HHsearch alignment for GI: 254780615 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.23 E-value=0.0085 Score=37.21 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
T Consensus 19 ~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~G 49 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 4588988999999995899988999999869