HHsearch alignment for GI: 254780615 and conserved domain: cd03222

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.55  E-value=0.0096  Score=36.89  Aligned_cols=141  Identities=18%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             10023557021541003675666624899999998850578852687621643459999998542442001222344433
Q gi|254780615|r  138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAV  217 (478)
Q Consensus       138 kaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~  217 (478)
T Consensus        14 ~~l~~~~~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i-~~~--g~~---------------~~~----------   65 (177)
T cd03222          14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWD--GIT---------------PVY----------   65 (177)
T ss_pred             EEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE-EEC--CCC---------------EEC----------
T ss_conf             9865899558998999989999999999999968867889946-666--861---------------221----------


Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHH
Q ss_conf             23169997176689678777777787768999866996799971559998760124553114410110122356665788
Q gi|254780615|r  218 GSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGEL  297 (478)
Q Consensus       218 ~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l  297 (478)
T Consensus        66 ~p------q~~~LSGGqrQRv~iAra-l~-----~~p~ll-lLD-----------------EPts~--LD~~~r~~i~~~  113 (177)
T cd03222          66 KP------QYIDLSGGELQRVAIAAA-LL-----RNATFY-LFD-----------------EPSAY--LDIEQRLNAARA  113 (177)
T ss_pred             CC------CCCCCCHHHHHHHHHHHH-HH-----CCCCEE-EEC-----------------CCCCC--CCHHHHHHHHHH
T ss_conf             55------515079899999999999-82-----399999-974-----------------88653--899999999999


Q ss_pred             HHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCC
Q ss_conf             8763177765325666543047664410589999750342564115663188
Q gi|254780615|r  298 QERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGI  349 (478)
Q Consensus       298 ~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~  349 (478)
T Consensus       114 ik~l~~--~~~~Tvl~v----sHdl-----~~a~~~aDrI~vl~g~~~~~g~  154 (177)
T cd03222         114 IRRLSE--EGKKTALVV----EHDL-----AVLDYLSDRIHVFEGEPGVYGI  154 (177)
T ss_pred             HHHHHH--HCCCEEEEE----CCCH-----HHHHHHCCEEEEEECCCCEEEE
T ss_conf             999999--659779998----5889-----9999869999999389826988