HHsearch alignment for GI: 254780615 and conserved domain: TIGR00750
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=92.87 E-value=0.13 Score=29.54 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEECHHHHHHHHH
Q ss_conf 9999999999999998998-99999973655699889999999999999-834997110000578973615999999999
Q gi|254780615|r 370 QEHYDVARRVQEILQRYKS-LQDIIAILGMDELSEEDKLVVARARKLER-FMSQPFHVAESFTGLPGKFVSLEETIRGFK 447 (478)
Q Consensus 370 ~~h~~~a~~~r~~l~~y~e-l~~~i~~~g~~~l~~~~~~~i~r~~~i~~-fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~ 447 (478)
T Consensus 195 ~~a~~v~~~a~~~l~l~~esvqmlsqm------thadearvq~G~~~~r~~gW~Ppv~~tsA~~G~G-i~EL~daI~eH~ 267 (333)
T TIGR00750 195 EGAEEVKTLARLMLALDLESVQMLSQM------THADEARVQKGEIYRREKGWRPPVLKTSAVEGRG-IDELWDAIEEHK 267 (333)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHH
T ss_conf 665899999999888888899999865------3333444302655110105899638873356887-167899999999
Q ss_pred HHH--CCCC
Q ss_conf 997--6764
Q gi|254780615|r 448 GLV--QGEY 454 (478)
Q Consensus 448 ~il--~g~~ 454 (478)
T Consensus 268 ~~l~~~G~~ 276 (333)
T TIGR00750 268 KFLTESGLL 276 (333)
T ss_pred HHHHHCCCH
T ss_conf 999863606