HHsearch alignment for GI: 254780615 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.68 E-value=0.016 Score=35.48 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=27.9
Q ss_pred CCCCCCCCC------CCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 311002355------70215410036756666248999999988
Q gi|254780615|r 136 GIKVIDLIS------PYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 136 GIkaID~l~------pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
T Consensus 6 ~~k~l~~~sL~i~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll 49 (246)
T cd03237 6 MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEECCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 81761506898568846579899999799976999999997787