HHsearch alignment for GI: 254780615 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.61 E-value=0.015 Score=35.57 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 200023110023557--021541003675666624899999998850578852687621643459999998542442001
Q gi|254780615|r 131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208 (478)
Q Consensus 131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~ 208 (478)
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~-~~vLY-vSGEES~~QIk~RA---------- 129 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLY-VSGEESPEQIKLRA---------- 129 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEE-EECHHHHHHHHHHH----------
T ss_conf 5444783666540057730671799825998868899999999998639-93899-82456789999899----------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 2223444332316999717668967877777778776899986699679997155999
Q gi|254780615|r 209 PRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRF 266 (478)
Q Consensus 209 ~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~ 266 (478)
T Consensus 130 -~R---Lg~~~~~l~l~set~le------------~Il~~i-~~~kP~~lIIDSIQT~ 170 (372)
T cd01121 130 -DR---LGISTENLYLLAETNLE------------DILASI-EELKPDLVIIDSIQTV 170 (372)
T ss_pred -HH---HCCCCCCCEEEECCCHH------------HHHHHH-HHHCCCEEEEECHHHC
T ss_conf -98---58788772788435699------------999999-9719988999562202