HHsearch alignment for GI: 254780615 and conserved domain: cd01136
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=0 Score=821.14 Aligned_cols=325 Identities=33% Similarity=0.546 Sum_probs=314.4
Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 48988592376558878752301678753001100234544410000134200023110023557021541003675666
Q gi|254780615|r 81 QITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478)
Q Consensus 81 ~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478)
T Consensus 1 Pl~vpVg~~lLGRVid~~G~PiDg~~~i~~~~~~pi~~~ap~~~~R~~v~e~l~TGI~~ID~l~pigrGQR~~Ifg~~g~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCC
T ss_conf 96535576651747678834157999999986152568995803307888751157704200266247987874369999
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 62489999999885057885268762164345999999854244200122234443323169997176689678777777
Q gi|254780615|r 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 (478)
Q Consensus 161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~ 240 (478)
T Consensus 81 GKt~Ll~~i~~~---~~~~v~V~~~IGer~rev~e~~~~~~------------~~~~l~~tvvv~atad~~~~~r~~a~~ 145 (326)
T cd01136 81 GKSTLLGMIARG---TTADVNVIALIGERGREVREFIEKDL------------GEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred CCCHHHHHHHHC---CCCCEEEEEEECCCHHHHHHHHHHHH------------CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 846678768641---46775999960533889999999862------------456532228996068899899999888
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC
Q ss_conf 78776899986699679997155999876012455311441011012235666578887631777653256665430476
Q gi|254780615|r 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPAD 320 (478)
Q Consensus 241 ~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~d 320 (478)
T Consensus 146 ~a~~~AEyfrd~G~dVL~~~Dsltr~A~A~rEisl~~g~~P~~~gyp~~~f~~~~~l~ERag~~~~GSIT~i~~v~~~~d 225 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGD 225 (326)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf 77777889997587337875246899999999888648998756677668888789888641799985244457870598
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 64410589999750342564115663188675322355431116201289999999999999998998999999736556
Q gi|254780615|r 321 DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDE 400 (478)
Q Consensus 321 D~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~ 400 (478)
T Consensus 226 d~tdpi~~~~~~i~Dg~ivLsr~La~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~ 304 (326)
T cd01136 226 DLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLM-NAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKK 304 (326)
T ss_pred CCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8788627889875473899858899679999748862753366-000679999999999999998999999998549767
Q ss_pred CCH-HHHHHHHHHHHHHHHHCC
Q ss_conf 998-899999999999998349
Q gi|254780615|r 401 LSE-EDKLVVARARKLERFMSQ 421 (478)
Q Consensus 401 l~~-~~~~~i~r~~~i~~fL~Q 421 (478)
T Consensus 305 g~d~~~d~~i~~~~~i~~fL~Q 326 (326)
T cd01136 305 GSDPEVDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9898999999989999998586