HHsearch alignment for GI: 254780615 and conserved domain: cd04150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=90.97 E-value=0.47 Score=25.78 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=48.8
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10036756666248999999988505788526876216434599999985424420012223444332316999717668
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
T Consensus 2 KililG~~~sGKTsll~~l~~~----~-~~~~~pT~g~~~-------~------------~~~~---~~~~l~iw---D~ 51 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG----E-IVTTIPTIGFNV-------E------------TVEY---KNISFTVW---DV 51 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHCC----C-CCCCCCCCCCCE-------E------------EEEE---CCEEEEEE---EC
T ss_conf 9999999999989999999729----9-677589687017-------9------------9998---98999999---78
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECH--HHHHHHHHHHHHHHCCCC
Q ss_conf 967877777778776899986699679997155--999876012455311441
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNI--FRFTQANSEISALLGRIP 281 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsl--tr~a~A~rEisl~~g~~P 281 (478)
T Consensus 52 ~G~~~~r~-----l~~~Y~~~-a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~ 98 (159)
T cd04150 52 GGQDKIRP-----LWRHYFQN-TQGLIFVVDSNDRERIGEAREELQRMLNEDE 98 (159)
T ss_pred CCCCCCCH-----HHHHHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCHH
T ss_conf 99721465-----67864768-7389999977777899999999999962353