HHsearch alignment for GI: 254780615 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.98 E-value=0.057 Score=31.81 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 13420002311002355702154100367566662489999999
Q gi|254780615|r 128 TDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 128 ~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
T Consensus 340 ivPk~~l~gi-----~F~~~aGe~laIIGPSgSGKStLaR~~vG 378 (556)
T TIGR01842 340 IVPKPTLRGI-----SFAIQAGEALAIIGPSGSGKSTLARILVG 378 (556)
T ss_pred CCCHHHHCCC-----CEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 7761422786-----21563774588874786525889878872