HHsearch alignment for GI: 254780615 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.90 E-value=0.014 Score=35.90 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 23557021541003675666624899999998850578852
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
T Consensus 22 ~isl~i~~Ge~~~iiG~sGsGKTTll~~i~G-l~~p~~G~I 61 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRPTSGEV 61 (218)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEE
T ss_conf 6289986998999999999869999999966-999996499