HHsearch alignment for GI: 254780615 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.69 E-value=0.052 Score=32.07 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 557021541003675666624899999998850578852687
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
T Consensus 20 s~~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g 60 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 (211)
T ss_pred EEEECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 4688897-5999999982399999999759668962999999