HHsearch alignment for GI: 254780615 and conserved domain: cd03295
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.006 Score=38.23 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 11002-355702154100367566662489999999
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
T Consensus 14 ~~al~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~g 49 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 889830276886998999999999569999999975