HHsearch alignment for GI: 254780615 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00 E-value=0 Score=1103.17 Aligned_cols=419 Identities=29% Similarity=0.472 Sum_probs=398.3
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCCEEEE--CCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 653413899995578999816665231418998--169955999999870898799998148788878888897798489
Q gi|254780615|r 6 KTESVGRIQQIMGAVVDVVFVNSLPPIFSSLET--SDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 6 ~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~--~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
T Consensus 2 ~~~~~Grv~~v~G~Ll~A~lP~a~vGELC~i~~nW~~~~~~~~AEVVGf~~-~~alLsPlg~~~G~~~g~~V~p~g~~~~ 80 (430)
T TIGR02546 2 LVRVRGRVTEVSGTLLKAVLPGARVGELCLIKRNWPRDPSQLLAEVVGFTG-DEALLSPLGELSGISPGSEVIPTGRPLS 80 (430)
T ss_pred CCEEEEEEEEECCEEEEEECCCEEEEEEEEEECCCCCCCCCCEEEEEEEEC-CEEEEECCCCCCCCCCCCEEEECCCCEE
T ss_conf 831476677521338999817606740345522378985661378998727-8677602665332565667862584202
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHH-------HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 88592376558878752301678753001-------10023454441000013420002311002355702154100367
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSE-------KRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFG 156 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~-------~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfg 156 (478)
T Consensus 81 i~vGe~LLGRVlDG~GrPlD~~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIFA 160 (430)
T TIGR02546 81 IRVGEALLGRVLDGFGRPLDGKGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFA 160 (430)
T ss_pred EEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 21060003200456577037888787556430246457656781048767533465101466754344036653057870
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 56666248999999988505788526876216434599999985424420012223444332316999717668967877
Q gi|254780615|r 157 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARS 236 (478)
Q Consensus 157 g~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~ 236 (478)
T Consensus 161 ~aG~GKSTLL~~i~~g---~~ADv~V~ALIGERGREVREFiE~------------~lg~e~~~RsVlVvsTSDrss~eR~ 225 (430)
T TIGR02546 161 GAGVGKSTLLGMIARG---ASADVNVIALIGERGREVREFIEH------------LLGEEGRKRSVLVVSTSDRSSLERL 225 (430)
T ss_pred CCCCCHHHHHHHHHCC---CCCCEEEEEECCCCCHHHHHHHHH------------CCCHHHCCCEEEEEECCCCCHHHHH
T ss_conf 8886166899998618---988789986027876047888752------------0783052424899607986679999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 77777877689998669967999715599987601245531144101101223566657888763177765325666543
Q gi|254780615|r 237 RVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIY 316 (478)
Q Consensus 237 ~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~ 316 (478)
T Consensus 226 ~AAy~ATaIAEYFRDQGk~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~~e~GSITA~YTVL 305 (430)
T TIGR02546 226 KAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGNSEKGSITALYTVL 305 (430)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCEEEEEEEE
T ss_conf 99878879999999739907988402779999987788753784002577873665075012278611296253456787
Q ss_pred ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04766441058999975034256411566318867532235543111620128999999999999999899899999973
Q gi|254780615|r 317 VPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAIL 396 (478)
Q Consensus 317 ~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~ 396 (478)
T Consensus 306 vEgDd~~dP~ADEvRSILDGHIvLsR~LA~~~HyPAIDVLaS~SRvm~-~vv~~eH~~aA~~lR~LLA~Y~e~e~LI~lG 384 (430)
T TIGR02546 306 VEGDDMNDPIADEVRSILDGHIVLSRKLAERNHYPAIDVLASLSRVMS-QVVSKEHRRAAGKLRRLLAKYKEVELLIRLG 384 (430)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 627779984366554454236899899974168863566523664236-7788789999999999999999998898744
Q ss_pred CCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 65569988-99999999999998349971100005789736159999999999976
Q gi|254780615|r 397 GMDELSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 397 g~~~l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
T Consensus 385 EY~~G~D~~~D~A~~~~~~i~~FL~Q~~~E~~----------~~e~tl~~L~~~~~ 430 (430)
T TIGR02546 385 EYQPGSDPETDKAIDKIDAIRAFLRQSTDEKS----------SYEETLEQLHALVA 430 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC----------CHHHHHHHHHHHHC
T ss_conf 88899898899999757788987148887778----------98999999999819