HHsearch alignment for GI: 254780615 and conserved domain: TIGR02746
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=92.58 E-value=0.19 Score=28.32 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=84.3
Q ss_pred CCCCCCCCCCC---CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 11002355702---1541003675666624899999998850578852687-6216434599999985424420012223
Q gi|254780615|r 137 IKVIDLISPYQ---KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKN 212 (478)
Q Consensus 137 IkaID~l~pig---~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~ 212 (478)
T Consensus 474 l~~~d~F~~~~~~i~NYN~~~~g~sG~GKSf~~Q~~~~~~-L~~G-~kv~viDvG~---Sy~KLC~~lgG~Yie~----- 543 (900)
T TIGR02746 474 LSAFDPFDSDLLNITNYNIAVVGGSGAGKSFFMQELIVSV-LSRG-GKVWVIDVGR---SYKKLCEMLGGTYIEF----- 543 (900)
T ss_pred EEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCC-CEEEEEEECC---CHHHHHHHHCCCEECC-----
T ss_conf 8778303378667677148997288987168798999998-5179-8489996078---8488876518712104-----
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH--HHHH--HHHHHHCCCCEEEEE----ECHHHHHHHHHHHHHHHCCCC---
Q ss_conf 44433231699971766896787777777--8776--899986699679997----155999876012455311441---
Q gi|254780615|r 213 NGSAVGSKCSLLYGQMNEPPGARSRVALT--GLTV--AEHFRDQGQDVLFFV----DNIFRFTQANSEISALLGRIP--- 281 (478)
Q Consensus 213 ~~~~~~~~tv~v~~~~~~~~~~r~~~~~~--a~ti--AEyfrd~g~dVll~~----Dsltr~a~A~rEisl~~g~~P--- 281 (478)
T Consensus 544 -----~~e~~i~LN------------PFTHL~i~~A~~~~~~~~~~~v~~i~Geqv~~~~~i~-------~~ia~MAGlD 599 (900)
T TIGR02746 544 -----SPESTICLN------------PFTHLDIEEARFDIIDFDGNNVTEIDGEQVDEIDQIT-------ALIALMAGLD 599 (900)
T ss_pred -----CCCCCCCCC------------CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH-------HHHHHHHCCC
T ss_conf -----667763238------------7444660003332267363467756740288999999-------9999884466
Q ss_pred -HHHHCCHHHHHHHH------HHHHHHC------CCCCCCEEEEEEEEECC-----CCCCC---HHHHHHHHHCC
Q ss_conf -01101223566657------8887631------77765325666543047-----66441---05899997503
Q gi|254780615|r 282 -SAVGYQSTLALEMG------ELQERIT------TTLKGSITSVQAIYVPA-----DDLTD---PAPATSFTHLD 335 (478)
Q Consensus 282 -~~~gYp~~~f~~~~------~l~ERag------~~~~GSIT~~~tV~~~~-----dD~~d---pi~~~~~si~D 335 (478)
T Consensus 600 l~P~~---~l~~~q~lmaryCs~l~~AI~~~W~~~g~~a~~tdV~~~L~~~~~e~~~~~~DGir~r~~~l~~~L~ 671 (900)
T TIGR02746 600 LSPEG---GLSDEQELMARYCSLLEEAILAAWKEKGNEATITDVADALEQLRLEEEDSENDGIRPRIKDLGKLLN 671 (900)
T ss_pred CCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 68455---6788889999999999999999999712248848999999852133134568860168999998732