HHsearch alignment for GI: 254780615 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.96 E-value=2.4e-28 Score=204.91 Aligned_cols=161 Identities=32% Similarity=0.458 Sum_probs=146.4
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10036756666248999999988505788526876216434599999985424420012223444332316999717668
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~~~q~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 67 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGES------------LKGALDNLIIVFATADD 67 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHH------------CCCCCCEEEEEECCCCC
T ss_conf 9899989999899999999999876-3997999986664489999999862------------24671307999359997
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 96787777777877689998669967999715599987601245531144101101223566657888763177765325
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT 310 (478)
T Consensus 68 ~~~~~~~------~~~~~~~~~~~~vliiiDSit~~~~a~~e~---------~~g~~~~v~~~~~~L~~~Ak---~~~it 129 (165)
T cd01120 68 PAAARLL------SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR---KGGVT 129 (165)
T ss_pred CHHHHHH------HHHHHHHHCCCCEEEEEECHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHH---CCCCE
T ss_conf 6999999------999999986997799992889988774001---------58867899999999999997---79828
Q ss_pred EEEEEEECCCCCCCH----HHHHHHHHCCCEEEEEH
Q ss_conf 666543047664410----58999975034256411
Q gi|254780615|r 311 SVQAIYVPADDLTDP----APATSFTHLDATTVLSR 342 (478)
Q Consensus 311 ~~~tV~~~~dD~~dp----i~~~~~si~Dg~ivLsr 342 (478)
T Consensus 130 vi~i~~v~~d~~~~~~~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 130 VIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCEEEEEEC
T ss_conf 999998433778997725388888364266999839