>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

Probab=100.00 E-value=0 Score=721.59 Aligned_cols=273 Identities=77% Similarity=1.177 Sum_probs=266.7 Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC Q ss_conf 48988592376558878752301678753001100234544410000134200023110023557021541003675666 Q gi|254780615|r 81 QITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478) Q Consensus 81 ~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478) T Consensus 1 Pl~ipVg~~lLGRVvd~~G~PiDg~~~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIr~ID~l~pigkGQR~~I~~~~g~ 80 (274) T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274) T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCC T ss_conf 96577680421656368965248999999986042568996845607878731158666644466147857787579999 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 62489999999885057885268762164345999999854244200122234443323169997176689678777777 Q gi|254780615|r 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 (478) Q Consensus 161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~ 240 (478) T Consensus 81 GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~------------~~~l~~tvvv~~tad~~~~~r~~~~~ 148 (274) T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKE------------SGVLSKTALVYGQMNEPPGARARVAL 148 (274) T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCC------------CCCCCEEEEEEECCCCCHHHHHHHHH T ss_conf 823689999999985089879999842554889999997203------------56653379998345554057899999 Q ss_pred HHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC Q ss_conf 78776899986-69967999715599987601245531144101101223566657888763177765325666543047 Q gi|254780615|r 241 TGLTVAEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPA 319 (478) Q Consensus 241 ~a~tiAEyfrd-~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~ 319 (478) T Consensus 149 ~a~aiAE~frd~~G~dVLll~DslTr~A~A~reis~~~g~~P~~~gyp~~l~~~~~~l~ER~~~~~~GSiT~i~tv~~~~ 228 (274) T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPA 228 (274) T ss_pred HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCC T ss_conf 99999999997289859999718689999999888862899986666830788999999974488898746888997458 Q ss_pred CCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 6644105899997503425641156631886753223554311162 Q gi|254780615|r 320 DDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365 (478) Q Consensus 320 dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~ 365 (478) T Consensus 229 dD~~dpi~~~~~~i~dG~ivLsr~la~~g~yPAIdv~~S~SR~m~p 274 (274) T cd01133 229 DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILDP 274 (274) T ss_pred CCCCCCHHHHHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 8876617788877407299985889967999963776531012588

HHsearch alignment for GI: 254780615 and conserved domain: cd01133