HHsearch alignment for GI: 254780615 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.51 E-value=0.0097 Score=36.86 Aligned_cols=217 Identities=19% Similarity=0.175 Sum_probs=122.9
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC--EECCCCCCCCHHHHHHHHHHHHHHCC-----------CC----C
Q ss_conf 4544410000134200023110023557021541--00367566662489999999885057-----------88----5
Q gi|254780615|r 118 QPSPSYTEQSTDASILTTGIKVIDLISPYQKGGK--IGLFGGAGVGKTVLIMELINNVAKAH-----------GG----Y 180 (478)
Q Consensus 118 ~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr--~gIfgg~GvGKT~l~~~~i~n~~~~~-----------~~----v 180 (478)
T Consensus 63 ~~a~~vl~rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~ 142 (333)
T TIGR02236 63 ETADDVLERRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPK 142 (333)
T ss_pred HHHHHHHHHHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCE
T ss_conf 14899999872075044486367656079600005888771007865787667655322871121011000147767876
Q ss_pred EEEEEE-----CCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 268762-----164345999-99985424420012223444332316999717668967877777778776899986699
Q gi|254780615|r 181 SVFAGV-----GERTREGND-LYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQ 254 (478)
Q Consensus 181 ~V~~~i-----GER~rEv~e-~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~ 254 (478)
T Consensus 143 av~IDTEnTFRPERI~qmA~GL~~g-----~l~~~melD~~evL~nI~vARAyNS---~HQmllve~~~~li~e~~~~~~ 214 (333)
T TIGR02236 143 AVYIDTENTFRPERIEQMAKGLARG-----TLQAAMELDPDEVLKNIYVARAYNS---NHQMLLVEKAKELIKELKNEDK 214 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----HHHHHHCCCHHHHHCCEEEEEEECC---HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8998559798625799999863111-----3666532787777203047785263---1479999999999973015799
Q ss_pred CE-EEEEECHHHHHHHHHHHHHHHCCCCHHHHC---CHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC------CCCCC
Q ss_conf 67-999715599987601245531144101101---223566657888763177765325666543047------66441
Q gi|254780615|r 255 DV-LFFVDNIFRFTQANSEISALLGRIPSAVGY---QSTLALEMGELQERITTTLKGSITSVQAIYVPA------DDLTD 324 (478)
Q Consensus 255 dV-ll~~Dsltr~a~A~rEisl~~g~~P~~~gY---p~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~------dD~~d 324 (478)
T Consensus 215 pv~L~~VDSLtsHFRa---------EY~GRg~LA~RQQKLnk-Hlh~L~~ladlyn--~aV~VTNQV~A~PDaFFG~Pt~ 282 (333)
T TIGR02236 215 PVRLLIVDSLTSHFRA---------EYVGRGNLAERQQKLNK-HLHDLLRLADLYN--AAVVVTNQVMARPDAFFGDPTK 282 (333)
T ss_pred CEEEEEECCCCCCCCC---------CCCCHHHHHHHHHHHHH-HHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCC
T ss_conf 4689998121002236---------76450247889869878-8998865414021--7899855612278734486987
Q ss_pred HHHHHHHHHCCCE-EEEEHHHHHCCCCCCCC
Q ss_conf 0589999750342-56411566318867532
Q gi|254780615|r 325 PAPATSFTHLDAT-TVLSRQISEKGIYPAID 354 (478)
Q Consensus 325 pi~~~~~si~Dg~-ivLsr~la~~g~~PAId 354 (478)
T Consensus 283 piGGhilgH~AT~R~yLrKsk~~kRiarl~D 313 (333)
T TIGR02236 283 PIGGHILGHAATFRLYLRKSKGDKRIARLVD 313 (333)
T ss_pred CCCCEEECCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 7677154127856899996479814899873