HHsearch alignment for GI: 254780615 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=98.41  E-value=1.1e-05  Score=56.31  Aligned_cols=70  Identities=29%  Similarity=0.348  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf             20002311002355--70215410036756666248999999988505788526876216434599999985
Q gi|254780615|r  131 SILTTGIKVIDLIS--PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM  200 (478)
Q Consensus       131 e~L~TGIkaID~l~--pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~  200 (478)
T Consensus         4 eRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~   75 (501)
T PRK09302          4 EKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASF   75 (501)
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf             421448711577854898899779998389999999999999999885599789998579999999999984