HHsearch alignment for GI: 254780615 and conserved domain: PRK09376
>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=100.00 E-value=5.8e-42 Score=294.29 Aligned_cols=292 Identities=22% Similarity=0.287 Sum_probs=217.9
Q ss_pred CCCCCCCCEEEECCCEEEEECCHH--HHHHHHHHHHHHCCCCCCCCCHHHHCCC--CCCCCCHHHCCC---CCCCCCCCC
Q ss_conf 788878888897798489885923--7655887875230167875300110023--454441000013---420002311
Q gi|254780615|r 66 TDGLSRGDCVIDTGTQITVPVGEA--TLGRIMNVIGEPVDDQGAIISSEKRAIH--QPSPSYTEQSTD---ASILTTGIK 138 (478)
Q Consensus 66 t~GI~~G~~V~~tg~~l~VpVG~~--lLGRViD~lG~PLDg~g~i~~~~~~pi~--~~~p~~~~R~~i---~e~L~TGIk 138 (478)
T Consensus 89 rf~LR~GD~V~G~vR~pke--~Ery~aLl~V~~VNg~~pe------~~~~r~~F~~LTPi~P~erl~LE~~~~~~s~--R 158 (416)
T PRK09376 89 RFNLRTGDTVEGKIRPPKE--GERYFALLKVETVNGEDPE------KARNRILFENLTPLYPNERLKLETGTEDLST--R 158 (416)
T ss_pred HHCCCCCCEEEEEEECCCC--CCCCCCEEEEEECCCCCHH------HHCCCCCCCCCCCCCCHHHHCCCCCCCCCCC--C
T ss_conf 8099888889998868988--8877433776322893989------9657354014877797223114568876540--0
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0023557021541003675666624899999998850578852687-621643459999998542442001222344433
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAV 217 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~ 217 (478)
T Consensus 159 iiDL~aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDERPEEVTdm~r~v----------------- 221 (416)
T PRK09376 159 VIDLVAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSV----------------- 221 (416)
T ss_pred CEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHC-----------------
T ss_conf 211005413585003756998754799999999998569971999999048934777877504-----------------
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCH-----HHHCCHHHHH
Q ss_conf 23169997176689678777777787768999866996799971559998760124553114410-----1101223566
Q gi|254780615|r 218 GSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPS-----AVGYQSTLAL 292 (478)
Q Consensus 218 ~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~-----~~gYp~~~f~ 292 (478)
T Consensus 222 --~~eV~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~lsGG~D~~Al~~PKrfF 299 (416)
T PRK09376 222 --KGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFF 299 (416)
T ss_pred --CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHH
T ss_conf --618999779998789999999999999999876997899973157888886234699877544765777760556764
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEECCC-CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHH
Q ss_conf 6578887631777653256665430476-644105899997503425641156631886753223554311162012899
Q gi|254780615|r 293 EMGELQERITTTLKGSITSVQAIYVPAD-DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQE 371 (478)
Q Consensus 293 ~~~~l~ERag~~~~GSIT~~~tV~~~~d-D~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~ 371 (478)
T Consensus 300 GAARnie-----~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ldr~la~~RifPAIdi~~SgTRk-EelLl~~~ 373 (416)
T PRK09376 300 GAARNIE-----EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRK-EELLLSPE 373 (416)
T ss_pred HHHCCCC-----CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCH-HHHCCCHH
T ss_conf 1002677-----67517787777752686253899998515784599987667757886401333577725-76537999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999989989999
Q gi|254780615|r 372 HYDVARRVQEILQRYKSLQDI 392 (478)
Q Consensus 372 h~~~a~~~r~~l~~y~el~~~ 392 (478)
T Consensus 374 e~~~~~~lRr~l~~~~~~ea~ 394 (416)
T PRK09376 374 ELQKVWILRKILSPMDEVEAM 394 (416)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999987159979999