HHsearch alignment for GI: 254780615 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.49  E-value=0.29  Score=27.13  Aligned_cols=156  Identities=20%  Similarity=0.314  Sum_probs=75.8

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             003675666624899999998850578-----852687621643459999998542442001222344433231699971
Q gi|254780615|r  152 IGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG  226 (478)
Q Consensus       152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~-----~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~  226 (478)
T Consensus       197 piLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~---------------------------------LDlg~LvAG  243 (852)
T TIGR03346       197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA---------------------------------LDMGALIAG  243 (852)
T ss_pred             CCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEE---------------------------------EEHHHHHCC
T ss_conf             72127999879999999999986699997885185127---------------------------------528877521


Q ss_pred             CCCCCH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHH-----HH------HHHCCCCHHHHCCHHHHHHH
Q ss_conf             766896-7877777778776899986699679997155999876012-----45------53114410110122356665
Q gi|254780615|r  227 QMNEPP-GARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSE-----IS------ALLGRIPSAVGYQSTLALEM  294 (478)
Q Consensus       227 ~~~~~~-~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rE-----is------l~~g~~P~~~gYp~~~f~~~  294 (478)
T Consensus       244 tkyRGeFEeRlk~------ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgA---TT~~EY  314 (852)
T TIGR03346       244 AKYRGEFEERLKA------VLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGA---TTLDEY  314 (852)
T ss_pred             CCCCHHHHHHHHH------HHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE---CCHHHH
T ss_conf             5300789999999------9999985899879996125553268876664106777437874798559982---789999


Q ss_pred             HHHHHHHCCCCCCCEE-EEEEEEECCCCCCCHHHHHHHHHCCCEE--------------------EEEHHHHHCCCCC--
Q ss_conf             7888763177765325-6665430476644105899997503425--------------------6411566318867--
Q gi|254780615|r  295 GELQERITTTLKGSIT-SVQAIYVPADDLTDPAPATSFTHLDATT--------------------VLSRQISEKGIYP--  351 (478)
Q Consensus       295 ~~l~ERag~~~~GSIT-~~~tV~~~~dD~~dpi~~~~~si~Dg~i--------------------vLsr~la~~g~~P--  351 (478)
T Consensus       315 rk~iEk-----D~AL~RRFq~I~V-----~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPDK  384 (852)
T TIGR03346       315 RKYIEK-----DAALERRFQPVFV-----DEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK  384 (852)
T ss_pred             HHHHHC-----CHHHHHHCCCCCC-----CCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf             988322-----6889973771204-----799868999999976999976279267399999999971346677889618


Q ss_pred             CCCCCCCC
Q ss_conf             53223554
Q gi|254780615|r  352 AIDPLDSN  359 (478)
Q Consensus       352 AId~~~S~  359 (478)
T Consensus       385 AIDlLDeA  392 (852)
T TIGR03346       385 AIDLIDEA  392 (852)
T ss_pred             HHHHHHHH
T ss_conf             99999999