HHsearch alignment for GI: 254780615 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=97.26  E-value=0.0016  Score=42.01  Aligned_cols=81  Identities=23%  Similarity=0.406  Sum_probs=49.6

Q ss_pred             CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             02154100367566662489999999885057885268762164345999999854244200122234443323169997
Q gi|254780615|r  146 YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLY  225 (478)
Q Consensus       146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~  225 (478)
T Consensus        49 ~~~~~S~Il~GPPGtGKTTLA~iIA~~-t~--~~F~~lsAv~sgvkdlr~ii~~--------------------------   99 (726)
T PRK13341         49 ADRVGSLILYGPPGVGKTTLARIIANH-TR--AHFSSLNAVLAGVKDLRAEVDA--------------------------   99 (726)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHH-HC--CCEEEEECCCCCHHHHHHHHHH--------------------------
T ss_conf             699982788897999999999999887-48--8679985620377999999999--------------------------


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf             1766896787777777877689998-6699679997155999876012455
Q gi|254780615|r  226 GQMNEPPGARSRVALTGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISA  275 (478)
Q Consensus       226 ~~~~~~~~~r~~~~~~a~tiAEyfr-d~g~dVll~~Dsltr~a~A~rEisl  275 (478)
T Consensus       100 --------------------A~~~~~~~g~~tILFIDEIHRfNK~QQD~LL  130 (726)
T PRK13341        100 --------------------AKERLERHGKRTILFIDEVHRFNKAQQDALL  130 (726)
T ss_pred             --------------------HHHHHHHCCCCEEEEEECHHHCCHHHHHHHH
T ss_conf             --------------------9999874599659998625425887899878