HHsearch alignment for GI: 254780615 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.72 E-value=0.017 Score=35.20 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=27.2
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 1100-2355702154100367566662489999999
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
T Consensus 13 ~~~l~~isl~v~~Ge~~~i~GpSG~GKSTlLr~iaG 48 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999876177986998999999998809999999976