HHsearch alignment for GI: 254780615 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.35 E-value=0.038 Score=32.92 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
T Consensus 13 ~Vsl~i~~Ge~~aIvG~nGsGKSTL~~~~l~ 43 (226)
T cd03270 13 NVDVDIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 7489985998999987899609898361663