HHsearch alignment for GI: 254780615 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=97.26 E-value=0.0016 Score=42.01 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=49.6
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 02154100367566662489999999885057885268762164345999999854244200122234443323169997
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLY 225 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~ 225 (478)
T Consensus 49 ~~~~~S~Il~GPPGtGKTTLA~iIA~~-t~--~~F~~lsAv~sgvkdlr~ii~~-------------------------- 99 (726)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANH-TR--AHFSSLNAVLAGVKDLRAEVDA-------------------------- 99 (726)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-HC--CCEEEEECCCCCHHHHHHHHHH--------------------------
T ss_conf 699982788897999999999999887-48--8679985620377999999999--------------------------
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 1766896787777777877689998-6699679997155999876012455
Q gi|254780615|r 226 GQMNEPPGARSRVALTGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISA 275 (478)
Q Consensus 226 ~~~~~~~~~r~~~~~~a~tiAEyfr-d~g~dVll~~Dsltr~a~A~rEisl 275 (478)
T Consensus 100 --------------------A~~~~~~~g~~tILFIDEIHRfNK~QQD~LL 130 (726)
T PRK13341 100 --------------------AKERLERHGKRTILFIDEVHRFNKAQQDALL 130 (726)
T ss_pred --------------------HHHHHHHCCCCEEEEEECHHHCCHHHHHHHH
T ss_conf --------------------9999874599659998625425887899878