HHsearch alignment for GI: 254780615 and conserved domain: TIGR02546

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00  E-value=0  Score=1103.17  Aligned_cols=419  Identities=29%  Similarity=0.472  Sum_probs=398.3

Q ss_pred             CCCCCEEEEEEECCEEEEEECCCCCCCCCEEEE--CCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf             653413899995578999816665231418998--169955999999870898799998148788878888897798489
Q gi|254780615|r    6 KTESVGRIQQIMGAVVDVVFVNSLPPIFSSLET--SDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT   83 (478)
Q Consensus         6 ~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~--~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~   83 (478)
T Consensus         2 ~~~~~Grv~~v~G~Ll~A~lP~a~vGELC~i~~nW~~~~~~~~AEVVGf~~-~~alLsPlg~~~G~~~g~~V~p~g~~~~   80 (430)
T TIGR02546         2 LVRVRGRVTEVSGTLLKAVLPGARVGELCLIKRNWPRDPSQLLAEVVGFTG-DEALLSPLGELSGISPGSEVIPTGRPLS   80 (430)
T ss_pred             CCEEEEEEEEECCEEEEEECCCEEEEEEEEEECCCCCCCCCCEEEEEEEEC-CEEEEECCCCCCCCCCCCEEEECCCCEE
T ss_conf             831476677521338999817606740345522378985661378998727-8677602665332565667862584202


Q ss_pred             EECCHHHHHHHHHHHHHHCCCCCCCCCHH-------HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf             88592376558878752301678753001-------10023454441000013420002311002355702154100367
Q gi|254780615|r   84 VPVGEATLGRIMNVIGEPVDDQGAIISSE-------KRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFG  156 (478)
Q Consensus        84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~-------~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfg  156 (478)
T Consensus        81 i~vGe~LLGRVlDG~GrPlD~~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIFA  160 (430)
T TIGR02546        81 IRVGEALLGRVLDGFGRPLDGKGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFA  160 (430)
T ss_pred             EEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             21060003200456577037888787556430246457656781048767533465101466754344036653057870


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf             56666248999999988505788526876216434599999985424420012223444332316999717668967877
Q gi|254780615|r  157 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARS  236 (478)
Q Consensus       157 g~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~  236 (478)
T Consensus       161 ~aG~GKSTLL~~i~~g---~~ADv~V~ALIGERGREVREFiE~------------~lg~e~~~RsVlVvsTSDrss~eR~  225 (430)
T TIGR02546       161 GAGVGKSTLLGMIARG---ASADVNVIALIGERGREVREFIEH------------LLGEEGRKRSVLVVSTSDRSSLERL  225 (430)
T ss_pred             CCCCCHHHHHHHHHCC---CCCCEEEEEECCCCCHHHHHHHHH------------CCCHHHCCCEEEEEECCCCCHHHHH
T ss_conf             8886166899998618---988789986027876047888752------------0783052424899607986679999


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             77777877689998669967999715599987601245531144101101223566657888763177765325666543
Q gi|254780615|r  237 RVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIY  316 (478)
Q Consensus       237 ~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~  316 (478)
T Consensus       226 ~AAy~ATaIAEYFRDQGk~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~~e~GSITA~YTVL  305 (430)
T TIGR02546       226 KAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGNSEKGSITALYTVL  305 (430)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCEEEEEEEE
T ss_conf             99878879999999739907988402779999987788753784002577873665075012278611296253456787


Q ss_pred             ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             04766441058999975034256411566318867532235543111620128999999999999999899899999973
Q gi|254780615|r  317 VPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAIL  396 (478)
Q Consensus       317 ~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~  396 (478)
T Consensus       306 vEgDd~~dP~ADEvRSILDGHIvLsR~LA~~~HyPAIDVLaS~SRvm~-~vv~~eH~~aA~~lR~LLA~Y~e~e~LI~lG  384 (430)
T TIGR02546       306 VEGDDMNDPIADEVRSILDGHIVLSRKLAERNHYPAIDVLASLSRVMS-QVVSKEHRRAAGKLRRLLAKYKEVELLIRLG  384 (430)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             627779984366554454236899899974168863566523664236-7788789999999999999999998898744


Q ss_pred             CCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf             65569988-99999999999998349971100005789736159999999999976
Q gi|254780615|r  397 GMDELSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ  451 (478)
Q Consensus       397 g~~~l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~  451 (478)
T Consensus       385 EY~~G~D~~~D~A~~~~~~i~~FL~Q~~~E~~----------~~e~tl~~L~~~~~  430 (430)
T TIGR02546       385 EYQPGSDPETDKAIDKIDAIRAFLRQSTDEKS----------SYEETLEQLHALVA  430 (430)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC----------CHHHHHHHHHHHHC
T ss_conf             88899898899999757788987148887778----------98999999999819