HHsearch alignment for GI: 254780615 and conserved domain: PRK13891
>PRK13891 conjugal transfer protein TrbE; Provisional.
Probab=90.40 E-value=0.34 Score=26.68 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 54100367566662489999999885057885268762164345
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 192 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rE 192 (478)
T Consensus 488 vGHTlIiGpTGaGKTvll~fL~aQ~~rY-~~~~vf~F--DK~~S 528 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHLGIIAAQLRRY-AGMSIYAF--DKGMS 528 (852)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEE--CCCCC
T ss_conf 6640787899998899999999997441-89818987--89852