231100235570215410036756666248
Q gi|254780615|r   85 PVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTV  164 (478)
Q Consensus        85 pVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~  164 (478)
T Consensus        96 pVG~~lLGRVvD~lG~PiDg~g~~~~~~~~~i~~~~~~pl~R~~i~epl~TGIkaID~l~pigrGQRigIf~gsGvGKS~  175 (440)
T PRK08972         96 PVGMSLLGRVLDGNGNPLDGLGPIYTDQRAPRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSV  175 (440)
T ss_pred             ECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHH
T ss_conf             84813118875788663589999999852131379978210377786101583456343671246466631578975899


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99999998850578852687621643459999998542442001222344433231699971766896787777777877
Q gi|254780615|r  165 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT  244 (478)
Q Consensus       165 l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~t  244 (478)
T Consensus       176 Ll~~i~r~---~~advvVi~lIGERgrEv~efie~~l------------~~~~~~rsvvV~atsd~~p~~R~~a~~~A~t  240 (440)
T PRK08972        176 LLGMMTRG---TTADVIVVGLVGERGREVKEFIEEIL------------GEEGRARSVVVAAPADTSPLMRLKGCETATR  240 (440)
T ss_pred             HHHHHHHC---CCCCEEEEEEECEEHHHHHHHHHHHH------------CCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             99888751---47878999862313699999999985------------0477447899970488886889999999998


Q ss_pred             HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCC
Q ss_conf             68999866996799971559998760124553114410110122356665788876317--7765325666543047664
Q gi|254780615|r  245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT--TLKGSITSVQAIYVPADDL  322 (478)
Q Consensus       245 iAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~--~~~GSIT~~~tV~~~~dD~  322 (478)
T Consensus       241 iAEyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~~~GSITa~~tVlv~gdD~  320 (440)
T PRK08972        241 IAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDL  320 (440)
T ss_pred             HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC
T ss_conf             89999967997799963556777888789987489987667764277773688875226899976588856663158866


Q ss_pred             CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r  323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS  402 (478)
Q Consensus       323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~  402 (478)
T Consensus       321 ~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRvm-~~i~~~~h~~~a~~~r~~la~y~e~~dli~~g~y~~g~  399 (440)
T PRK08972        321 QDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYAQGS  399 (440)
T ss_pred             CCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             78724544655350799848798669998758750665527-41068999999999999999888899999975966899


Q ss_pred             HHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf             889-9999999999998349971100005789736159999999999976
Q gi|254780615|r  403 EED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ  451 (478)
Q Consensus       403 ~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~  451 (478)
T Consensus       400 d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~~  439 (440)
T PRK08972        400 DPRIDNAIRLQPAMNAFLQQTMK----------EAVPYDDSVNMLKQLAA  439 (440)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf             98999999868999998389999----------99799999999999863