HHsearch alignment for GI: 254780615 and conserved domain: TIGR03324
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=923.47 Aligned_cols=428 Identities=23% Similarity=0.371 Sum_probs=402.0
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
T Consensus 20 ~~~~~~~e~G~v~~vgdgia~v~Gl~~~--~~~el~~f~~~---~~g~~~nle~~~vg~v~lg~~~~i~~G~~V~~TG~~ 94 (497)
T TIGR03324 20 QPQLTVQEVGTVESVSTGIARVHGLPGV--GFEELLRFPGG---LLGIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRV 94 (497)
T ss_pred CCCCEEEEEEEEEEECCCEEEEECCCCC--CCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCC
T ss_conf 8875246667999974856999785010--44863880899---889999637883799995698776899999858982
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
T Consensus 95 l~VPVG~~lLGRVvd~LG~PiDGkgpi~~~~~~pie~~aP~i~~R~~V~epL~TGIkaID~liPIGrGQRelIigdrgtG 174 (497)
T TIGR03324 95 MDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTG 174 (497)
T ss_pred EEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 28744888717645888556789999887641024578989634788887100241455424655677467764588888
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
T Consensus 175 KTtla~dtIin-qk~~~vicVyvaIGqr~seV~~~v~~l~~------------~gal~~TvVV~Ata~dpa~lr~~Apya 241 (497)
T TIGR03324 175 KTAIAIDTILN-QKGRNVLCIYCAIGQRASAVAKVVANLRE------------HGAMDYTIVVVTEGNDPPGLQYIAPYA 241 (497)
T ss_pred HHHHHHHHHHH-CCCCCEEEEEEEEEEEHHHHHHHHHHHHH------------CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 00889999970-45667189999732507879999999874------------875234179995688998999887899
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
T Consensus 242 a~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFylhsrLLERA~~l~~~~ggGSiTalpivet 321 (497)
T TIGR03324 242 ATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIET 321 (497)
T ss_pred HHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
T ss_conf 99999999968974899997806999999999986489998778893598770788873247789999977232479980
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
T Consensus 322 ~~~D~sayIptnvisItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~-~aq~~~~k~vag~lrl~laq~~El~~f~qfgs 400 (497)
T TIGR03324 322 EAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGG-KAQLAAYRAVAGDLKLAYAQFEELETFARFGA 400 (497)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCEECCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 28865664454222010867997240765799764356877313672-43058999874456999998999999987624
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 556998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r 398 MDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL 460 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~ 460 (478)
T Consensus 401 --~ld~~t~~~l~rG~r~~e~lkQ~~~----------~p~~~~~qv~~l~a~~~g~ld~~~~~ 451 (497)
T TIGR03324 401 --RLDENTRKTIEHGRRIRACLKQTQS----------SPLTVPQQIAILLALTNGLFDGVDLD 451 (497)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf --4489999999887999998667778----------99699999999999853986668889