Query gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 478
No_of_seqs 267 out of 2947
Neff 5.9
Searched_HMMs 39220
Date Sun May 29 23:51:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780615.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09280 F0F1 ATP synthase sub 100.0 0 0 1156.5 46.5 460 7-478 2-463 (466)
2 CHL00060 atpB ATP synthase CF1 100.0 0 0 1146.8 45.3 471 3-478 3-480 (480)
3 PRK12597 F0F1 ATP synthase sub 100.0 0 0 1128.5 44.5 456 9-477 2-458 (459)
4 TIGR03305 alt_F1F0_F1_bet alte 100.0 0 0 1123.9 41.2 448 11-471 1-449 (449)
5 TIGR02546 III_secr_ATP type II 100.0 0 0 1103.2 31.3 419 6-451 2-430 (430)
6 TIGR02545 ATP_syn_fliI flagell 100.0 0 0 1091.3 34.6 418 7-451 1-439 (439)
7 TIGR01026 fliI_yscN ATPase Fli 100.0 0 0 1069.1 28.9 420 5-450 19-454 (455)
8 COG0055 AtpD F0F1-type ATP syn 100.0 0 0 1046.3 35.8 458 9-478 2-465 (468)
9 TIGR00962 atpA ATP synthase F1 100.0 0 0 1002.1 22.4 427 2-458 19-467 (520)
10 PRK06936 type III secretion sy 100.0 0 0 973.4 39.4 421 4-451 18-439 (439)
11 PRK05688 fliI flagellum-specif 100.0 0 0 970.9 39.8 423 2-451 20-447 (451)
12 PRK07721 fliI flagellum-specif 100.0 0 0 965.8 41.8 424 3-453 10-435 (435)
13 PRK08972 fliI flagellum-specif 100.0 0 0 961.5 40.1 418 5-451 19-439 (440)
14 COG1157 FliI Flagellar biosynt 100.0 0 0 963.2 38.5 420 5-451 20-440 (441)
15 PRK08927 fliI flagellum-specif 100.0 0 0 960.1 39.5 424 3-453 11-438 (441)
16 PRK06315 type III secretion sy 100.0 0 0 958.9 40.1 422 3-451 17-442 (442)
17 PRK09099 type III secretion sy 100.0 0 0 951.1 38.7 423 2-451 17-440 (441)
18 PRK08149 ATP synthase SpaL; Va 100.0 0 0 947.1 39.7 418 7-451 4-427 (427)
19 PRK13343 F0F1 ATP synthase sub 100.0 0 0 952.9 34.2 446 2-468 20-478 (502)
20 PRK07594 type III secretion sy 100.0 0 0 945.3 40.1 415 5-451 17-432 (433)
21 TIGR03496 FliI_clade1 flagella 100.0 0 0 947.2 38.4 407 11-445 1-410 (411)
22 TIGR03498 FliI_clade3 flagella 100.0 0 0 943.3 40.4 412 11-450 1-418 (418)
23 PRK07960 fliI flagellum-specif 100.0 0 0 944.2 39.5 422 2-450 20-453 (455)
24 PRK08472 fliI flagellum-specif 100.0 0 0 943.0 40.0 418 6-451 16-435 (435)
25 TIGR03497 FliI_clade2 flagella 100.0 0 0 941.0 39.7 411 11-449 1-412 (413)
26 KOG1350 consensus 100.0 0 0 957.6 26.7 466 7-478 49-515 (521)
27 PRK06820 type III secretion sy 100.0 0 0 938.0 38.7 419 5-450 25-444 (445)
28 PRK07196 fliI flagellum-specif 100.0 0 0 933.0 40.4 419 4-450 12-432 (434)
29 PRK06793 fliI flagellum-specif 100.0 0 0 930.8 38.9 416 3-450 15-432 (432)
30 CHL00059 atpA ATP synthase CF1 100.0 0 0 927.0 39.9 428 2-460 21-452 (501)
31 TIGR03324 alt_F1F0_F1_al alter 100.0 0 0 923.5 39.8 428 2-460 20-451 (497)
32 PRK09281 F0F1 ATP synthase sub 100.0 0 0 922.5 39.7 428 2-460 20-451 (502)
33 PRK05922 type III secretion sy 100.0 0 0 919.9 38.2 420 4-453 14-434 (434)
34 PRK06002 fliI flagellum-specif 100.0 0 0 917.6 39.4 422 4-455 21-446 (450)
35 PRK04196 V-type ATP synthase s 100.0 0 0 902.2 42.1 431 8-466 2-445 (460)
36 PRK02118 V-type ATP synthase s 100.0 0 0 823.2 40.6 420 7-474 2-428 (432)
37 PRK07165 F0F1 ATP synthase sub 100.0 0 0 817.4 33.1 429 11-470 3-439 (507)
38 cd01136 ATPase_flagellum-secre 100.0 0 0 821.1 27.5 325 81-421 1-326 (326)
39 COG0056 AtpA F0F1-type ATP syn 100.0 0 0 813.3 31.4 427 3-460 21-451 (504)
40 TIGR01039 atpD ATP synthase F1 100.0 0 0 811.3 25.2 458 9-478 1-460 (460)
41 PRK04192 V-type ATP synthase s 100.0 0 0 755.7 37.2 425 8-451 2-527 (585)
42 cd01135 V_A-ATPase_B V/A-type 100.0 0 0 740.3 21.0 270 81-362 1-276 (276)
43 cd01133 F1-ATPase_beta F1 ATP 100.0 0 0 721.6 21.8 273 81-365 1-274 (274)
44 cd01132 F1_ATPase_alpha F1 ATP 100.0 0 0 707.3 20.2 268 82-362 2-273 (274)
45 PTZ00185 ATPase alpha subunit; 100.0 0 0 700.7 22.7 419 7-458 37-479 (574)
46 cd01134 V_A-ATPase_A V/A-type 100.0 0 0 643.6 19.2 269 85-362 84-369 (369)
47 TIGR01043 ATP_syn_A_arch ATP s 100.0 0 0 607.4 27.0 424 9-451 1-527 (584)
48 COG1156 NtpB Archaeal/vacuolar 100.0 0 0 565.7 30.2 431 6-466 3-448 (463)
49 COG1155 NtpA Archaeal/vacuolar 100.0 0 0 566.0 29.2 423 9-450 1-525 (588)
50 cd01128 rho_factor Transcripti 100.0 0 0 559.4 22.8 241 134-395 1-244 (249)
51 pfam00006 ATP-synt_ab ATP synt 100.0 0 0 544.1 20.2 212 135-360 1-213 (213)
52 KOG1352 consensus 100.0 0 0 533.0 19.0 429 5-450 16-547 (618)
53 TIGR01041 ATP_syn_B_arch ATP s 100.0 0 0 479.1 27.4 429 10-466 2-443 (458)
54 KOG1351 consensus 100.0 0 0 474.7 25.5 427 9-460 23-476 (489)
55 TIGR01042 V-ATPase_V1_A V-type 100.0 0 0 467.9 23.4 427 9-451 1-531 (596)
56 TIGR01040 V-ATPase_V1_B V-type 100.0 0 0 435.5 23.9 417 10-451 2-438 (464)
57 KOG1353 consensus 100.0 0 0 375.6 12.4 317 2-445 13-336 (340)
58 PRK12608 transcription termina 100.0 0 0 349.6 22.1 295 65-391 54-356 (379)
59 PRK09376 rho transcription ter 100.0 5.8E-42 0 294.3 15.1 292 66-392 89-394 (416)
60 PRK12678 transcription termina 100.0 2.6E-38 6.7E-43 270.3 16.0 245 120-392 381-636 (667)
61 COG1158 Rho Transcription term 100.0 2.3E-37 5.9E-42 264.1 17.5 240 125-390 151-396 (422)
62 cd01120 RecA-like_NTPases RecA 100.0 2.4E-28 6.2E-33 204.9 16.8 161 151-342 1-165 (165)
63 TIGR00767 rho transcription te 99.9 1.3E-20 3.4E-25 154.1 13.5 241 131-392 155-398 (420)
64 pfam00306 ATP-synt_ab_C ATP sy 99.8 8.7E-20 2.2E-24 148.7 11.8 97 373-472 1-97 (110)
65 pfam06745 KaiC KaiC. This fami 98.7 1.9E-07 4.7E-12 67.8 10.8 198 133-357 1-204 (231)
66 PRK06067 flagellar accessory p 98.7 5.8E-07 1.5E-11 64.6 12.3 201 127-358 8-210 (241)
67 PRK09302 circadian clock prote 98.7 7.4E-07 1.9E-11 63.9 12.7 203 125-361 240-446 (501)
68 pfam02874 ATP-synt_ab_N ATP sy 98.6 1.7E-07 4.3E-12 68.1 7.3 67 13-79 1-69 (69)
69 PRK04328 hypothetical protein; 98.5 1.5E-06 3.7E-11 61.9 10.6 195 131-357 4-212 (250)
70 COG0467 RAD55 RecA-superfamily 98.5 2.5E-06 6.4E-11 60.4 11.7 197 131-356 3-208 (260)
71 PRK09302 circadian clock prote 98.4 1.1E-05 2.7E-10 56.3 12.4 70 131-200 4-75 (501)
72 PRK09361 radB DNA repair and r 98.3 1.4E-05 3.6E-10 55.5 11.5 118 129-269 1-122 (224)
73 cd01394 radB RadB. The archaea 98.3 4.1E-05 1E-09 52.4 13.5 179 133-343 1-187 (218)
74 smart00382 AAA ATPases associa 98.3 6.3E-06 1.6E-10 57.8 9.2 146 148-342 1-146 (148)
75 cd01124 KaiC KaiC is a circadi 98.1 8.5E-05 2.2E-09 50.4 10.8 166 152-346 2-168 (187)
76 cd01123 Rad51_DMC1_radA Rad51_ 97.9 8.9E-05 2.3E-09 50.2 8.1 120 133-269 1-130 (235)
77 PRK08533 flagellar accessory p 97.7 0.0018 4.7E-08 41.6 13.0 169 146-346 21-189 (230)
78 pfam00154 RecA recA bacterial 97.7 0.00013 3.3E-09 49.2 6.3 111 130-267 30-143 (322)
79 cd00983 recA RecA is a bacter 97.5 0.00024 6.1E-09 47.4 5.9 110 131-267 34-146 (325)
80 cd01393 recA_like RecA is a b 97.4 0.00094 2.4E-08 43.5 8.1 120 133-267 1-127 (226)
81 PRK13341 recombination factor 97.3 0.0016 4.1E-08 42.0 7.5 81 146-275 49-130 (726)
82 PRK09354 recA recombinase A; P 97.2 0.0014 3.6E-08 42.4 6.7 109 131-266 39-150 (350)
83 PRK00149 dnaA chromosomal repl 97.2 0.0012 3.2E-08 42.7 6.2 44 152-201 148-191 (447)
84 PRK12422 chromosomal replicati 97.0 0.005 1.3E-07 38.7 7.9 105 152-310 144-266 (455)
85 COG0468 RecA RecA/RadA recombi 97.0 0.0093 2.4E-07 37.0 9.0 174 127-337 36-221 (279)
86 pfam00931 NB-ARC NB-ARC domain 96.9 0.004 1E-07 39.4 6.8 90 151-265 21-111 (285)
87 PRK13631 cbiO cobalt transport 96.9 0.0093 2.4E-07 37.0 8.5 36 137-172 39-75 (320)
88 pfam08423 Rad51 Rad51. Rad51 i 96.9 0.0047 1.2E-07 38.9 6.8 133 120-269 12-153 (261)
89 PRK13342 recombination factor 96.8 0.0048 1.2E-07 38.9 6.7 83 143-275 31-113 (417)
90 PRK04301 radA DNA repair and r 96.8 0.0057 1.5E-07 38.3 7.0 133 120-269 72-214 (318)
91 pfam03796 DnaB_C DnaB-like hel 96.7 0.0023 6E-08 40.9 4.3 44 133-176 2-46 (186)
92 PRK08506 replicative DNA helic 96.6 0.0022 5.5E-08 41.1 3.6 53 133-185 176-229 (473)
93 cd01121 Sms Sms (bacterial rad 96.6 0.015 3.9E-07 35.6 7.9 107 131-266 62-170 (372)
94 PRK11823 DNA repair protein Ra 96.6 0.016 4.1E-07 35.4 7.8 106 130-265 69-176 (454)
95 TIGR02858 spore_III_AA stage I 96.6 0.002 5E-08 41.4 3.1 80 128-208 101-185 (282)
96 TIGR02236 recomb_radA DNA repa 96.5 0.0097 2.5E-07 36.9 6.4 217 118-354 63-313 (333)
97 COG2256 MGS1 ATPase related to 96.5 0.013 3.3E-07 36.0 7.0 80 147-275 46-125 (436)
98 PRK06749 replicative DNA helic 96.5 0.0028 7.2E-08 40.4 3.5 52 132-183 168-220 (428)
99 PRK05595 replicative DNA helic 96.4 0.0032 8.2E-08 40.0 3.3 45 132-176 183-228 (444)
100 PRK05748 replicative DNA helic 96.4 0.0031 8E-08 40.1 3.1 59 132-191 185-244 (448)
101 PRK08082 consensus 96.3 0.0038 9.6E-08 39.6 3.5 52 132-183 185-238 (453)
102 TIGR02203 MsbA_lipidA lipid A 96.3 0.0023 5.8E-08 41.0 2.3 80 101-181 339-420 (603)
103 pfam01695 IstB IstB-like ATP b 96.3 0.022 5.7E-07 34.5 7.2 52 143-202 41-92 (178)
104 TIGR03600 phage_DnaB phage rep 96.3 0.0034 8.7E-08 39.8 3.1 44 132-175 176-220 (421)
105 PRK08760 replicative DNA helic 96.3 0.0042 1.1E-07 39.2 3.4 53 132-184 211-265 (476)
106 TIGR02237 recomb_radB DNA repa 96.2 0.023 5.9E-07 34.3 7.1 165 152-342 15-190 (223)
107 cd01122 GP4d_helicase GP4d_hel 96.2 0.092 2.3E-06 30.4 10.0 64 131-194 11-75 (271)
108 PRK08181 transposase; Validate 96.2 0.027 7E-07 33.9 7.2 49 145-202 102-151 (269)
109 PTZ00035 Rad51; Provisional 96.2 0.017 4.4E-07 35.2 6.1 131 119-269 98-240 (350)
110 COG1155 NtpA Archaeal/vacuolar 96.1 0.0094 2.4E-07 36.9 4.6 221 225-451 288-522 (588)
111 COG1066 Sms Predicted ATP-depe 96.1 0.043 1.1E-06 32.6 7.9 57 131-190 73-131 (456)
112 PRK10789 putative multidrug tr 96.1 0.0061 1.6E-07 38.2 3.5 39 142-180 334-372 (569)
113 PRK08006 replicative DNA helic 96.1 0.0056 1.4E-07 38.4 3.3 53 132-184 206-260 (471)
114 pfam05496 RuvB_N Holliday junc 96.1 0.016 4.2E-07 35.3 5.6 21 152-172 53-73 (234)
115 cd03291 ABCC_CFTR1 The CFTR su 96.1 0.005 1.3E-07 38.8 2.9 39 142-180 56-94 (282)
116 PRK07004 replicative DNA helic 96.1 0.0058 1.5E-07 38.3 3.2 59 132-191 195-254 (460)
117 PRK08840 replicative DNA helic 96.0 0.0058 1.5E-07 38.3 3.2 60 132-192 199-259 (464)
118 cd03369 ABCC_NFT1 Domain 2 of 96.0 0.0043 1.1E-07 39.1 2.5 34 141-174 26-59 (207)
119 pfam05729 NACHT NACHT domain. 96.0 0.011 2.8E-07 36.5 4.5 27 150-176 1-27 (165)
120 PRK06526 transposase; Provisio 96.0 0.03 7.6E-07 33.7 6.6 52 141-201 90-142 (254)
121 PRK08694 consensus 96.0 0.0058 1.5E-07 38.3 2.9 58 132-190 200-258 (468)
122 PRK07263 consensus 96.0 0.007 1.8E-07 37.8 3.3 44 132-175 185-229 (453)
123 PRK11176 lipid transporter ATP 95.9 0.0065 1.7E-07 38.0 3.1 36 139-174 357-393 (581)
124 COG1124 DppF ABC-type dipeptid 95.9 0.0038 9.6E-08 39.5 1.8 40 143-183 27-66 (252)
125 TIGR03015 pepcterm_ATPase puta 95.9 0.064 1.6E-06 31.5 8.1 84 151-262 45-131 (269)
126 PRK09165 replicative DNA helic 95.9 0.0081 2.1E-07 37.4 3.4 45 132-176 187-232 (484)
127 PRK06904 replicative DNA helic 95.9 0.0071 1.8E-07 37.8 3.0 46 132-177 203-249 (472)
128 PRK11174 cysteine/glutathione 95.9 0.011 2.7E-07 36.6 3.9 34 138-171 364-398 (588)
129 PRK09519 recA recombinase A; R 95.9 0.028 7E-07 33.9 6.0 53 131-184 39-94 (790)
130 TIGR02782 TrbB_P P-type conjug 95.8 0.013 3.3E-07 36.0 4.3 120 70-193 38-182 (315)
131 PRK05541 adenylylsulfate kinas 95.8 0.076 1.9E-06 31.0 8.2 90 147-269 5-94 (176)
132 cd03247 ABCC_cytochrome_bd The 95.8 0.0052 1.3E-07 38.6 2.1 37 142-178 21-57 (178)
133 PRK05636 replicative DNA helic 95.8 0.0093 2.4E-07 37.0 3.3 44 132-175 249-293 (507)
134 TIGR02868 CydC ABC transporter 95.8 0.008 2E-07 37.4 2.9 99 144-303 382-480 (566)
135 cd03257 ABC_NikE_OppD_transpor 95.7 0.0046 1.2E-07 39.0 1.6 32 141-172 23-54 (228)
136 cd03250 ABCC_MRP_domain1 Domai 95.7 0.0038 9.6E-08 39.5 1.0 33 141-173 23-55 (204)
137 PRK11160 cysteine/glutathione 95.7 0.0058 1.5E-07 38.3 1.9 31 142-172 360-390 (575)
138 cd03251 ABCC_MsbA MsbA is an e 95.7 0.005 1.3E-07 38.7 1.6 34 141-174 20-53 (234)
139 cd00009 AAA The AAA+ (ATPases 95.7 0.052 1.3E-06 32.1 6.8 27 148-174 18-44 (151)
140 PRK09473 oppD oligopeptide tra 95.7 0.0067 1.7E-07 37.9 2.2 55 118-172 7-65 (330)
141 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.7 0.0057 1.5E-07 38.4 1.8 33 141-173 21-53 (238)
142 PRK10636 putative ABC transpor 95.6 0.0038 9.8E-08 39.5 0.9 166 142-326 331-516 (638)
143 PRK06321 replicative DNA helic 95.6 0.011 2.7E-07 36.6 3.2 53 132-184 208-262 (472)
144 cd03289 ABCC_CFTR2 The CFTR su 95.6 0.0076 1.9E-07 37.5 2.4 38 141-179 22-59 (275)
145 cd03228 ABCC_MRP_Like The MRP 95.6 0.0055 1.4E-07 38.5 1.5 30 143-172 22-51 (171)
146 KOG2028 consensus 95.6 0.033 8.3E-07 33.4 5.5 215 151-424 164-428 (554)
147 PRK10790 putative multidrug tr 95.6 0.01 2.6E-07 36.7 2.9 39 141-179 359-397 (593)
148 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.0067 1.7E-07 37.9 1.9 34 138-171 13-46 (211)
149 PRK13657 cyclic beta-1,2-gluca 95.6 0.009 2.3E-07 37.1 2.5 33 141-173 353-385 (585)
150 cd03222 ABC_RNaseL_inhibitor T 95.6 0.0096 2.4E-07 36.9 2.7 141 138-349 14-154 (177)
151 COG1474 CDC6 Cdc6-related prot 95.5 0.072 1.8E-06 31.1 7.1 102 143-269 33-138 (366)
152 PRK00411 cdc6 cell division co 95.5 0.13 3.2E-06 29.5 8.2 108 147-300 53-168 (394)
153 cd03248 ABCC_TAP TAP, the Tran 95.5 0.0068 1.7E-07 37.9 1.7 32 141-172 32-63 (226)
154 COG2874 FlaH Predicted ATPases 95.5 0.2 5E-06 28.3 10.3 162 148-344 27-192 (235)
155 cd03246 ABCC_Protease_Secretio 95.5 0.0067 1.7E-07 37.9 1.6 33 141-173 20-52 (173)
156 PRK11308 dppF dipeptide transp 95.5 0.0056 1.4E-07 38.4 1.2 48 137-185 28-76 (327)
157 PRK11022 dppD dipeptide transp 95.5 0.0076 1.9E-07 37.5 1.8 36 137-172 20-56 (327)
158 cd03290 ABCC_SUR1_N The SUR do 95.4 0.0072 1.8E-07 37.7 1.7 34 141-174 19-52 (218)
159 PRK12289 ribosome-associated G 95.4 0.1 2.6E-06 30.2 7.4 34 139-172 161-194 (351)
160 cd03295 ABC_OpuCA_Osmoprotecti 95.4 0.006 1.5E-07 38.2 1.1 35 137-171 14-49 (242)
161 PRK10522 multidrug transporter 95.4 0.0076 1.9E-07 37.5 1.6 33 141-173 341-373 (547)
162 PRK10771 thiQ thiamine transpo 95.4 0.0065 1.7E-07 38.0 1.2 31 142-172 18-48 (233)
163 cd03253 ABCC_ATM1_transporter 95.3 0.0072 1.8E-07 37.7 1.4 31 141-171 19-49 (236)
164 PRK11147 ABC transporter ATPas 95.3 0.0062 1.6E-07 38.1 1.1 161 141-312 337-519 (632)
165 PRK10636 putative ABC transpor 95.3 0.009 2.3E-07 37.1 1.9 38 134-171 10-49 (638)
166 cd03245 ABCC_bacteriocin_expor 95.3 0.0079 2E-07 37.4 1.5 32 141-172 22-53 (220)
167 PRK13635 cbiO cobalt transport 95.3 0.0088 2.2E-07 37.1 1.7 32 141-172 25-56 (279)
168 PRK10584 putative ABC transpor 95.3 0.0053 1.4E-07 38.6 0.6 47 125-171 8-58 (228)
169 COG4987 CydC ABC-type transpor 95.3 0.012 3E-07 36.3 2.3 37 138-174 352-389 (573)
170 cd03225 ABC_cobalt_CbiO_domain 95.3 0.011 2.7E-07 36.5 2.1 32 141-172 19-50 (211)
171 cd03300 ABC_PotA_N PotA is an 95.2 0.01 2.6E-07 36.7 2.0 35 137-171 13-48 (232)
172 cd03288 ABCC_SUR2 The SUR doma 95.2 0.01 2.6E-07 36.7 2.0 45 141-186 39-83 (257)
173 cd03223 ABCD_peroxisomal_ALDP 95.2 0.0085 2.2E-07 37.2 1.5 31 141-171 19-49 (166)
174 TIGR03345 VI_ClpV1 type VI sec 95.2 0.063 1.6E-06 31.5 6.0 149 152-357 211-404 (852)
175 pfam01637 Arch_ATPase Archaeal 95.2 0.2 5.1E-06 28.2 8.5 103 149-267 20-122 (223)
176 TIGR03265 PhnT2 putative 2-ami 95.2 0.0099 2.5E-07 36.8 1.8 36 136-171 16-52 (353)
177 PRK11831 putative ABC transpor 95.2 0.0085 2.2E-07 37.2 1.5 42 141-183 26-67 (269)
178 cd03226 ABC_cobalt_CbiO_domain 95.2 0.01 2.6E-07 36.7 1.8 36 137-172 13-49 (205)
179 COG1116 TauB ABC-type nitrate/ 95.2 0.011 2.9E-07 36.4 2.1 35 137-171 16-51 (248)
180 PRK13642 cbiO cobalt transport 95.2 0.0081 2.1E-07 37.3 1.4 38 135-172 18-56 (277)
181 cd03244 ABCC_MRP_domain2 Domai 95.2 0.0089 2.3E-07 37.1 1.5 31 142-172 23-53 (221)
182 PRK13637 cbiO cobalt transport 95.2 0.0082 2.1E-07 37.3 1.3 35 138-172 21-56 (287)
183 PRK11147 ABC transporter ATPas 95.2 0.011 2.8E-07 36.5 1.9 27 144-170 24-50 (632)
184 TIGR02857 CydD ABC transporter 95.2 0.024 6.2E-07 34.2 3.7 88 98-187 312-418 (570)
185 cd03293 ABC_NrtD_SsuB_transpor 95.2 0.01 2.6E-07 36.7 1.8 35 137-171 17-52 (220)
186 PRK13648 cbiO cobalt transport 95.2 0.011 2.8E-07 36.5 1.9 42 141-183 27-68 (269)
187 PRK11248 tauB taurine transpor 95.1 0.0094 2.4E-07 37.0 1.5 36 137-172 14-50 (255)
188 COG4172 ABC-type uncharacteriz 95.1 0.012 3.2E-07 36.1 2.1 126 137-289 300-426 (534)
189 PRK11432 fbpC ferric transport 95.1 0.011 2.7E-07 36.6 1.7 34 138-171 20-54 (351)
190 cd03294 ABC_Pro_Gly_Bertaine T 95.1 0.011 2.9E-07 36.4 1.8 42 141-183 42-83 (269)
191 cd03261 ABC_Org_Solvent_Resist 95.1 0.012 3.1E-07 36.2 2.0 43 141-184 18-60 (235)
192 PRK11819 putative ABC transpor 95.1 0.011 2.9E-07 36.4 1.8 30 141-170 25-54 (556)
193 TIGR03258 PhnT 2-aminoethylpho 95.1 0.012 3.1E-07 36.2 1.9 31 141-171 23-53 (362)
194 TIGR02142 modC_ABC molybdate A 95.1 0.013 3.3E-07 36.0 2.0 42 137-179 11-52 (361)
195 cd03229 ABC_Class3 This class 95.1 0.012 3.2E-07 36.1 1.9 31 141-171 18-48 (178)
196 PRK10247 putative ABC transpor 95.1 0.012 3.1E-07 36.2 1.8 32 141-172 25-56 (225)
197 KOG0057 consensus 95.0 0.021 5.3E-07 34.7 3.0 30 144-173 373-402 (591)
198 PRK09183 transposase/IS protei 95.0 0.094 2.4E-06 30.4 6.4 51 144-202 96-146 (258)
199 PRK13633 cobalt transporter AT 95.0 0.011 2.9E-07 36.4 1.6 44 141-185 29-72 (281)
200 PRK13650 cbiO cobalt transport 95.0 0.01 2.6E-07 36.7 1.4 42 141-183 22-63 (276)
201 TIGR03608 L_ocin_972_ABC putat 95.0 0.013 3.4E-07 36.0 2.0 31 141-171 16-46 (206)
202 PRK10070 glycine betaine trans 95.0 0.01 2.6E-07 36.7 1.4 55 130-185 32-89 (400)
203 cd03235 ABC_Metallic_Cations A 95.0 0.0097 2.5E-07 36.8 1.2 40 143-182 19-58 (213)
204 PRK11701 phnK phosphonates tra 95.0 0.012 3.2E-07 36.1 1.8 47 136-183 18-65 (258)
205 PRK10744 phosphate transporter 95.0 0.014 3.5E-07 35.9 2.0 37 135-171 21-58 (257)
206 COG2274 SunT ABC-type bacterio 95.0 0.013 3.3E-07 36.1 1.8 32 141-172 491-522 (709)
207 TIGR01277 thiQ thiamine ABC tr 94.9 0.015 3.8E-07 35.6 2.1 29 142-170 17-45 (213)
208 cd03254 ABCC_Glucan_exporter_l 94.9 0.012 3E-07 36.3 1.5 31 142-172 22-52 (229)
209 PRK10419 nikE nickel transport 94.9 0.014 3.6E-07 35.8 1.9 47 137-184 25-72 (266)
210 PRK13632 cbiO cobalt transport 94.9 0.012 3.2E-07 36.1 1.6 30 143-172 30-59 (273)
211 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.9 0.014 3.4E-07 35.9 1.8 40 141-181 22-61 (218)
212 TIGR00929 VirB4_CagE type IV s 94.9 0.026 6.7E-07 34.0 3.2 41 151-191 518-560 (931)
213 cd03292 ABC_FtsE_transporter F 94.9 0.014 3.6E-07 35.8 1.8 53 131-184 8-61 (214)
214 PRK11650 ugpC glycerol-3-phosp 94.9 0.014 3.6E-07 35.8 1.8 36 136-171 16-52 (358)
215 COG3842 PotA ABC-type spermidi 94.9 0.017 4.3E-07 35.3 2.2 45 126-171 8-53 (352)
216 pfam01583 APS_kinase Adenylyls 94.8 0.23 6E-06 27.8 8.0 91 148-270 1-91 (157)
217 TIGR02324 CP_lyasePhnL phospho 94.8 0.017 4.4E-07 35.2 2.2 121 142-292 27-151 (224)
218 PRK13646 cbiO cobalt transport 94.8 0.015 3.8E-07 35.6 1.8 45 138-183 21-66 (286)
219 cd03299 ABC_ModC_like Archeal 94.8 0.015 3.8E-07 35.6 1.8 31 141-171 17-47 (235)
220 COG1127 Ttg2A ABC-type transpo 94.8 0.015 3.9E-07 35.5 1.8 120 141-296 26-152 (263)
221 PRK08116 hypothetical protein; 94.8 0.13 3.3E-06 29.4 6.6 63 132-202 90-153 (262)
222 cd03260 ABC_PstB_phosphate_tra 94.8 0.017 4.5E-07 35.2 2.1 32 141-172 18-49 (227)
223 cd03256 ABC_PhnC_transporter A 94.8 0.012 3.1E-07 36.2 1.2 44 135-179 12-56 (241)
224 PRK10575 iron-hydroxamate tran 94.8 0.013 3.4E-07 36.0 1.4 37 144-181 32-68 (265)
225 PRK13652 cbiO cobalt transport 94.8 0.011 2.8E-07 36.5 1.0 39 135-173 15-54 (277)
226 COG4608 AppF ABC-type oligopep 94.7 0.031 8E-07 33.5 3.3 48 137-185 26-74 (268)
227 cd03262 ABC_HisP_GlnQ_permease 94.7 0.017 4.3E-07 35.3 1.9 31 141-171 18-48 (213)
228 PRK13546 teichoic acids export 94.7 0.014 3.6E-07 35.8 1.5 44 137-180 37-81 (264)
229 COG3598 RepA RecA-family ATPas 94.7 0.098 2.5E-06 30.2 5.8 80 88-174 33-114 (402)
230 cd03301 ABC_MalK_N The N-termi 94.7 0.017 4.4E-07 35.2 1.9 35 137-171 13-48 (213)
231 PRK11124 artP arginine transpo 94.7 0.015 3.7E-07 35.7 1.5 30 141-170 20-49 (242)
232 cd03234 ABCG_White The White s 94.7 0.017 4.4E-07 35.2 1.9 35 137-171 20-55 (226)
233 cd03237 ABC_RNaseL_inhibitor_d 94.7 0.016 4E-07 35.5 1.6 38 136-173 6-49 (246)
234 PRK09452 potA putrescine/sperm 94.6 0.018 4.5E-07 35.1 1.8 36 136-171 29-65 (378)
235 TIGR03375 type_I_sec_LssB type 94.6 0.014 3.6E-07 35.8 1.3 13 465-477 680-692 (694)
236 TIGR03415 ABC_choXWV_ATP choli 94.6 0.014 3.7E-07 35.7 1.3 39 134-172 33-73 (382)
237 PRK13540 cytochrome c biogenes 94.6 0.017 4.3E-07 35.3 1.7 42 141-183 19-60 (200)
238 cd03252 ABCC_Hemolysin The ABC 94.6 0.016 4E-07 35.5 1.5 31 142-172 21-51 (237)
239 PRK13634 cbiO cobalt transport 94.6 0.013 3.3E-07 36.0 1.1 34 138-171 8-42 (276)
240 TIGR00972 3a0107s01c2 phosphat 94.6 0.02 5.1E-07 34.8 2.0 30 143-173 21-50 (248)
241 PRK11000 maltose/maltodextrin 94.6 0.018 4.6E-07 35.1 1.8 36 136-171 15-51 (369)
242 TIGR00635 ruvB Holliday juncti 94.6 0.054 1.4E-06 31.9 4.2 180 151-411 32-228 (305)
243 COG1132 MdlB ABC-type multidru 94.6 0.025 6.4E-07 34.2 2.5 41 142-182 348-388 (567)
244 PRK11264 putative amino-acid A 94.6 0.017 4.3E-07 35.3 1.6 28 144-171 22-49 (248)
245 PRK09493 glnQ glutamine ABC tr 94.6 0.018 4.5E-07 35.2 1.7 42 141-183 19-60 (240)
246 PRK11034 clpA ATP-dependent Cl 94.6 0.35 8.8E-06 26.7 13.8 151 152-358 210-404 (758)
247 PRK13644 cbiO cobalt transport 94.6 0.02 5E-07 34.8 1.9 47 138-185 16-63 (274)
248 PRK10895 putative ABC transpor 94.6 0.017 4.4E-07 35.2 1.6 44 138-181 17-61 (241)
249 PRK13640 cbiO cobalt transport 94.6 0.019 4.8E-07 35.0 1.8 30 142-171 27-56 (283)
250 PRK11819 putative ABC transpor 94.6 0.02 5.1E-07 34.8 1.9 14 463-476 523-536 (556)
251 PRK13542 consensus 94.6 0.016 4.1E-07 35.4 1.4 38 136-173 30-68 (224)
252 PRK07952 DNA replication prote 94.5 0.077 2E-06 31.0 4.9 40 132-174 81-121 (242)
253 TIGR01187 potA polyamine ABC t 94.5 0.019 4.9E-07 34.9 1.8 18 154-171 1-18 (331)
254 PRK11607 potG putrescine trans 94.5 0.018 4.7E-07 35.0 1.7 47 124-171 20-67 (377)
255 TIGR01846 type_I_sec_HlyB type 94.5 0.017 4.4E-07 35.2 1.6 49 116-171 464-512 (703)
256 cd00984 DnaB_C DnaB helicase C 94.5 0.074 1.9E-06 31.1 4.8 42 146-188 10-51 (242)
257 PRK10851 sulfate/thiosulfate t 94.5 0.02 5.1E-07 34.8 1.8 34 138-171 16-50 (352)
258 cd03236 ABC_RNaseL_inhibitor_d 94.5 0.024 6.2E-07 34.2 2.3 25 147-171 24-48 (255)
259 KOG4658 consensus 94.5 0.22 5.5E-06 28.0 7.1 102 138-265 169-272 (889)
260 PRK07773 replicative DNA helic 94.5 0.043 1.1E-06 32.6 3.5 54 132-185 185-240 (868)
261 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.5 0.019 4.8E-07 35.0 1.7 37 136-172 34-71 (224)
262 cd03296 ABC_CysA_sulfate_impor 94.5 0.02 5.2E-07 34.7 1.8 36 136-171 14-50 (239)
263 PRK11231 fecE iron-dicitrate t 94.5 0.018 4.5E-07 35.2 1.5 30 143-172 22-51 (255)
264 PRK13543 cytochrome c biogenes 94.4 0.017 4.4E-07 35.2 1.4 31 142-172 30-60 (214)
265 PRK09544 znuC high-affinity zi 94.4 0.023 5.8E-07 34.4 2.0 32 141-172 22-53 (251)
266 PRK11629 lolD lipoprotein tran 94.4 0.022 5.6E-07 34.5 1.9 31 141-171 27-57 (233)
267 cd04102 RabL3 RabL3 (Rab-like3 94.4 0.15 3.9E-06 29.0 6.1 23 151-173 2-24 (202)
268 PRK13643 cbiO cobalt transport 94.4 0.019 4.9E-07 34.9 1.5 46 136-181 18-64 (288)
269 PRK13647 cbiO cobalt transport 94.3 0.018 4.5E-07 35.2 1.2 36 136-171 17-53 (273)
270 COG0563 Adk Adenylate kinase a 94.3 0.34 8.7E-06 26.7 7.8 24 150-173 1-24 (178)
271 PRK11247 ssuB aliphatic sulfon 94.3 0.023 5.9E-07 34.4 1.8 39 141-180 30-68 (257)
272 cd03297 ABC_ModC_molybdenum_tr 94.3 0.024 6.1E-07 34.3 1.8 27 143-170 18-44 (214)
273 pfam03308 ArgK ArgK protein. T 94.3 0.057 1.4E-06 31.8 3.7 35 141-175 20-55 (267)
274 PRK08084 DNA replication initi 94.3 0.1 2.7E-06 30.1 5.1 42 148-190 44-85 (235)
275 cd03214 ABC_Iron-Siderophores_ 94.3 0.021 5.3E-07 34.7 1.5 32 142-173 18-49 (180)
276 PRK13538 cytochrome c biogenes 94.2 0.026 6.7E-07 34.0 2.0 31 141-171 19-49 (204)
277 cd03258 ABC_MetN_methionine_tr 94.2 0.023 5.8E-07 34.4 1.7 34 137-170 18-52 (233)
278 pfam00004 AAA ATPase family as 94.2 0.14 3.6E-06 29.3 5.6 21 152-172 1-21 (131)
279 TIGR02673 FtsE cell division A 94.2 0.031 7.9E-07 33.5 2.3 53 132-184 10-63 (215)
280 PRK12377 putative replication 94.2 0.33 8.4E-06 26.8 7.5 41 132-174 86-126 (248)
281 cd03231 ABC_CcmA_heme_exporter 94.2 0.028 7.2E-07 33.8 2.0 40 141-181 18-57 (201)
282 cd03269 ABC_putative_ATPase Th 94.2 0.03 7.6E-07 33.6 2.1 45 138-182 14-59 (210)
283 PRK03846 adenylylsulfate kinas 94.2 0.42 1.1E-05 26.1 8.0 90 148-269 23-112 (198)
284 cd03224 ABC_TM1139_LivF_branch 94.1 0.021 5.4E-07 34.6 1.3 36 137-172 13-49 (222)
285 PRK09580 sufC cysteine desulfu 94.1 0.027 7E-07 33.9 1.9 28 144-171 22-49 (248)
286 cd03263 ABC_subfamily_A The AB 94.1 0.027 6.8E-07 34.0 1.8 42 141-182 20-61 (220)
287 PRK11614 livF leucine/isoleuci 94.1 0.021 5.5E-07 34.6 1.3 36 137-172 18-54 (237)
288 COG3839 MalK ABC-type sugar tr 94.1 0.029 7.4E-07 33.7 2.0 29 142-170 22-50 (338)
289 PRK13651 cobalt transporter AT 94.1 0.028 7.1E-07 33.8 1.9 53 137-190 20-73 (304)
290 TIGR01271 CFTR_protein cystic 94.1 0.047 1.2E-06 32.3 3.0 76 102-183 1242-1319(1534)
291 PRK10253 iron-enterobactin tra 94.1 0.019 4.9E-07 34.9 1.0 35 138-172 21-56 (265)
292 PRK13548 hmuV hemin importer A 94.1 0.027 7E-07 33.9 1.8 36 137-172 15-51 (257)
293 PRK09984 phosphonate/organopho 94.1 0.029 7.4E-07 33.7 1.9 29 143-171 24-52 (262)
294 PRK13649 cbiO cobalt transport 94.0 0.022 5.6E-07 34.5 1.2 42 141-182 25-66 (280)
295 PTZ00265 multidrug resistance 94.0 0.034 8.6E-07 33.3 2.2 37 136-172 397-434 (1467)
296 PRK10938 putative molybdenum t 94.0 0.028 7.1E-07 33.8 1.7 27 144-170 24-50 (490)
297 TIGR02928 TIGR02928 orc1/cdc6 94.0 0.042 1.1E-06 32.7 2.6 136 141-314 31-184 (383)
298 PRK10619 histidine/lysine/argi 94.0 0.026 6.7E-07 34.0 1.5 29 142-170 24-52 (257)
299 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.023 5.9E-07 34.4 1.2 30 143-172 20-49 (144)
300 cd02027 APSK Adenosine 5'-phos 93.9 0.47 1.2E-05 25.8 8.0 86 153-270 3-88 (149)
301 TIGR00416 sms DNA repair prote 93.9 0.079 2E-06 30.9 3.9 153 132-315 84-247 (481)
302 cd03267 ABC_NatA_like Similar 93.9 0.022 5.7E-07 34.5 1.0 49 136-184 33-82 (236)
303 cd02028 UMPK_like Uridine mono 93.8 0.073 1.9E-06 31.1 3.6 23 152-174 2-24 (179)
304 PRK13547 hmuV hemin importer A 93.8 0.032 8.2E-07 33.4 1.8 31 141-171 19-49 (273)
305 PRK09536 btuD corrinoid ABC tr 93.8 0.024 6.1E-07 34.3 1.1 30 143-172 22-51 (409)
306 COG4619 ABC-type uncharacteriz 93.8 0.037 9.5E-07 33.0 2.1 66 143-247 23-88 (223)
307 PRK13645 cbiO cobalt transport 93.8 0.029 7.3E-07 33.8 1.5 47 136-183 23-70 (289)
308 PRK03695 vitamin B12-transport 93.8 0.033 8.3E-07 33.4 1.8 31 141-171 15-45 (245)
309 COG4988 CydD ABC-type transpor 93.8 0.061 1.6E-06 31.6 3.1 50 137-187 335-384 (559)
310 PRK06921 hypothetical protein; 93.8 0.28 7.3E-06 27.2 6.5 64 131-201 96-161 (265)
311 cd03217 ABC_FeS_Assembly ABC-t 93.7 0.036 9.1E-07 33.1 1.8 35 137-171 13-48 (200)
312 COG1123 ATPase components of v 93.7 0.047 1.2E-06 32.4 2.4 45 268-312 305-351 (539)
313 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.031 8E-07 33.5 1.5 32 141-172 17-48 (157)
314 PRK13636 cbiO cobalt transport 93.7 0.03 7.7E-07 33.6 1.4 49 135-184 17-66 (285)
315 cd03271 ABC_UvrA_II The excisi 93.7 0.039 1E-06 32.9 2.0 27 144-170 16-42 (261)
316 TIGR01193 bacteriocin_ABC ABC- 93.7 0.039 9.9E-07 32.9 2.0 40 141-180 492-533 (710)
317 CHL00131 ycf16 sulfate ABC tra 93.7 0.036 9.1E-07 33.1 1.8 30 142-171 25-54 (252)
318 cd03218 ABC_YhbG The ABC trans 93.6 0.029 7.4E-07 33.7 1.3 35 138-172 14-49 (232)
319 PRK13639 cbiO cobalt transport 93.6 0.03 7.8E-07 33.6 1.3 36 136-171 14-50 (275)
320 TIGR02759 TraD_Ftype type IV c 93.6 0.055 1.4E-06 31.9 2.6 43 140-183 196-242 (613)
321 COG3638 ABC-type phosphate/pho 93.6 0.062 1.6E-06 31.5 2.9 54 143-197 24-80 (258)
322 cd03238 ABC_UvrA The excision 93.6 0.043 1.1E-06 32.6 2.0 31 142-172 14-44 (176)
323 PRK10418 nikD nickel transport 93.5 0.039 1E-06 32.9 1.8 32 141-172 21-52 (254)
324 TIGR02769 nickel_nikE nickel i 93.5 0.048 1.2E-06 32.3 2.2 43 143-186 32-74 (267)
325 COG0488 Uup ATPase components 93.5 0.046 1.2E-06 32.4 2.1 33 140-172 20-52 (530)
326 PRK10908 cell division protein 93.5 0.039 1E-06 32.9 1.7 46 137-183 15-61 (222)
327 TIGR02204 MsbA_rel ABC transpo 93.5 0.049 1.3E-06 32.2 2.2 65 125-190 341-406 (576)
328 cd03115 SRP The signal recogni 93.5 0.57 1.4E-05 25.3 11.2 109 152-301 3-111 (173)
329 PRK11300 livG leucine/isoleuci 93.4 0.034 8.7E-07 33.3 1.4 48 135-183 16-64 (255)
330 PRK11144 modC molybdate transp 93.4 0.044 1.1E-06 32.5 1.9 35 138-172 13-47 (352)
331 PRK13539 cytochrome c biogenes 93.4 0.035 9E-07 33.2 1.4 31 141-171 20-50 (206)
332 PRK13409 putative ATPase RIL; 93.4 0.048 1.2E-06 32.3 2.1 29 146-174 96-124 (590)
333 TIGR03269 met_CoM_red_A2 methy 93.4 0.041 1E-06 32.8 1.7 14 400-413 427-440 (520)
334 COG3451 VirB4 Type IV secretor 93.4 0.084 2.1E-06 30.7 3.3 48 151-201 438-485 (796)
335 cd03270 ABC_UvrA_I The excisio 93.4 0.038 9.8E-07 32.9 1.5 31 141-171 13-43 (226)
336 cd03233 ABC_PDR_domain1 The pl 93.3 0.045 1.1E-06 32.5 1.8 32 141-172 25-56 (202)
337 PRK08118 topology modulation p 93.3 0.055 1.4E-06 31.9 2.2 23 150-172 2-24 (167)
338 PRK13536 nodulation factor exp 93.3 0.036 9.2E-07 33.1 1.3 46 138-183 21-67 (306)
339 PRK13638 cbiO cobalt transport 93.3 0.039 1E-06 32.9 1.5 29 144-172 22-50 (271)
340 cd03215 ABC_Carb_Monos_II This 93.3 0.029 7.5E-07 33.7 0.8 32 141-172 18-49 (182)
341 PRK11153 metN DL-methionine tr 93.3 0.044 1.1E-06 32.5 1.7 49 137-186 18-67 (343)
342 cd03259 ABC_Carb_Solutes_like 93.2 0.049 1.2E-06 32.2 1.9 35 137-171 13-48 (213)
343 PTZ00243 ABC transporter; Prov 93.2 0.049 1.3E-06 32.2 1.9 43 137-181 676-718 (1560)
344 TIGR00763 lon ATP-dependent pr 93.2 0.061 1.6E-06 31.6 2.4 32 142-173 442-474 (941)
345 PTZ00301 uridine kinase; Provi 93.2 0.12 3.1E-06 29.6 3.9 23 152-174 6-28 (210)
346 PRK10261 glutathione transport 93.2 0.047 1.2E-06 32.3 1.8 43 268-310 338-382 (623)
347 cd03265 ABC_DrrA DrrA is the A 93.2 0.036 9.2E-07 33.1 1.1 48 136-183 12-60 (220)
348 cd03232 ABC_PDR_domain2 The pl 93.2 0.05 1.3E-06 32.2 1.8 31 141-171 25-55 (192)
349 COG1136 SalX ABC-type antimicr 93.1 0.052 1.3E-06 32.1 1.9 48 137-185 18-66 (226)
350 COG0593 DnaA ATPase involved i 93.1 0.34 8.6E-06 26.7 6.1 37 148-184 112-149 (408)
351 COG0488 Uup ATPase components 93.1 0.05 1.3E-06 32.2 1.8 24 146-169 345-368 (530)
352 PRK13641 cbiO cobalt transport 93.1 0.035 9E-07 33.2 1.0 35 138-172 21-56 (286)
353 TIGR02211 LolD_lipo_ex lipopro 93.1 0.042 1.1E-06 32.7 1.4 26 144-169 26-51 (221)
354 cd03230 ABC_DR_subfamily_A Thi 93.1 0.05 1.3E-06 32.2 1.7 40 141-181 18-57 (173)
355 TIGR03411 urea_trans_UrtD urea 93.1 0.042 1.1E-06 32.6 1.4 49 135-184 13-62 (242)
356 PRK09435 arginine/ornithine tr 93.1 0.13 3.2E-06 29.6 3.8 36 141-176 40-76 (325)
357 COG0444 DppD ABC-type dipeptid 93.1 0.06 1.5E-06 31.7 2.1 37 137-173 18-55 (316)
358 PRK13541 cytochrome c biogenes 93.0 0.043 1.1E-06 32.6 1.3 33 140-172 17-49 (195)
359 PRK13537 lipooligosaccharide t 93.0 0.042 1.1E-06 32.7 1.3 48 137-184 18-66 (304)
360 PRK13544 consensus 93.0 0.05 1.3E-06 32.2 1.6 32 141-172 19-50 (208)
361 TIGR02315 ABC_phnC phosphonate 93.0 0.045 1.2E-06 32.5 1.4 38 135-175 16-53 (253)
362 TIGR01842 type_I_sec_PrtD type 93.0 0.057 1.4E-06 31.8 1.9 39 128-171 340-378 (556)
363 pfam00448 SRP54 SRP54-type pro 93.0 0.67 1.7E-05 24.8 10.2 43 152-194 4-46 (196)
364 cd03216 ABC_Carb_Monos_I This 92.9 0.05 1.3E-06 32.2 1.6 44 137-181 13-57 (163)
365 TIGR00750 lao LAO/AO transport 92.9 0.13 3.2E-06 29.5 3.6 78 370-454 195-276 (333)
366 PRK00889 adenylylsulfate kinas 92.8 0.7 1.8E-05 24.7 8.5 92 147-270 2-93 (175)
367 KOG0055 consensus 92.8 0.092 2.4E-06 30.4 2.8 55 137-194 366-421 (1228)
368 TIGR03522 GldA_ABC_ATP gliding 92.8 0.053 1.3E-06 32.0 1.5 47 138-185 16-63 (301)
369 pfam02283 CobU Cobinamide kina 92.8 0.33 8.3E-06 26.8 5.6 86 152-270 1-88 (166)
370 COG1126 GlnQ ABC-type polar am 92.8 0.066 1.7E-06 31.4 2.0 41 144-185 23-63 (240)
371 PRK11288 araG L-arabinose tran 92.8 0.042 1.1E-06 32.6 1.0 55 255-310 255-311 (501)
372 pfam00625 Guanylate_kin Guanyl 92.7 0.72 1.8E-05 24.6 7.5 21 152-172 4-24 (182)
373 COG1120 FepC ABC-type cobalami 92.7 0.062 1.6E-06 31.6 1.8 34 141-174 20-53 (258)
374 COG5635 Predicted NTPase (NACH 92.7 0.12 3E-06 29.7 3.2 53 135-187 208-263 (824)
375 cd03264 ABC_drug_resistance_li 92.7 0.052 1.3E-06 32.1 1.4 41 143-184 20-60 (211)
376 cd03268 ABC_BcrA_bacitracin_re 92.7 0.059 1.5E-06 31.7 1.7 45 138-182 14-59 (208)
377 TIGR03410 urea_trans_UrtE urea 92.6 0.067 1.7E-06 31.3 1.9 40 141-181 18-57 (230)
378 KOG1514 consensus 92.6 0.56 1.4E-05 25.3 6.6 104 137-267 409-521 (767)
379 pfam03193 DUF258 Protein of un 92.6 0.029 7.4E-07 33.7 0.0 34 139-172 25-58 (161)
380 TIGR02746 TraC-F-type type-IV 92.6 0.19 4.9E-06 28.3 4.2 162 137-335 474-671 (900)
381 cd03213 ABCG_EPDR ABCG transpo 92.6 0.065 1.7E-06 31.4 1.8 36 135-170 20-56 (194)
382 PRK10938 putative molybdenum t 92.6 0.066 1.7E-06 31.4 1.8 32 69-103 26-57 (490)
383 COG3854 SpoIIIAA ncharacterize 92.5 0.12 3.1E-06 29.6 3.1 39 152-190 140-180 (308)
384 PRK13549 xylose transporter AT 92.5 0.07 1.8E-06 31.2 1.8 45 254-298 256-308 (513)
385 cd01882 BMS1 Bms1. Bms1 is an 92.5 0.15 3.8E-06 29.1 3.5 26 152-177 42-67 (225)
386 cd03266 ABC_NatA_sodium_export 92.5 0.06 1.5E-06 31.6 1.5 45 137-181 18-63 (218)
387 TIGR03346 chaperone_ClpB ATP-d 92.5 0.29 7.5E-06 27.1 5.0 156 152-359 197-392 (852)
388 PRK10261 glutathione transport 92.5 0.078 2E-06 30.9 2.0 27 144-170 37-63 (623)
389 PRK05703 flhF flagellar biosyn 92.4 0.71 1.8E-05 24.6 6.9 47 143-189 204-252 (412)
390 PRK05642 DNA replication initi 92.4 0.22 5.6E-06 28.0 4.3 35 152-187 48-82 (234)
391 PRK10982 galactose/methyl gala 92.4 0.057 1.4E-06 31.8 1.3 95 253-355 246-343 (491)
392 PRK06893 DNA replication initi 92.4 0.47 1.2E-05 25.8 6.0 38 148-186 38-75 (229)
393 cd03227 ABC_Class2 ABC-type Cl 92.4 0.49 1.3E-05 25.7 6.1 33 145-177 17-49 (162)
394 COG4181 Predicted ABC-type tra 92.4 0.077 2E-06 31.0 1.9 27 144-170 31-57 (228)
395 cd03278 ABC_SMC_barmotin Barmo 92.3 0.082 2.1E-06 30.8 2.0 26 144-170 18-43 (197)
396 PRK07667 uridine kinase; Provi 92.3 0.16 4E-06 28.9 3.5 28 147-174 10-39 (190)
397 COG1134 TagH ABC-type polysacc 92.3 0.073 1.9E-06 31.1 1.7 31 141-171 45-75 (249)
398 PRK10535 macrolide transporter 92.3 0.056 1.4E-06 31.9 1.1 14 190-203 180-193 (648)
399 KOG0060 consensus 92.3 0.091 2.3E-06 30.5 2.2 23 400-425 570-592 (659)
400 PRK10865 protein disaggregatio 92.2 0.37 9.4E-06 26.5 5.3 157 152-360 202-398 (857)
401 cd03114 ArgK-like The function 92.2 0.19 4.8E-06 28.4 3.8 32 152-183 2-33 (148)
402 TIGR03420 DnaA_homol_Hda DnaA 92.2 0.18 4.6E-06 28.5 3.6 39 149-188 38-76 (226)
403 TIGR01447 recD exodeoxyribonuc 92.2 0.11 2.9E-06 29.8 2.6 180 145-337 238-459 (753)
404 KOG0079 consensus 92.1 0.12 3E-06 29.8 2.5 111 151-319 10-120 (198)
405 cd02025 PanK Pantothenate kina 92.0 0.2 5.2E-06 28.2 3.7 21 152-172 2-22 (220)
406 COG1125 OpuBA ABC-type proline 92.0 0.093 2.4E-06 30.4 2.0 37 136-172 13-50 (309)
407 COG1703 ArgK Putative periplas 92.0 0.21 5.4E-06 28.1 3.8 36 140-175 41-77 (323)
408 cd03219 ABC_Mj1267_LivG_branch 92.0 0.09 2.3E-06 30.5 1.9 36 136-171 12-48 (236)
409 cd02023 UMPK Uridine monophosp 92.0 0.17 4.3E-06 28.7 3.3 22 152-173 2-23 (198)
410 COG3840 ThiQ ABC-type thiamine 92.0 0.096 2.4E-06 30.3 2.0 32 139-170 15-46 (231)
411 COG1484 DnaC DNA replication p 92.0 0.19 4.9E-06 28.3 3.5 47 148-202 104-150 (254)
412 PRK07261 topology modulation p 92.0 0.1 2.6E-06 30.1 2.2 49 151-200 2-52 (171)
413 PRK07429 phosphoribulokinase; 91.9 0.18 4.6E-06 28.5 3.4 32 152-185 11-42 (331)
414 cd01854 YjeQ_engC YjeQ/EngC. 91.8 0.041 1.1E-06 32.7 0.0 32 140-171 152-183 (287)
415 TIGR02640 gas_vesic_GvpN gas v 91.8 0.12 3.1E-06 29.7 2.4 75 149-237 21-95 (265)
416 pfam08477 Miro Miro-like prote 91.8 0.094 2.4E-06 30.4 1.8 22 151-172 1-22 (118)
417 TIGR01241 FtsH_fam ATP-depende 91.8 0.15 3.8E-06 29.1 2.8 45 152-203 95-150 (505)
418 PRK13545 tagH teichoic acids e 91.8 0.082 2.1E-06 30.8 1.5 32 141-172 42-73 (549)
419 PRK10762 D-ribose transporter 91.7 0.1 2.5E-06 30.2 1.9 91 255-355 255-347 (501)
420 COG4167 SapF ABC-type antimicr 91.7 0.097 2.5E-06 30.3 1.7 29 143-171 33-61 (267)
421 COG1131 CcmA ABC-type multidru 91.6 0.069 1.8E-06 31.2 1.0 38 137-174 18-56 (293)
422 COG4525 TauB ABC-type taurine 91.6 0.12 3E-06 29.7 2.2 31 141-171 23-53 (259)
423 COG4586 ABC-type uncharacteriz 91.6 0.091 2.3E-06 30.5 1.6 54 138-192 39-93 (325)
424 KOG0731 consensus 91.6 0.24 6.2E-06 27.7 3.7 101 146-259 343-454 (774)
425 cd00544 CobU Adenosylcobinamid 91.6 0.64 1.6E-05 24.9 5.9 87 152-270 2-89 (169)
426 cd01125 repA Hexameric Replica 91.5 1 2.6E-05 23.6 8.2 39 153-191 5-53 (239)
427 PRK04841 transcriptional regul 91.5 0.99 2.5E-05 23.7 6.8 136 120-281 13-150 (903)
428 PRK06217 hypothetical protein; 91.5 0.13 3.3E-06 29.5 2.3 24 150-173 2-25 (185)
429 TIGR00955 3a01204 Pigment prec 91.5 0.095 2.4E-06 30.4 1.6 28 147-174 56-83 (671)
430 PRK13873 conjugal transfer ATP 91.4 0.23 5.9E-06 27.8 3.5 42 150-192 442-483 (815)
431 KOG0055 consensus 91.4 0.15 3.7E-06 29.1 2.5 10 89-98 397-406 (1228)
432 COG1123 ATPase components of v 91.4 0.12 3.1E-06 29.7 2.0 48 137-185 304-352 (539)
433 PRK09700 D-allose transporter 91.3 0.08 2E-06 30.8 1.1 96 254-357 262-360 (510)
434 TIGR00968 3a0106s01 sulfate AB 91.3 0.12 3.1E-06 29.7 1.9 39 144-183 21-59 (241)
435 COG0305 DnaB Replicative DNA h 91.3 0.29 7.4E-06 27.1 3.9 54 131-184 177-232 (435)
436 COG1135 AbcC ABC-type metal io 91.3 0.16 4E-06 28.9 2.5 50 135-185 17-67 (339)
437 PRK13898 type IV secretion sys 91.2 0.22 5.7E-06 27.9 3.2 29 150-178 447-475 (800)
438 TIGR01166 cbiO cobalt ABC tran 91.1 0.12 3.1E-06 29.7 1.8 35 136-170 4-39 (190)
439 COG0572 Udk Uridine kinase [Nu 91.1 0.23 5.8E-06 27.9 3.2 24 151-174 10-33 (218)
440 COG1122 CbiO ABC-type cobalt t 91.1 0.13 3.2E-06 29.5 1.9 30 141-170 22-51 (235)
441 PRK08939 primosomal protein Dn 91.1 0.5 1.3E-05 25.6 4.9 56 140-203 148-203 (306)
442 PRK00098 ribosome-associated G 91.0 0.051 1.3E-06 32.1 -0.2 32 139-170 154-185 (298)
443 PRK12288 ribosome-associated G 91.0 0.05 1.3E-06 32.2 -0.2 31 140-170 198-228 (344)
444 PRK11288 araG L-arabinose tran 91.0 0.099 2.5E-06 30.2 1.3 15 400-414 396-410 (501)
445 cd04150 Arf1_5_like Arf1-Arf5- 91.0 0.47 1.2E-05 25.8 4.7 95 151-281 2-98 (159)
446 PRK05480 uridine kinase; Provi 91.0 0.26 6.6E-06 27.5 3.4 22 152-173 9-30 (209)
447 cd04134 Rho3 Rho3 subfamily. 90.9 0.12 3.2E-06 29.6 1.7 23 150-172 1-23 (189)
448 PRK13549 xylose transporter AT 90.9 0.14 3.7E-06 29.2 2.0 30 400-432 405-436 (513)
449 cd01875 RhoG RhoG subfamily. 90.9 0.13 3.3E-06 29.5 1.8 23 150-172 4-26 (191)
450 PRK13830 conjugal transfer pro 90.9 0.26 6.7E-06 27.4 3.4 46 150-198 457-502 (818)
451 KOG1707 consensus 90.8 1.2 3E-05 23.2 6.8 21 151-171 11-31 (625)
452 PRK09270 frcK putative fructos 90.8 0.34 8.6E-06 26.7 3.8 25 150-174 35-59 (230)
453 PRK01889 ribosome-associated G 90.7 0.078 2E-06 30.9 0.5 31 140-170 184-215 (353)
454 KOG0743 consensus 90.7 0.62 1.6E-05 25.0 5.1 62 152-233 238-300 (457)
455 COG4136 ABC-type uncharacteriz 90.7 0.15 3.9E-06 29.0 2.0 33 142-174 21-53 (213)
456 pfam05673 DUF815 Protein of un 90.6 1.1 2.8E-05 23.3 6.4 32 131-172 45-76 (248)
457 TIGR01184 ntrCD nitrate ABC tr 90.6 0.16 4E-06 28.9 2.0 29 143-171 5-33 (230)
458 cd01127 TrwB Bacterial conjuga 90.6 0.31 7.9E-06 27.0 3.5 41 148-188 41-81 (410)
459 cd04101 RabL4 RabL4 (Rab-like4 90.6 0.15 3.8E-06 29.1 1.9 22 151-172 2-23 (164)
460 KOG1433 consensus 90.6 1.1 2.7E-05 23.4 6.2 121 124-265 84-211 (326)
461 KOG0062 consensus 90.5 0.18 4.6E-06 28.5 2.2 31 141-171 98-128 (582)
462 pfam03029 ATP_bind_1 Conserved 90.5 0.34 8.6E-06 26.7 3.6 30 154-183 1-30 (234)
463 TIGR01186 proV glycine betaine 90.4 0.16 4.1E-06 28.8 1.9 39 134-175 6-44 (372)
464 COG2255 RuvB Holliday junction 90.4 0.33 8.4E-06 26.8 3.5 21 151-171 54-74 (332)
465 PRK13891 conjugal transfer pro 90.4 0.34 8.8E-06 26.7 3.6 41 149-192 488-528 (852)
466 PRK05800 cobU adenosylcobinami 90.4 0.89 2.3E-05 24.0 5.7 89 149-270 1-92 (170)
467 PRK10787 DNA-binding ATP-depen 90.4 0.19 5E-06 28.3 2.3 35 139-173 339-373 (784)
468 TIGR03269 met_CoM_red_A2 methy 90.3 0.14 3.4E-06 29.3 1.5 23 144-166 21-43 (520)
469 COG1118 CysA ABC-type sulfate/ 90.3 0.19 4.7E-06 28.4 2.1 30 141-170 20-49 (345)
470 TIGR00073 hypB hydrogenase acc 90.3 0.28 7.1E-06 27.3 3.1 31 154-185 39-69 (225)
471 TIGR03499 FlhF flagellar biosy 90.3 0.31 7.9E-06 27.0 3.3 57 133-189 177-236 (282)
472 TIGR02982 heterocyst_DevA ABC 90.3 0.18 4.5E-06 28.6 2.0 53 141-195 23-79 (220)
473 pfam09848 DUF2075 Uncharacteri 90.3 1.3 3.3E-05 22.9 8.6 49 152-202 4-53 (348)
474 KOG0054 consensus 90.2 0.17 4.4E-06 28.6 2.0 118 136-263 536-671 (1381)
475 cd04153 Arl5_Arl8 Arl5/Arl8 su 90.2 0.52 1.3E-05 25.5 4.4 30 142-172 9-38 (174)
476 cd01871 Rac1_like Rac1-like su 90.2 0.16 4.1E-06 28.8 1.8 22 151-172 3-24 (174)
477 cd04127 Rab27A Rab27a subfamil 90.2 0.15 3.8E-06 29.0 1.6 22 151-172 6-27 (180)
478 cd00876 Ras Ras family. The R 90.2 0.16 4.1E-06 28.9 1.7 22 151-172 1-22 (160)
479 cd01861 Rab6 Rab6 subfamily. 90.1 0.16 4E-06 28.9 1.7 23 150-172 1-23 (161)
480 pfam03266 DUF265 Protein of un 90.1 0.41 1E-05 26.2 3.8 25 151-175 1-25 (168)
481 COG1100 GTPase SAR1 and relate 90.1 0.19 4.7E-06 28.4 2.0 23 150-172 6-28 (219)
482 PRK06696 uridine kinase; Valid 90.1 0.36 9.3E-06 26.5 3.5 34 141-174 16-51 (227)
483 PRK13409 putative ATPase RIL; 90.0 0.24 6E-06 27.8 2.5 31 69-102 96-126 (590)
484 pfam00485 PRK Phosphoribulokin 90.0 0.23 5.9E-06 27.8 2.4 23 152-174 2-24 (196)
485 cd04149 Arf6 Arf6 subfamily. 90.0 0.6 1.5E-05 25.1 4.5 24 149-172 9-32 (168)
486 COG4178 ABC-type uncharacteriz 89.9 0.22 5.6E-06 28.0 2.2 31 139-169 409-439 (604)
487 cd04176 Rap2 Rap2 subgroup. T 89.8 0.18 4.6E-06 28.5 1.7 22 151-172 3-24 (163)
488 cd01893 Miro1 Miro1 subfamily. 89.7 0.19 4.8E-06 28.4 1.8 22 151-172 2-23 (166)
489 cd01870 RhoA_like RhoA-like su 89.7 0.17 4.5E-06 28.6 1.6 23 150-172 2-24 (175)
490 cd04136 Rap_like Rap-like subf 89.7 0.19 4.8E-06 28.4 1.8 22 151-172 3-24 (163)
491 COG4604 CeuD ABC-type enteroch 89.6 0.3 7.7E-06 27.1 2.8 40 141-180 19-58 (252)
492 PRK10762 D-ribose transporter 89.6 0.18 4.6E-06 28.5 1.7 20 249-268 187-206 (501)
493 cd04146 RERG_RasL11_like RERG/ 89.6 0.2 5E-06 28.3 1.8 22 151-172 1-22 (165)
494 COG1162 Predicted GTPases [Gen 89.5 0.096 2.4E-06 30.3 0.2 40 131-170 143-185 (301)
495 cd00157 Rho Rho (Ras homology) 89.5 0.18 4.5E-06 28.6 1.5 22 151-172 2-23 (171)
496 cd04175 Rap1 Rap1 subgroup. T 89.5 0.19 4.9E-06 28.3 1.7 22 151-172 3-24 (164)
497 cd04138 H_N_K_Ras_like H-Ras/N 89.5 0.21 5.2E-06 28.1 1.8 22 151-172 3-24 (162)
498 cd04130 Wrch_1 Wrch-1 subfamil 89.4 0.2 5E-06 28.3 1.7 22 151-172 2-23 (173)
499 cd04177 RSR1 RSR1 subgroup. R 89.4 0.2 5.1E-06 28.2 1.7 22 151-172 3-24 (168)
500 PRK13721 conjugal transfer ATP 89.4 0.46 1.2E-05 25.9 3.6 35 152-187 477-511 (864)
No 1
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=0 Score=1156.54 Aligned_cols=460 Identities=72% Similarity=1.119 Sum_probs=449.4
Q ss_pred CCCCEEEEEEECCEEEEEECC-CCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEE
Q ss_conf 534138999955789998166-6523141899816995599999987089879999814878887888889779848988
Q gi|254780615|r 7 TESVGRIQQIMGAVVDVVFVN-SLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVP 85 (478)
Q Consensus 7 ~~~~GrV~~V~G~vvev~g~~-~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~Vp 85 (478)
..+.|||++|.|++|++.|+. .+|.+++.+.+..++..+.+||+++++++.|++++|++++||.+|++|.+||++++||
T Consensus 2 ~~~~G~V~~V~G~vV~v~~~~~~lp~i~~~l~~~~~~~~~~~EV~~~~g~~~v~~i~l~~t~Gl~~G~~V~~tg~~l~Vp 81 (466)
T PRK09280 2 AMNTGKIVQVIGPVVDVEFPEGELPKIYNALEVENGGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVKDTGAPISVP 81 (466)
T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCHHEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCEEEE
T ss_conf 98743899998228999827877541213999758995699998899669869999746867878999999589954987
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
Q ss_conf 59237655887875230167875300110023454441000013420002311002355702154100367566662489
Q gi|254780615|r 86 VGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVL 165 (478)
Q Consensus 86 VG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l 165 (478)
||+++||||+|++|+||||+|++....+||++++||++++|.+++++|+||||+||+|+||+||||+|||||+|||||+|
T Consensus 82 VG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGIkaID~l~pigkGqrigIfggaGvGKTvL 161 (466)
T PRK09280 82 VGKATLGRIFNVLGEPIDEAGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 161 (466)
T ss_pred ECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCHHH
T ss_conf 08644278868777526789987676545656789863235677863001813222316713774798557999980089
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999988505788526876216434599999985424420012223444332316999717668967877777778776
Q gi|254780615|r 166 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 (478)
Q Consensus 166 ~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ti 245 (478)
++|+|+|+++.|+++|||++||||+||++|||+||.+++ +++||++|++|||+||++|+++||+|+||
T Consensus 162 l~eli~n~a~~~~~v~V~a~IGER~rE~~e~~~e~~~~g------------~l~~tvlV~~~~depp~~R~~~~~~a~ti 229 (466)
T PRK09280 162 IMELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESG------------VLDKTALVFGQMNEPPGARLRVALTGLTM 229 (466)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCC------------CCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999999999865990999971423688999999766428------------76348999965889968999999999999
Q ss_pred HHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 899986-6996799971559998760124553114410110122356665788876317776532566654304766441
Q gi|254780615|r 246 AEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 246 AEyfrd-~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~d 324 (478)
|||||| ||+||||+|||+||||+|+||||+++||||+++|||||+|++|++|+||++++++||||+||||++|+||+||
T Consensus 230 AEyFRD~~g~dVLl~~D~ltRfa~A~rEvslllge~Ps~~GYppsl~~~l~~L~ER~~~~~~GSIT~i~~V~vp~DD~td 309 (466)
T PRK09280 230 AEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLTD 309 (466)
T ss_pred HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 99988617982899972668999999999986279998778894289898999985246899861378999954887778
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 05899997503425641156631886753223554311162012899999999999999989989999997365569988
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEE 404 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~ 404 (478)
|+|++++|||||||||||+||++||||||||+.|+||+|+|.+++++|+++|+++|++|++|+|+||+|+++|+|+||++
T Consensus 310 Pi~~~~~silDg~ivLsR~La~~G~yPAID~l~S~SRvm~p~ivg~~H~~~a~~vr~~L~~Y~elediIailG~deLs~~ 389 (466)
T PRK09280 310 PAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLVVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEE 389 (466)
T ss_pred CCHHHHHHHCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 71776523134079972658767999986866540125783218999999999999999988889999997484107998
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCC
Q ss_conf 99999999999998349971100005789736159999999999976764468978976418999998877439
Q gi|254780615|r 405 DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478 (478)
Q Consensus 405 ~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~~~~ 478 (478)
||++++|+++|++||+|||||+|.|||++|+||+++||+++|++|++|+||++||++|||+|+|||+.+|++++
T Consensus 390 dk~~v~rar~l~~fL~Qpf~vae~ftg~~g~~v~l~~t~~~~~~il~g~~d~~~e~~f~~~g~i~~~~~~~~~~ 463 (466)
T PRK09280 390 DKLTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKGILDGEYDHLPEQAFYMVGTIEEAIEKAKKL 463 (466)
T ss_pred HHHHHHHHHHHHHHHCCCCEEHHCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999998659864100026989528529999999999848987778978963146599999999987
No 2
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=0 Score=1146.78 Aligned_cols=471 Identities=65% Similarity=1.016 Sum_probs=450.4
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECC-CCCCCCCEEEECCCC-----CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 6456534138999955789998166-652314189981699-----5599999987089879999814878887888889
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVN-SLPPIFSSLETSDKG-----SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVI 76 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~-~~~~i~~~i~~~~~g-----~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~ 76 (478)
...+.+++|||++|+|++|+++|++ .+|.+++.+.+.... .++.+||++|++++.|++|+|++++||.+|++|.
T Consensus 3 ~~~~~k~~GrV~~V~G~VVdv~fp~~~lp~i~~~l~~~~~~~~g~~~~~~~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~ 82 (480)
T CHL00060 3 STLEKKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVI 82 (480)
T ss_pred CCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEE
T ss_conf 76654676089999932699993787742144432424778777644189999999469979999656877889989999
Q ss_pred ECCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 77984898859237655887875230167875300110023454441000013420002311002355702154100367
Q gi|254780615|r 77 DTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFG 156 (478)
Q Consensus 77 ~tg~~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfg 156 (478)
+||++++||||+++||||+|++|+||||+||+...++||++++||++++|.+++++|+||||+||+|+||+||||+||||
T Consensus 83 ~tg~~l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~~~~pi~~~aP~~~~r~~~~e~leTGIkaID~l~pigkGQRigIfg 162 (480)
T CHL00060 83 DTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFG 162 (480)
T ss_pred ECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEEEC
T ss_conf 58995498728533168788888835788998766503256789985555677861102704443125400366887656
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 56666248999999988505788526876216434599999985424420012223444332316999717668967877
Q gi|254780615|r 157 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARS 236 (478)
Q Consensus 157 g~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~ 236 (478)
|+|||||+|++|+|+|++++++++|||++||||+||++|||+||+++++.. ...-..+++++|++|||+||++|+
T Consensus 163 gaGvGKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl~-----~~~~~~s~~vlV~~~~depp~~R~ 237 (480)
T CHL00060 163 GAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIN-----EQNIAESKVALVYGQMNEPPGARM 237 (480)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCC-----CCCCCCEEEEEEEECCCCCHHHHH
T ss_conf 899887899999996120037988999996677367999999998718553-----355443048999735678768899
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 7777787768999866-996799971559998760124553114410110122356665788876317776532566654
Q gi|254780615|r 237 RVALTGLTVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAI 315 (478)
Q Consensus 237 ~~~~~a~tiAEyfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV 315 (478)
++||+|+||||||||+ |+|||++|||+||||+|+||||+++||||+++|||||+|++|++|+||++++++||||+||||
T Consensus 238 ~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L~ER~~~~~~GSITa~~~V 317 (480)
T CHL00060 238 RVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAV 317 (480)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 99999888999998748970899954628999888789986279998667896488887788886327888741567789
Q ss_pred EECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30476644105899997503425641156631886753223554311162012899999999999999989989999997
Q gi|254780615|r 316 YVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAI 395 (478)
Q Consensus 316 ~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~ 395 (478)
++|+||+||||||+++|||||||||||+||++||||||||+.|+||+|+|.+++++|+++|+++|++|++|+|+||+|++
T Consensus 318 ~v~~DD~tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~a~~v~~~L~~Y~el~diIai 397 (480)
T CHL00060 318 YVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 397 (480)
T ss_pred EECCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 70377666761455522125149983658878998973752010004797648999999999999999998999999997
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 36556998899999999999998349971100005789736159999999999976764468978976418999998877
Q gi|254780615|r 396 LGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKA 475 (478)
Q Consensus 396 ~g~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~ 475 (478)
+|+++||++||.+++|+++|++||+|||||+|.|||++|+||+++|||++|++||+|++|++||++|||+|+|||+.+||
T Consensus 398 lG~deLs~~dk~~v~rar~l~~fl~Qpf~~~e~ftg~~g~~v~l~~t~~~~~~il~g~~d~~~e~~~~~~g~~~~~~~k~ 477 (480)
T CHL00060 398 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKA 477 (480)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf 58642798899999999999999658522345415999538609999999999848987779978963046699999998
Q ss_pred HCC
Q ss_conf 439
Q gi|254780615|r 476 EVI 478 (478)
Q Consensus 476 ~~~ 478 (478)
+++
T Consensus 478 ~~~ 480 (480)
T CHL00060 478 ANL 480 (480)
T ss_pred HCC
T ss_conf 429
No 3
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=0 Score=1128.50 Aligned_cols=456 Identities=59% Similarity=0.932 Sum_probs=441.9
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCH
Q ss_conf 41389999557899981666523141899816995599999987089879999814878887888889779848988592
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGE 88 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~ 88 (478)
.+|||++|+|++|+++|++...+..|.+...+ +.++.+||+++++++.|++|+|++++||++|++|++||++++||||+
T Consensus 2 ~~GrV~~V~G~vVev~~~~~~l~~i~~i~~~~-~~~~~~EVv~~l~~~~v~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~ 80 (459)
T PRK12597 2 MIGRIIKIRGAVVDVEFEEGALPAINQALTTH-DGPTLLEVKQHLDETTVRAIALGSTAGLARGDEVRNTGAPIEVPVGE 80 (459)
T ss_pred CCEEEEEEECCEEEEEECCCCCCCCEEEEEEC-CCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCEEEEECH
T ss_conf 83799999842899995788877705899927-99589999798479879999813877888999999689945987086
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHH
Q ss_conf 37655887875230167875300110023454441000013420002311002355702154100367566662489999
Q gi|254780615|r 89 ATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIME 168 (478)
Q Consensus 89 ~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~ 168 (478)
+|||||+|++|+|||+++++...++||++++|||+++|.+++++|+||||+||+|+||+||||+|||||+|||||+|++|
T Consensus 81 ~lLGRV~d~lG~PiDg~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGIkaID~l~pigrGqrigIfggaGvGKTvL~~~ 160 (459)
T PRK12597 81 AVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTELLETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMME 160 (459)
T ss_pred HHCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 33368767888626888888877455546789984335777872003805554126635787777436899982157899
Q ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99988505788526876216434599999985424420012223444332316999717668967877777778776899
Q gi|254780615|r 169 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEH 248 (478)
Q Consensus 169 ~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEy 248 (478)
+|+|+++.++++|||++||||+||++|||+++.+++ +|+||++|++|||+||++|+++||+|+|+|||
T Consensus 161 ii~n~~~~~~~v~V~~~iGER~rEv~e~~~el~~~g------------~l~~tvvV~~~~depp~~R~~~~~~a~tiAEy 228 (459)
T PRK12597 161 LIFNISKRHQGSSVFAGVGERSREGHELYLEMKESG------------VLDKTVMVYGQMNEPPGARMRVVLTGLTAAEY 228 (459)
T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCC------------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999877551783688862454688999999986368------------75248999806889999998777788899999
Q ss_pred HHH-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHH
Q ss_conf 986-6996799971559998760124553114410110122356665788876317776532566654304766441058
Q gi|254780615|r 249 FRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAP 327 (478)
Q Consensus 249 frd-~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~ 327 (478)
||| +|+||||+|||+||||+|+||||+++||||+++||||++|+++++|+||++++++||||+||||++|+||+|||||
T Consensus 229 FrD~~g~dVLl~~D~ltR~A~A~rEisl~lge~P~~~GY~psl~~~l~~l~ER~~~~~~GSIT~~~~V~v~~dD~tdPi~ 308 (459)
T PRK12597 229 FRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAALQERIASTKNGSITSIQAVYVPADDLTDPAA 308 (459)
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCH
T ss_conf 98637997899955768999999999986379998667695178889999987516899751267899814888677525
Q ss_pred HHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99997503425641156631886753223554311162012899999999999999989989999997365569988999
Q gi|254780615|r 328 ATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKL 407 (478)
Q Consensus 328 ~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~~~~ 407 (478)
|+++|||||||||||+||++||||||||+.|+||+|++++++++|+++|+++|++|++|+|+||+|+++|+++||++||.
T Consensus 309 ~~~~silDg~ivLsr~la~~g~yPAID~l~S~SR~m~~~ivg~~H~~~a~~~~~~l~~y~eledii~i~G~deLs~~d~~ 388 (459)
T PRK12597 309 VAIFSHLDSSVVLSRDQAAKGIYPAIDPLASSSRLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKI 388 (459)
T ss_pred HHHEEECCEEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 54311034289982558777999766766653224787669999999999999999998899999997585107999999
Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHC
Q ss_conf 9999999999834997110000578973615999999999997676446897897641899999887743
Q gi|254780615|r 408 VVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEV 477 (478)
Q Consensus 408 ~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~~~ 477 (478)
+++|+++|++||+|||||+|.|||.+|+||+++||+++|++|++|++|++||++|||+|+|||+.+|++.
T Consensus 389 ~v~rar~l~~fl~Qpf~v~e~ftg~~g~~v~~~~t~~~~~~il~g~~d~~~e~~~~~~g~~~~~~~~~~~ 458 (459)
T PRK12597 389 IVKRARQLQRFLTQPFFVTEAFTGQPGVSVPLEETLASCERILNGEYDDWSESSFYMIGSLDDLRTKEEA 458 (459)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHC
T ss_conf 9999999999865871133441489970851999999999996798778897996113659999766533
No 4
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=1123.93 Aligned_cols=448 Identities=51% Similarity=0.871 Sum_probs=438.3
Q ss_pred EEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCHHH
Q ss_conf 38999955789998166652314189981699559999998708987999981487888788888977984898859237
Q gi|254780615|r 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEAT 90 (478)
Q Consensus 11 GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~~l 90 (478)
|||++|+|++|+++|++.+|+++|.+....+ .++.+||+++++++.|++|+|++++||++|++|++||++++||||++|
T Consensus 1 G~V~~V~G~VVdv~f~~~~p~i~~~l~~~~~-~~~~~ev~~~l~~~~V~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGRE-GEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CEEEEEECCEEEEEECCCCCCHHCEEEECCC-CCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCEEEECCCCC
T ss_conf 9699997647999906877502018895799-959998701227988999990487788899999928995488717210
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 65588787523016787530011002345444100001342000231100235570215410036756666248999999
Q gi|254780615|r 91 LGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 91 LGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
||||+|++|+||||+|++...+++|++++||++++|.+++++|+||||+||+|+|++||||+|||||+|||||+|++|+|
T Consensus 80 LGRV~d~lG~PiDg~g~i~~~~~~~i~~~~p~~~~R~~~~e~l~TGIkaID~l~pigrGqr~gIfggaGvGKT~Ll~e~i 159 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI 159 (449)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEHHHCCCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 67888056654678999887641323578998555677786400284402302452457565665279998410189999
Q ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98850578852687621643459999998542442001222344433231699971766896787777777877689998
Q gi|254780615|r 171 NNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250 (478)
Q Consensus 171 ~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfr 250 (478)
+|+++.++++|||++||||+||++|||++|.+++ +|+||++|++|||+||++|+++||+|+|||||||
T Consensus 160 ~n~~~~~~~v~V~~~IGER~rE~~e~~~el~~~g------------~l~~tv~V~a~~depp~~R~~~~~~a~tiAEyfr 227 (449)
T TIGR03305 160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAG------------VLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFR 227 (449)
T ss_pred HHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCC------------CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8656414886899997452167999999987536------------6542699983698987999999998776999988
Q ss_pred -HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHH
Q ss_conf -6699679997155999876012455311441011012235666578887631777653256665430476644105899
Q gi|254780615|r 251 -DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPAT 329 (478)
Q Consensus 251 -d~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~ 329 (478)
++|+|||++|||+||||+|+||||+++||||+++|||||+|++|++|+||++++++||||+||||++|+||+|||||+|
T Consensus 228 d~~g~dVLl~~D~ltr~a~A~rEvsl~lg~~P~~~GYpp~vf~~l~~L~ER~~~~~~GSITa~~~V~~~~dD~tdPi~~~ 307 (449)
T TIGR03305 228 DDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAITSIQAVYVPADDFTDPAAVH 307 (449)
T ss_pred HCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHH
T ss_conf 61798089999676899999989998638999877879719999899998524899986678878971388766755554
Q ss_pred HHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99750342564115663188675322355431116201289999999999999998998999999736556998899999
Q gi|254780615|r 330 SFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVV 409 (478)
Q Consensus 330 ~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~~~~~i 409 (478)
++|||||||||||+||++||||||||+.|+||+|++.+++++|+++|+++|++|++|+|++|+|+++|+++||++||.++
T Consensus 308 ~~silDg~ivLsr~la~~G~yPAId~l~S~SRv~~~~iv~~~H~~va~~~~~~la~y~el~diiai~G~~eL~~~dk~~v 387 (449)
T TIGR03305 308 TFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVV 387 (449)
T ss_pred HEEECCCEEEEEHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 31012702787076896799997177633553488100679999999999999998899999998748510699999999
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHH
Q ss_conf 99999999834997110000578973615999999999997676446897897641899999
Q gi|254780615|r 410 ARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEA 471 (478)
Q Consensus 410 ~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~ 471 (478)
+|++++++||+|||||+|+|||.+|+||+++||+++|++|++|++|++||++|||+|+|||+
T Consensus 388 ~ra~rl~~fL~Qpf~vae~ftg~~G~~v~l~~t~~~~~~il~g~~d~~~e~~~~~~g~~~~a 449 (449)
T TIGR03305 388 NRARRLERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDEFQDYPERDLYMIGKIDEA 449 (449)
T ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCC
T ss_conf 99999999857985112322598951861999999999984898677998997146773569
No 5
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00 E-value=0 Score=1103.17 Aligned_cols=419 Identities=29% Similarity=0.472 Sum_probs=398.3
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCCEEEE--CCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 653413899995578999816665231418998--169955999999870898799998148788878888897798489
Q gi|254780615|r 6 KTESVGRIQQIMGAVVDVVFVNSLPPIFSSLET--SDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 6 ~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~--~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
..+..|||++|.|.+++|.+|++..|++|+|.. ..+...+.+|||+|.+ +.+.++||++.+||+.|++|.+||++++
T Consensus 2 ~~~~~Grv~~v~G~Ll~A~lP~a~vGELC~i~~nW~~~~~~~~AEVVGf~~-~~alLsPlg~~~G~~~g~~V~p~g~~~~ 80 (430)
T TIGR02546 2 LVRVRGRVTEVSGTLLKAVLPGARVGELCLIKRNWPRDPSQLLAEVVGFTG-DEALLSPLGELSGISPGSEVIPTGRPLS 80 (430)
T ss_pred CCEEEEEEEEECCEEEEEECCCEEEEEEEEEECCCCCCCCCCEEEEEEEEC-CEEEEECCCCCCCCCCCCEEEECCCCEE
T ss_conf 831476677521338999817606740345522378985661378998727-8677602665332565667862584202
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHH-------HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 88592376558878752301678753001-------10023454441000013420002311002355702154100367
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSE-------KRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFG 156 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~-------~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfg 156 (478)
|+|||+|||||+|+||||||++++++... .||+.++||||+.|++|++||.|||||||+|+|||+|||+||||
T Consensus 81 i~vGe~LLGRVlDG~GrPlD~~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIFA 160 (430)
T TIGR02546 81 IRVGEALLGRVLDGFGRPLDGKGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFA 160 (430)
T ss_pred EEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 21060003200456577037888787556430246457656781048767533465101466754344036653057870
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 56666248999999988505788526876216434599999985424420012223444332316999717668967877
Q gi|254780615|r 157 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARS 236 (478)
Q Consensus 157 g~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~ 236 (478)
+|||||||||.||++| +++|+||+||||||||||+||++. ..+++.++|||+||+|||+|+.+|.
T Consensus 161 ~aG~GKSTLL~~i~~g---~~ADv~V~ALIGERGREVREFiE~------------~lg~e~~~RsVlVvsTSDrss~eR~ 225 (430)
T TIGR02546 161 GAGVGKSTLLGMIARG---ASADVNVIALIGERGREVREFIEH------------LLGEEGRKRSVLVVSTSDRSSLERL 225 (430)
T ss_pred CCCCCHHHHHHHHHCC---CCCCEEEEEECCCCCHHHHHHHHH------------CCCHHHCCCEEEEEECCCCCHHHHH
T ss_conf 8886166899998618---988789986027876047888752------------0783052424899607986679999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 77777877689998669967999715599987601245531144101101223566657888763177765325666543
Q gi|254780615|r 237 RVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIY 316 (478)
Q Consensus 237 ~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~ 316 (478)
+|||+|||||||||||||+||||||||||||+|+|||+|+.||||+|+|||||||+.+|||+||+|++.+||||||||||
T Consensus 226 ~AAy~ATaIAEYFRDQGk~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~~e~GSITA~YTVL 305 (430)
T TIGR02546 226 KAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGNSEKGSITALYTVL 305 (430)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCEEEEEEEE
T ss_conf 99878879999999739907988402779999987788753784002577873665075012278611296253456787
Q ss_pred ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04766441058999975034256411566318867532235543111620128999999999999999899899999973
Q gi|254780615|r 317 VPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAIL 396 (478)
Q Consensus 317 ~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~ 396 (478)
+++||++|||+|+++|||||||||||+||++|||||||||.|+||+|+ +|++++|+++|.++|++|++|+|.|+||++|
T Consensus 306 vEgDd~~dP~ADEvRSILDGHIvLsR~LA~~~HyPAIDVLaS~SRvm~-~vv~~eH~~aA~~lR~LLA~Y~e~e~LI~lG 384 (430)
T TIGR02546 306 VEGDDMNDPIADEVRSILDGHIVLSRKLAERNHYPAIDVLASLSRVMS-QVVSKEHRRAAGKLRRLLAKYKEVELLIRLG 384 (430)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 627779984366554454236899899974168863566523664236-7788789999999999999999998898744
Q ss_pred CCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 65569988-99999999999998349971100005789736159999999999976
Q gi|254780615|r 397 GMDELSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 397 g~~~l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
.|.+++|+ .|.+|++.+.|++||+|++.... +.|+|++.++++.+
T Consensus 385 EY~~G~D~~~D~A~~~~~~i~~FL~Q~~~E~~----------~~e~tl~~L~~~~~ 430 (430)
T TIGR02546 385 EYQPGSDPETDKAIDKIDAIRAFLRQSTDEKS----------SYEETLEQLHALVA 430 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC----------CHHHHHHHHHHHHC
T ss_conf 88899898899999757788987148887778----------98999999999819
No 6
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=100.00 E-value=0 Score=1091.28 Aligned_cols=418 Identities=31% Similarity=0.513 Sum_probs=393.5
Q ss_pred CCCCEEEEEEECCEEEEEECCCCC---CCCCEEEECCC--CCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC--
Q ss_conf 534138999955789998166652---31418998169--95599999987089879999814878887888889779--
Q gi|254780615|r 7 TESVGRIQQIMGAVVDVVFVNSLP---PIFSSLETSDK--GSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTG-- 79 (478)
Q Consensus 7 ~~~~GrV~~V~G~vvev~g~~~~~---~i~~~i~~~~~--g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg-- 79 (478)
.+.+|+|++|.|+++|+.|+.... |..|.+....+ ..++.||||+| +++.+.+|||++.+||++|++|...+
T Consensus 1 ~~~~G~V~~v~G~~~e~~Gp~~~~~~~G~~c~i~~~~~g~~~~~~aEVvGF-~~~~~~lmP~~~~~Gi~~G~~V~~~~~~ 79 (439)
T TIGR02545 1 VRIVGRVTKVAGLTVEVAGPKAAVARLGDLCEIEPQEGGEEKHVLAEVVGF-EGDRVILMPYEPLEGIRPGDRVFLLGDI 79 (439)
T ss_pred CCEEEEEEEEECCEEEEECCCCCEEECCCEEEEECCCCCCCCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 915889999884388985442130213627899658885210156899987-3883698644655562457657863431
Q ss_pred -----CEEEEECCHHHHHHHHHHHHHHCC----CCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----848988592376558878752301----67875300110023454441000013420002311002355702154
Q gi|254780615|r 80 -----TQITVPVGEATLGRIMNVIGEPVD----DQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGG 150 (478)
Q Consensus 80 -----~~l~VpVG~~lLGRViD~lG~PLD----g~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gq 150 (478)
++++||||++|||||||+||+||| +++.+....++|+.+++|||++|.+|.++|+|||||||+|+||||||
T Consensus 80 ad~~~~~~~~~~G~~LLGRv~D~lG~PlDg~G~~~~~~~~~~~~~l~~~~pnpl~R~rI~~~l~tGVRaId~lLT~GrGQ 159 (439)
T TIGR02545 80 ADAGGRSLSIPVGDELLGRVIDALGRPLDGKGAGGGLIDATVYRPLRREPPNPLDRRRIEEVLDTGVRAIDALLTIGRGQ 159 (439)
T ss_pred CCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 46545664202774440323867878657877888766565555656783074678757861121231011103655641
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10036756666248999999988505788526876216434599999985424420012223444332316999717668
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
|+||||||||||||||+||++| .++||+|+||||||||||+||+++ ++++++|+|||+|+||||+
T Consensus 160 R~GIFAGSGVGKSTLLGMiAr~---t~ADV~VIALIGERGREV~EFiE~------------~LG~eGl~kSVVVVATSD~ 224 (439)
T TIGR02545 160 RLGIFAGSGVGKSTLLGMIARY---TEADVNVIALIGERGREVKEFIED------------DLGEEGLKKSVVVVATSDE 224 (439)
T ss_pred EEEEECCCCHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCCHHHHHH------------HCCCCCCCCEEEEEECCCC
T ss_conf 0266337744478898887506---658878998444656643135543------------0351102540799827998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHC---CCC-C
Q ss_conf 967877777778776899986699679997155999876012455311441011012235666578887631---777-6
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERIT---TTL-K 306 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag---~~~-~ 306 (478)
||++|.+|||+||+|||||||||||||||||||||||||+|||||++||||+++|||||+|+.||+|+|||| ..+ +
T Consensus 225 spl~R~~aA~~A~~iAEYFRDqGk~VLL~~DSlTRFAmAqREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG~~p~~~~~ 304 (439)
T TIGR02545 225 SPLMRIRAAYAATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFSELPRLLERAGIVPGAKGG 304 (439)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 68999888899999999998649834776211788998988999871787666789704899999999870864698887
Q ss_pred CCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHH
Q ss_conf 53256665430476644105899997503425641156631886753223554311162012899999999999999989
Q gi|254780615|r 307 GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRY 386 (478)
Q Consensus 307 GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y 386 (478)
||||+||||||+|||++|||+|++||+|||||||||+||++||||||||+.|+||+|. ++++++|++.+.++|+++++|
T Consensus 305 GsITa~yTVLVeGDD~~ePiAD~~RgiLDGHIvLsR~lA~~G~YPaIDvl~SiSR~m~-~i~~~e~~~~a~~~r~l~a~Y 383 (439)
T TIGR02545 305 GSITAFYTVLVEGDDMNEPIADAVRGILDGHIVLSRKLAERGHYPAIDVLRSISRLMP-DIVSPEHNKAARKLRKLLATY 383 (439)
T ss_pred CEEEEEEEEEEECCCCCCHHHHHHHHHCCCEEEECHHHHHCCCCCCCCCCHHHHHHHH-HHCCHHHHHHHHHHHHHHHHH
T ss_conf 3056899998736899873787750010220773226764588987572222788777-627988999999999999988
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 9899999973655699889-9999999999998349971100005789736159999999999976
Q gi|254780615|r 387 KSLQDIIAILGMDELSEED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 387 ~el~~~i~~~g~~~l~~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
++.||||++|+|.++||++ |.+|+..++|++||+|....+. +.+++++.+.+|+.
T Consensus 384 ~~~eDLi~iGaY~~GSdp~~D~AI~~~p~i~~FL~Q~~~E~~----------~~~~~~~~L~~i~~ 439 (439)
T TIGR02545 384 KDAEDLIRIGAYKKGSDPEVDKAIKLYPKIEAFLRQDIEEAS----------SFEESLEALKEILA 439 (439)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC----------CHHHHHHHHHHHHC
T ss_conf 888999981786468887899985100258998467975455----------77899999999829
No 7
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1069.08 Aligned_cols=420 Identities=30% Similarity=0.502 Sum_probs=397.6
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCC-CCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC----
Q ss_conf 5653413899995578999816665231418998169-95599999987089879999814878887888889779----
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDK-GSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTG---- 79 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~-g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg---- 79 (478)
...+.+|+|++|.|.+||+.||...+|..|.|..... ...+.+|||+|.+ +.|.+|||+++.|+.+|++|..++
T Consensus 19 ~~~~~~G~v~~v~Gl~~ea~gp~~~vG~~c~I~~~g~~~~~~~~EVVGf~~-~~v~LmPy~~~~G~~~G~~V~~~~isae 97 (455)
T TIGR01026 19 EAVKRVGRVTKVKGLLIEAVGPQASVGDLCLIERKGSEGKEVVAEVVGFNG-EKVLLMPYEEVEGVEPGSKVLAKNISAE 97 (455)
T ss_pred CCEEEEEEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEC-CEEEECCCCCCCCCCCCCEEEEECCCCC
T ss_conf 630257899998526898524776677778999737898779999885206-7567523654443353452332043300
Q ss_pred CEEEEE---CCHHHHHHHHHHHHHHCCCCC--CCCCHHHH-CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 848988---592376558878752301678--75300110-023454441000013420002311002355702154100
Q gi|254780615|r 80 TQITVP---VGEATLGRIMNVIGEPVDDQG--AIISSEKR-AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIG 153 (478)
Q Consensus 80 ~~l~Vp---VG~~lLGRViD~lG~PLDg~g--~i~~~~~~-pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~g 153 (478)
+.+++| +|++|||||+|+||+|||+++ .+...... |+..+|+||++|.++++.|.||||+||+|+|+|||||+|
T Consensus 98 ~~L~~~qlP~G~~LLGRVld~~G~PiD~~~~~~~~~~~~~~~l~~~~~nPl~R~~i~~~~~tGVR~iD~LLTvGkGQR~G 177 (455)
T TIGR01026 98 EGLSIKQLPVGDGLLGRVLDGLGKPIDGKGKGFLDNVETEPALITAPINPLKREPIREILSTGVRSIDGLLTVGKGQRIG 177 (455)
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCEEECCCCCCCCCCCEE
T ss_conf 25455743368764024485468711377776665430125524689886676300021003645310103555665013
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 36756666248999999988505788526876216434599999985424420012223444332316999717668967
Q gi|254780615|r 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPG 233 (478)
Q Consensus 154 Ifgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~ 233 (478)
|||||||||||||+||++| +.++||+|+|+||||||||+||+++ ++++++|+|||+|+||||+||.
T Consensus 178 IFAGSGVGKStLlGMIARn--~~~ADv~ViALIGERGREV~EFIE~------------~LG~EGLkrSV~VVaTSD~SPl 243 (455)
T TIGR01026 178 IFAGSGVGKSTLLGMIARN--NTEADVNVIALIGERGREVKEFIEK------------DLGEEGLKRSVVVVATSDQSPL 243 (455)
T ss_pred EEECCCCCHHHHHHHHHHC--CCCCCEEEEEEECCCCCCHHHHHHH------------HCCCCCCCEEEEEEECCCCCHH
T ss_conf 5503760034456676300--6789827998643777741578863------------1365666011799836886388
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHC--CCCCC-CEE
Q ss_conf 877777778776899986699679997155999876012455311441011012235666578887631--77765-325
Q gi|254780615|r 234 ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERIT--TTLKG-SIT 310 (478)
Q Consensus 234 ~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag--~~~~G-SIT 310 (478)
+|+++||+||+||||||||||||||||||+||||+|+|||+|++||||+++|||||+|..+|+|+|||| .+++| |||
T Consensus 244 ~R~~GAy~At~iAEYFrdqGk~VlLlmDSvTRfA~AqREiGLA~GEPP~~kGYtPSVF~~LP~LlERaG~G~~~~GGSIT 323 (455)
T TIGR01026 244 LRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSLLPRLLERAGKGASGKGGSIT 323 (455)
T ss_pred HHHHHHHEEHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 88732640025435465218705620202789988988998743777777777854889989999760687357795798
Q ss_pred EEEEEEECCCCC-CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 666543047664-4105899997503425641156631886753223554311162012899999999999999989989
Q gi|254780615|r 311 SVQAIYVPADDL-TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSL 389 (478)
Q Consensus 311 ~~~tV~~~~dD~-~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el 389 (478)
|||||||+|||+ +|||+|++++||||||||||+||++||||||||+.|+||+|. +|++++|++.++++|++||.|+++
T Consensus 324 AFYTVLVeGDD~s~ePiAD~~r~ILDGHIVLSR~LA~~g~YPAIdvl~S~SR~~~-~i~s~~~~~~~~~fR~lLs~y~~~ 402 (455)
T TIGR01026 324 AFYTVLVEGDDLSNEPIADSVRGILDGHIVLSRALADRGHYPAIDVLASISRLMT-AIVSEEHKKAARKFRELLSKYKEN 402 (455)
T ss_pred EEEEEEECCCCCCCCCCCCCCCEEECCCEEECHHHHHCCCCCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8888864156788777243102255153552458861789786375556889887-407488999999999999988761
Q ss_pred HHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 9999973655699889-999999999999834997110000578973615999999999997
Q gi|254780615|r 390 QDIIAILGMDELSEED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 390 ~~~i~~~g~~~l~~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
||||++|.|..+||.+ |.+|+..++|++||+|..+. .++.|++++.++.|+
T Consensus 403 EdLiriG~Y~~GSd~e~D~AI~~~~~le~FL~Qg~~E----------~~~fE~s~~~L~~I~ 454 (455)
T TIGR01026 403 EDLIRIGAYKKGSDKELDKAIAKYPKLERFLKQGINE----------KVNFEESLQQLEEIL 454 (455)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----------CCHHHHHHHHHHHHC
T ss_conf 3231220255878866899985799988875479434----------630899999998734
No 8
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=1046.31 Aligned_cols=458 Identities=72% Similarity=1.112 Sum_probs=447.2
Q ss_pred CCEEEEEEECCEEEEEECC--CCCCCCCEEEECCCC-CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEE
Q ss_conf 4138999955789998166--652314189981699-5599999987089879999814878887888889779848988
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVN--SLPPIFSSLETSDKG-SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVP 85 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~--~~~~i~~~i~~~~~g-~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~Vp 85 (478)
+.|+|++|+|+|++|+|++ .+|.+++.+.+.... .++.+||.++++++.|+++++++++|+.+|+.|..||++++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCCEEEEEEEEEEEEEECCCCCCCHHHHHHEECCCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCCEEEE
T ss_conf 87569999821799980586667204345264357752575306877388838999963756710374775079966875
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCH--HHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 59237655887875230167875300--1100234544410000134200023110023557021541003675666624
Q gi|254780615|r 86 VGEATLGRIMNVIGEPVDDQGAIISS--EKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 86 VG~~lLGRViD~lG~PLDg~g~i~~~--~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
||++.||||+|.+|+|||+.+|+... ++||||+++|...+..+.+|+|+||||+||.|+|+.||+|+|+|||+|||||
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT 161 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 161 (468)
T ss_pred CCHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCE
T ss_conf 26322123102047734666888755550201257998355407730443307368998411146864444236775620
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r 164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 (478)
Q Consensus 164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ 243 (478)
++++++|+|+++.|++++||+++|||+||++|+|+||+++++ +++|++|++||||||++|+|++++|+
T Consensus 162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~v------------l~ktalv~gQMNEpPGaR~RValtGl 229 (468)
T COG0055 162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV------------LDKTALVFGQMNEPPGARMRVALTGL 229 (468)
T ss_pred EEHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCC------------CCCEEEEEEECCCCCCCEEEEHHHHH
T ss_conf 109999999999749868997135321115778999986388------------77326999605799864145511233
Q ss_pred HHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
Q ss_conf 768999866-9967999715599987601245531144101101223566657888763177765325666543047664
Q gi|254780615|r 244 TVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDL 322 (478)
Q Consensus 244 tiAEyfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~ 322 (478)
||||||||+ |+|||||+||++||.||++|+|.+|||+||+.||||++.++++.|+||+.++++||||++++||+|+||+
T Consensus 230 T~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~GSITSiQavyvPaDDl 309 (468)
T COG0055 230 TMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDL 309 (468)
T ss_pred HHHHHHHCCCCCEEEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 19998640038758998425567762313899984569641456740677888899997537888668899998613237
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
|||.|.++|+|||+++||||++|++|+|||||||.|.||.++|.++|++||++|++++.+|++|+||||+|+|+|+|+||
T Consensus 310 TDPapattFaHLDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELs 389 (468)
T COG0055 310 TDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELS 389 (468)
T ss_pred CCCCHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf 89525556551344135637678668876658443422015864145899999999999999989999999983832128
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCC
Q ss_conf 8899999999999998349971100005789736159999999999976764468978976418999998877439
Q gi|254780615|r 403 EEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478 (478)
Q Consensus 403 ~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~~~~ 478 (478)
++||+.++|+|+|++||+|||||||.|||.||+||+++||+++|++||+|+|||+||++|||+|+|||+.+|++.+
T Consensus 390 eedk~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE~aF~~vG~i~e~~eka~~~ 465 (468)
T COG0055 390 EEDKLTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQAFYMVGSIEEAVEKAKKL 465 (468)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHC
T ss_conf 6678999999999998558620121004899616448999999999847876669888973117489999998740
No 9
>TIGR00962 atpA ATP synthase F1, alpha subunit; InterPro: IPR005294 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the alpha subunit found in the F1 complex of F-ATPases. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha-subunit contains a highly conserved adenine-specific non-catalytic nucleotide-binding domain, with a conserved amino acid sequence of Gly-X-X-X-X-Gly-Lys. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=1002.07 Aligned_cols=427 Identities=25% Similarity=0.372 Sum_probs=401.7
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
....+.+++|+|++|.++|++|+|+++. +..++..+.+| ..+++.||++++|+++.||+-.+|+.|+.|.+||+.
T Consensus 19 ~~~~~~~evG~V~sVgDGiArv~GL~~v--m~~El~eF~~G---~~GiAlNLEedsVG~vi~Gd~~~i~EG~~VKRTg~i 93 (520)
T TIGR00962 19 EKDIEVEEVGTVVSVGDGIARVYGLENV--MSGELVEFEGG---VQGIALNLEEDSVGAVILGDYSNIREGSTVKRTGRI 93 (520)
T ss_pred CCEEEEECCCEEEEECCCEEEEEECHHH--HHCCEEECCCC---CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 5101330362799833878999601101--40100255789---589999713586248997886665326503203200
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||++|||||||+||+||||||||..+++++|+.+||..++|++++|||+|||||||+|+|||||||++|+||++||
T Consensus 94 l~vPVG~~llGRvVn~LG~PiDGkGpI~~~~~~~~E~~APGv~~RkSV~ePlQTGIkAIDAliPIGRGQRELIIGDRqTG 173 (520)
T TIGR00962 94 LKVPVGDGLLGRVVNALGQPIDGKGPIESDEFRPIEKIAPGVIERKSVHEPLQTGIKAIDALIPIGRGQRELIIGDRQTG 173 (520)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 03245756883268457786577776776663432145885521466787300005576414689876222342326667
Q ss_pred HHHHHHHHHHHHHHC-------CCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 248999999988505-------7885268762164345999999854244200122234443323169997176689678
Q gi|254780615|r 162 KTVLIMELINNVAKA-------HGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGA 234 (478)
Q Consensus 162 KT~l~~~~i~n~~~~-------~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~ 234 (478)
||+++.|+|.||+.+ ++.+||||+||||...|..+++.|. ..++|++|+||+|+++||+.+
T Consensus 174 KTavAIDtIiNQk~~~~~~~~~~dv~CvYVAIGQK~StvA~vv~~LE------------~~GAM~YTiVV~A~ASdsA~l 241 (520)
T TIGR00962 174 KTAVAIDTIINQKDSGELGDEKKDVYCVYVAIGQKASTVAQVVRKLE------------EHGAMDYTIVVAASASDSASL 241 (520)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHH------------HCCCCCCCEEEEECCCCCHHH
T ss_conf 30565577773057765678655648999620753568999999975------------348711103367416772124
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC----------
Q ss_conf 7777777877689998669967999715599987601245531144101101223566657888763177----------
Q gi|254780615|r 235 RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT---------- 304 (478)
Q Consensus 235 r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~---------- 304 (478)
+|.|||+||||||||||+|||||++|||||+||.|||+|||||+|||||++|||||||+||||||||++.
T Consensus 242 qYLAPY~G~tmaEyF~d~GkhaLIiYDDLSKqA~AYR~iSLLLRRPPGREAyPGDVFYLHSRLLERAAKLsdeYve~Ftk 321 (520)
T TIGR00962 242 QYLAPYTGCTMAEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEYVEKFTK 321 (520)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 54206889999999986597379997474078999999998718865871699740145456899986407888854305
Q ss_pred ----CC-CCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHH
Q ss_conf ----76-5325666543047664410589999750342564115663188675322355431116201289999999999
Q gi|254780615|r 305 ----LK-GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRV 379 (478)
Q Consensus 305 ----~~-GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~ 379 (478)
++ |||||||+|+|+|+|+|+|||||++|||||||||+.+||++|++||||++.|||||- ...+-|.++++|+.+
T Consensus 322 GevkGgtGSlTALPIIETQAGDvSAYIPTNVISITDGQIFLesdLFn~GiRPAINvGlSVSRVG-gAAQiKAmK~vaG~L 400 (520)
T TIGR00962 322 GEVKGGTGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVG-GAAQIKAMKQVAGSL 400 (520)
T ss_pred CCCCCCCCCCCCCCCEEECCCCEEEECCCCEEECCCCHHHHHHHHHCCCCCCCEECCEEEEECC-HHHHHHHHHHHCCCH
T ss_conf 6324665352367722521487866307871352455112102011068987141756674420-357766555423522
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999989989999997365569988999999999999983499711000057897361599999999999767644689
Q gi|254780615|r 380 QEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLP 458 (478)
Q Consensus 380 r~~l~~y~el~~~i~~~g~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~p 458 (478)
|..||||+|||.|.+| |+| ||+++|+.|+||.|+.+.||||.+ ++.|+++|+..++++..|.+|++|
T Consensus 401 rLeLAQYRELeAFsQF-aSD-LD~ATk~qLerG~R~vElLKQ~~~----------~P~pV~~Q~v~~yA~~~GyLd~iP 467 (520)
T TIGR00962 401 RLELAQYRELEAFSQF-ASD-LDEATKAQLERGKRLVELLKQPQY----------KPLPVEEQVVILYAGTKGYLDDIP 467 (520)
T ss_pred HHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHCCCCEEEEEECCCC----------CCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 4557548899888640-122-348999998606723420006886----------588599999999998614546434
No 10
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=973.35 Aligned_cols=421 Identities=28% Similarity=0.435 Sum_probs=399.5
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r 4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
....+..|||++|.|.++++.|+++.+|..|.+...+++..+.+|||+|. ++.+.+|||++++||++|++|.++|++++
T Consensus 18 ~~~~~~~Grv~~v~G~~iea~~~~~~iG~~c~i~~~~~~~~~~aEVVgf~-~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~ 96 (439)
T PRK06936 18 SRLIQIRGRVTQVTGTILKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFA-QHQALLTPLGEMYGISSNTEVSPTGTMHQ 96 (439)
T ss_pred CCEEEEEEEEEEEEEEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEEEE-CCEEEEEECCCCCCCCCCCEEEECCCCCE
T ss_conf 98577887999999658999847999788689982899834899999883-89899996778667899999997899867
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 88592376558878752301678753001100234544410000134200023110023557021541003675666624
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
||||++|||||+|++|+||||++++...++||++++||||++|.++++||+||||+||+|+|||||||+|||||+|||||
T Consensus 97 vpvG~~lLGRV~D~~G~PlDg~~~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~llt~g~GQR~gIfagsGvGKs 176 (439)
T PRK06936 97 VGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS 176 (439)
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHCCCEEECCCCCCCCHH
T ss_conf 77570422888888887558999998787620458897842026878742268555524686310570102369999889
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r 164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 (478)
Q Consensus 164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ 243 (478)
+|+.|+++| .++|+|||++||||+|||+||+++.. +.++++||++|++|||+||++|+++||+|+
T Consensus 177 ~Ll~~i~r~---~~adv~V~alIGERgrEv~efie~~l------------~~~gl~rsvvV~atsd~p~~~R~~aa~~a~ 241 (439)
T PRK06936 177 TLLASLIRS---AEVDVTVLALIGERGREVREFIESDL------------GEEGLRKAVLVVATSDRPSMERAKAGFVAT 241 (439)
T ss_pred HHHHHHHHH---HCCCCEEEEEECCCHHHHHHHHHHHH------------HCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999764---32695799980730899999999864------------125431069996189899899999998877
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 76899986699679997155999876012455311441011012235666578887631777653256665430476644
Q gi|254780615|r 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLT 323 (478)
Q Consensus 244 tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~ 323 (478)
|+|||||||||||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||++++||||+||||++|+||+|
T Consensus 242 aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~gepP~~~GYppsvf~~l~~l~ERag~~~~GSITa~~tVl~~gdD~~ 321 (439)
T PRK06936 242 SIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVEGDDMT 321 (439)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCC
T ss_conf 88999985898489993567899999989998668999876779509988788887255899974576544550488777
Q ss_pred CHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 10589999750342564115663188675322355431116201289999999999999998998999999736556998
Q gi|254780615|r 324 DPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE 403 (478)
Q Consensus 324 dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~ 403 (478)
|||||+++|||||||||||+||++||||||||+.|+||+|+ ++++++|+++|+++|++|++|+|+||+|++|+|.+++|
T Consensus 322 dPi~d~~~silDGhivLsR~la~~g~yPAIDvl~S~SRvm~-~v~~~~h~~~a~~~r~~la~y~e~edli~iG~y~~G~d 400 (439)
T PRK06936 322 EPVADETRSILDGHIILSRKLAAANHYPAIDVLASASRVMN-QIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQD 400 (439)
T ss_pred CCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77156566662606998487886699998187404544452-12269999999999999998999999998548657999
Q ss_pred -HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf -899999999999998349971100005789736159999999999976
Q gi|254780615|r 404 -EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 404 -~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
+.|.+++++++|++||+|++++.. +++||++.+++|++
T Consensus 401 ~~~D~ai~~~~~i~~FL~Q~~~e~~----------~~~et~~~L~~l~~ 439 (439)
T PRK06936 401 KEADQAIERIGAIRGFLRQGTHELS----------HFNETLNLLETLTQ 439 (439)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC----------CHHHHHHHHHHHHC
T ss_conf 8899999868999998089999984----------99999999999749
No 11
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=970.85 Aligned_cols=423 Identities=26% Similarity=0.425 Sum_probs=398.3
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCC--CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 76456534138999955789998166652314189981699--5599999987089879999814878887888889779
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKG--SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTG 79 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g--~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg 79 (478)
...+++...|||++|.|.++|+.|+...+|..|.+...+.. ..+.+|||+| +++.+.+|||++++||.+|++|.++|
T Consensus 20 ~~~~~p~~~GrV~~v~G~~ie~~G~~~~iG~~c~i~~~~~~~~~~v~aEVVgf-~~~~v~l~p~g~~~Gi~~G~~V~~~g 98 (451)
T PRK05688 20 SLPAQPVVEGRLLRMVGLTLEAEGLRAAVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVYLMPVGSVAGIAPGARVVPLA 98 (451)
T ss_pred CCCCCCEEEEEEEEEECEEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECC
T ss_conf 77677700369999967499998258874784799868988775468999225-49979999887877889999999689
Q ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 84898859237655887875230167875300110023454441000013420002311002355702154100367566
Q gi|254780615|r 80 TQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAG 159 (478)
Q Consensus 80 ~~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~G 159 (478)
++++||||++|||||+|++|+||||+|++...+++|+++++|||++|.++++||+||||+||+|+|||||||+|||||+|
T Consensus 99 ~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~~~~~p~~~~~p~pl~R~~i~epl~TGIraID~l~pigrGQR~gIfggsG 178 (451)
T PRK05688 99 DTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRDPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG 178 (451)
T ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCEECCCEEEECCCCCCCCCEEEECCCCC
T ss_conf 98777758253588888776426899998987345566899883551787862003846884546724675642104889
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 66248999999988505788526876216434599999985424420012223444332316999717668967877777
Q gi|254780615|r 160 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239 (478)
Q Consensus 160 vGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~ 239 (478)
||||+|+.||+++ .++|+|||++||||+|||+|||+++. +.++++||++|++|||+||++|+++|
T Consensus 179 vGKS~Ll~~i~r~---~~adv~Vi~lIGERgrEv~efi~~~l------------~~~~~~~svvV~atsd~~p~~r~~a~ 243 (451)
T PRK05688 179 VGKSVLLGMMTRF---TEADIIVVGLIGERGREVKEFIEHIL------------GEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CCHHHHHHHHHHH---HCCCEEEEEEEEEEHHHHHHHHHHHH------------HCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 8689999999885---27986999961277599999999985------------15674305898338889879999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCC--CCEEEEEEEEE
Q ss_conf 7787768999866996799971559998760124553114410110122356665788876317776--53256665430
Q gi|254780615|r 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK--GSITSVQAIYV 317 (478)
Q Consensus 240 ~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~--GSIT~~~tV~~ 317 (478)
|+|+||||||||||||||++|||+||||+|+|||||++||||+++|||||+|++||+|+||||+... ||||+||||++
T Consensus 244 ~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~g~GSITal~tVlv 323 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLS 323 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEC
T ss_conf 87655899998679825999705577788888899875899876687844887737888641379999922016467750
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
|+||+|||||||++|||||||||||+||++|||||||++.|+||+| +++++++|+++|+++|++|++|+|+||+|++++
T Consensus 324 ~gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm-~~i~~~~h~~~a~~~r~~la~Y~e~~dLi~~g~ 402 (451)
T PRK05688 324 EGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM-PQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGA 402 (451)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3887677733445655062599848788669999828752665423-333129999999999999998688899999858
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 556998-899999999999998349971100005789736159999999999976
Q gi|254780615|r 398 MDELSE-EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 398 ~~~l~~-~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
|.+++| +.|.+++++++|++||+||++ ..++++|+++.+..|..
T Consensus 403 y~~g~d~~~d~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~a 447 (451)
T PRK05688 403 YVAGGDPETDLAIARQPHLVQFLRQGLR----------ENVSLAESREQLAALFA 447 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 4569999999999869999998189999----------99599999999999847
No 12
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=965.75 Aligned_cols=424 Identities=26% Similarity=0.428 Sum_probs=402.1
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECC-CCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 64565341389999557899981666523141899816-99559999998708987999981487888788888977984
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSD-KGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~-~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
.....+.+|||++|.|.++++.|+++..|..|.+...+ ++..+.+|||+| +++.+.+|||++++||+.|++|+.+|++
T Consensus 10 ~~~~~~~~GrV~~I~G~lIea~g~~~~iGelc~I~~~~~~g~~i~aEVVgf-~~~~v~l~p~~~~~GI~~G~~V~~~g~~ 88 (435)
T PRK07721 10 TLDPYKRYGKVKRVIGLMIESKGPESSIGDVCYIHTKGKGGKKIKAEVVGF-KDENILLMPYLEAANIAPGSLVEATGEP 88 (435)
T ss_pred CCCCCCCCEEEEEEECEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 279752312899998638999957888434179996479997899999987-6988999987688899999999958997
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||++|||||+|++|+||||++++.....||++++||||++|.++++||+||||+||+|+|||||||+|||||+|+|
T Consensus 89 ~~vpvg~~lLGRV~d~lG~PiDg~~~~~~~~~~~i~~~~pnp~~R~~i~e~l~TGIraID~l~tigkGQRigIf~gsGvG 168 (435)
T PRK07721 89 LRVKVGSGLIGQVVDAFGEPLDGSALPKGLAPVSTDQSPPNPMKRPPIREKMEVGVRAIDSLLTVGKGQRVGIFAGSGVG 168 (435)
T ss_pred CEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCC
T ss_conf 66772753224510456543589888887653525589978501479886303785652264760357541002689987
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+.||++| .++|+|||++||||+||++||+++.. ++++++||++|++|||+||++|+++||+
T Consensus 169 Ks~Ll~~iar~---~~adv~V~~liGeR~rEv~efie~~l------------~~~~l~rsvvv~atsd~p~~~R~~a~~~ 233 (435)
T PRK07721 169 KSTLMGMIARQ---TSADLNVIALIGERGREVREFIERDL------------GEEGLKRSIVVVATSDQPALMRIKGAYT 233 (435)
T ss_pred HHHHHHHHHHH---HCCCEEEEEEECCCHHHHHHHHHHHH------------CCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 89999999887---44882589993320289999999752------------2155532399994388999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC
Q ss_conf 87768999866996799971559998760124553114410110122356665788876317776532566654304766
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADD 321 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD 321 (478)
|+|+||||||||+||||+|||+||||+|+||||+++||||+++|||||+|++||+|+||||+.++||||+||||++|+||
T Consensus 234 a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~~~GSIT~i~~V~~~gdD 313 (435)
T PRK07721 234 ATAIAEYFRDKGQNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNESGTITAFYTVLVDGDD 313 (435)
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC
T ss_conf 88899999967997899516388999999999985489998667784599887888885137999745777545047986
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 44105899997503425641156631886753223554311162012899999999999999989989999997365569
Q gi|254780615|r 322 LTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDEL 401 (478)
Q Consensus 322 ~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l 401 (478)
+||||||+++|||||||||||+||++||||||||+.|+||+|+ ++++++|+++|+++|++|++|+|+||+|++++|.++
T Consensus 314 ~~dPi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~-~i~~~~h~~~a~~~r~~la~y~e~~~li~~g~y~~g 392 (435)
T PRK07721 314 MNEPIADTVRGILDGHFVLDRALANKGQFPAVNVLKSISRVMS-NIATKEHKEAANRFRELLSTYQNSEDLINIGAYKRG 392 (435)
T ss_pred CCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6677168787771617998688986699998088616654322-230299999999999999988999999997487679
Q ss_pred CHHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCC
Q ss_conf 9889-999999999999834997110000578973615999999999997676
Q gi|254780615|r 402 SEED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGE 453 (478)
Q Consensus 402 ~~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~ 453 (478)
+|++ |.++.++++|++||+|+++. ..+++||++.+|+|+.++
T Consensus 393 ~d~~~D~ai~~~~~i~~fL~Q~~~e----------~~~~~~~~~~l~~l~~~~ 435 (435)
T PRK07721 393 SSREIDEAIQFYPQLISFLKQEVDE----------KATLEESIQALKQLTGRE 435 (435)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC----------CCCHHHHHHHHHHHHCCC
T ss_conf 9988999998689999984899999----------989999999999986779
No 13
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=961.51 Aligned_cols=418 Identities=27% Similarity=0.448 Sum_probs=393.8
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 56534138999955789998166652314189981699559999998708987999981487888788888977984898
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV 84 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V 84 (478)
.++...|||++|.|.++|+.|+...+|..|.+... +..+.+|||+| +++.+.+|||+++.||++|++|.+||++++|
T Consensus 19 ~~~~~sGrv~~v~G~~ie~~g~~~~iG~~c~i~~~--~g~~~aEVvgf-~~~~~~l~p~~~~~Gi~~G~~V~~tg~~~~V 95 (440)
T PRK08972 19 FRAVASGQLVRVVGLTLEATGCRAPVGSLCSIETM--AGELEAEVVGF-DGDLLYLMPIEELRGVLPGARVTPLGEQSGL 95 (440)
T ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEECC--CCCEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCEE
T ss_conf 89866048999982589998168987887899849--98289999998-2997999988888888999999978998678
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHH
Q ss_conf 85923765588787523016787530011002345444100001342000231100235570215410036756666248
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTV 164 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~ 164 (478)
|||++|||||+|++|+||||+|++....+||++++||||++|.++++||+||||+||+|+|||||||+|||||+|||||+
T Consensus 96 pVG~~lLGRVvD~lG~PiDg~g~~~~~~~~~i~~~~~~pl~R~~i~epl~TGIkaID~l~pigrGQRigIf~gsGvGKS~ 175 (440)
T PRK08972 96 PVGMSLLGRVLDGNGNPLDGLGPIYTDQRAPRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSV 175 (440)
T ss_pred ECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHH
T ss_conf 84813118875788663589999999852131379978210377786101583456343671246466631578975899
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999998850578852687621643459999998542442001222344433231699971766896787777777877
Q gi|254780615|r 165 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244 (478)
Q Consensus 165 l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~t 244 (478)
|+.|+++| .++|++||++||||+|||+||++++. ++++++||++|++|||+||++|+++||+|+|
T Consensus 176 Ll~~i~r~---~~advvVi~lIGERgrEv~efie~~l------------~~~~~~rsvvV~atsd~~p~~R~~a~~~A~t 240 (440)
T PRK08972 176 LLGMMTRG---TTADVIVVGLVGERGREVKEFIEEIL------------GEEGRARSVVVAAPADTSPLMRLKGCETATR 240 (440)
T ss_pred HHHHHHHC---CCCCEEEEEEECEEHHHHHHHHHHHH------------CCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99888751---47878999862313699999999985------------0477447899970488886889999999998
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCC
Q ss_conf 68999866996799971559998760124553114410110122356665788876317--7765325666543047664
Q gi|254780615|r 245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT--TLKGSITSVQAIYVPADDL 322 (478)
Q Consensus 245 iAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~--~~~GSIT~~~tV~~~~dD~ 322 (478)
|||||||+|+||||+|||+||||+|+||||+++||||+++|||||+|++||+|+||||+ .++||||+||||++|+||+
T Consensus 241 iAEyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~~~GSITa~~tVlv~gdD~ 320 (440)
T PRK08972 241 IAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDL 320 (440)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC
T ss_conf 89999967997799963556777888789987489987667764277773688875226899976588856663158866
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
||||||+++|||||||||||+||++||||||||+.|+||+| +++++++|+++++++|.+|++|+|+||+|++++|.+++
T Consensus 321 ~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRvm-~~i~~~~h~~~a~~~r~~la~y~e~~dli~~g~y~~g~ 399 (440)
T PRK08972 321 QDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYAQGS 399 (440)
T ss_pred CCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78724544655350799848798669998758750665527-41068999999999999999888899999975966899
Q ss_pred HHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 889-9999999999998349971100005789736159999999999976
Q gi|254780615|r 403 EED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 403 ~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
|++ |.+++++++|++||+|+++ ..++++++++.++.|..
T Consensus 400 d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~~ 439 (440)
T PRK08972 400 DPRIDNAIRLQPAMNAFLQQTMK----------EAVPYDDSVNMLKQLAA 439 (440)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 98999999868999998389999----------99799999999999863
No 14
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=963.17 Aligned_cols=420 Identities=32% Similarity=0.503 Sum_probs=397.5
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 56534138999955789998166652314189981699559999998708987999981487888788888977984898
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV 84 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V 84 (478)
......|+|++|.|.++|+.|+....|..|.+..........+|||+|. ++.+.+|||++..|+.+|++|.++++++++
T Consensus 20 ~~~~~~G~v~~v~G~~lea~g~~~~iGelc~i~~~~~~~~~~aEVvgf~-~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v 98 (441)
T COG1157 20 DPYKRRGRLTRVTGLLLEAVGPQARIGELCKIERSRGSEKVLAEVVGFN-EERVLLMPFEPVEGVSPGAEVVPTGRPLSV 98 (441)
T ss_pred CCCEEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEC-CCEEEEECCCCCCCCCCCCEEEECCCCCCC
T ss_conf 7616987899985249998448876235699996588874147999972-876899626765567788789745975423
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHH
Q ss_conf 85923765588787523016787530011002345444100001342000231100235570215410036756666248
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTV 164 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~ 164 (478)
|+|++|||||+|++|+||||++++....++|+..+||||+.|.+|+++|.||||+||+|+|||+|||+|||+||||||||
T Consensus 99 ~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKSt 178 (441)
T COG1157 99 PVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKST 178 (441)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHH
T ss_conf 66866654100668885778999987632314579978210265466454561444010022467467887169986899
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999998850578852687621643459999998542442001222344433231699971766896787777777877
Q gi|254780615|r 165 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244 (478)
Q Consensus 165 l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~t 244 (478)
||.||++| ..+|++|+++||||||||+||+++ .+++++++|||+|+||||+||.+|.+++++|+|
T Consensus 179 LLgMiar~---t~aDv~ViaLIGERGREVrEFIE~------------~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~ 243 (441)
T COG1157 179 LLGMIARN---TEADVNVIALIGERGREVREFIEK------------DLGEEGLKRSVVVVATSDESALMRLKAAFTATT 243 (441)
T ss_pred HHHHHHCC---CCCCEEEEEEEECCCHHHHHHHHH------------HCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999624---669879999760664059999998------------602330352699997898898999888999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 68999866996799971559998760124553114410110122356665788876317776532566654304766441
Q gi|254780615|r 245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 245 iAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~d 324 (478)
||||||||||||||+|||+||||+|+|||+|++||||+++|||||+|+.+|+|+||+|++.+||||+|||||++|||++|
T Consensus 244 IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITafYTVLveGDD~~d 323 (441)
T COG1157 244 IAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITAFYTVLVEGDDMND 323 (441)
T ss_pred HHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCC
T ss_conf 99999867985999961388999999888875289986689895598874898860489999817899999850688888
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 05899997503425641156631886753223554311162012899999999999999989989999997365569988
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEE 404 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~ 404 (478)
||+|+++|||||||||||+||++||||||||+.|+||+|. ++++++|++.|+++|++|++|+|+||+|++|+|.+++|.
T Consensus 324 PiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~-~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~~G~D~ 402 (441)
T COG1157 324 PIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMP-QIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQKGSDP 402 (441)
T ss_pred CHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 5045666422652897386885599997446777877766-408999999999999999998877899986385678987
Q ss_pred -HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf -99999999999998349971100005789736159999999999976
Q gi|254780615|r 405 -DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 405 -~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
.|.++++.++|++||+|+.+.. .+.++|++.++.++.
T Consensus 403 ~~D~Ai~~~p~i~~fL~Q~~~e~----------~~~~~t~~~L~~~~~ 440 (441)
T COG1157 403 ELDKAIKLYPKIEQFLKQGIDEK----------SSFEETLEQLEAILS 440 (441)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCC----------CCHHHHHHHHHHHHC
T ss_conf 88999975099999971895445----------799999999998752
No 15
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=960.10 Aligned_cols=424 Identities=26% Similarity=0.415 Sum_probs=394.1
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEEC-CCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 6456534138999955789998166652314189981-699559999998708987999981487888788888977984
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETS-DKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~-~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
.....+.+|||++|.|+++++.|+....++++.|.+. .++..+.+||++|. ++.+.+|+|++++||++|++|.++|++
T Consensus 11 ~~~~~~~~GrV~~V~G~~vev~g~~~~~~iG~~c~I~~~~g~~i~aEVvgf~-~~~~~l~~~~~t~Gi~~G~~V~~tg~~ 89 (441)
T PRK08927 11 DIDGVNIYGRVVGVRGLLVEVAGPIHAMSVGARIVVETGDGREIPCEVIGFR-GDRALLMPFGPLEGVRRGCRAVIANAA 89 (441)
T ss_pred CCCCEEEEEEEEEEECEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 4897157789999977089998057777758889999089988999999885-987999988887788999999989999
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCC-CHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 8988592376558878752301678753-001100234544410000134200023110023557021541003675666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAII-SSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~-~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478)
++||||++|||||+|++|+||||+||+. ...+||++++||||++|.+++++|+||||+||+|+|||||||+|||||+||
T Consensus 90 ~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQRigIfagsGv 169 (441)
T PRK08927 90 AQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGPPLDLGVRALNTFLTCCRGQRLGIFAGSGV 169 (441)
T ss_pred CEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 87777866428787767111589998888760040247896846617777631036015653300203646663168999
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 62489999999885057885268762164345999999854244200122234443323169997176689678777777
Q gi|254780615|r 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 (478)
Q Consensus 161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~ 240 (478)
|||+|+.|+++| .++|+|||++||||+|||+||++++. ++++++||++|++|||+||++|+++||
T Consensus 170 GKs~Ll~~i~r~---~~adv~VialIGeRgrEv~efi~~~l------------~~~~l~rsvvV~atsd~p~~~R~~a~~ 234 (441)
T PRK08927 170 GKSVLLSMLARN---TDADVSVIGLIGERGREVQEFLQDDL------------GPEGLARSVVVVATSDEPALMRRQAAY 234 (441)
T ss_pred CHHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHHHH------------CCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 878999999864---16773787522651899999999872------------024522458999637898788799998
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEECC
Q ss_conf 787768999866996799971559998760124553114410110122356665788876317-7765325666543047
Q gi|254780615|r 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT-TLKGSITSVQAIYVPA 319 (478)
Q Consensus 241 ~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~-~~~GSIT~~~tV~~~~ 319 (478)
+|+|+|||||||||||||+|||+||||+|+||||+++||||+++|||||+|++||+|+||||+ .++||||+||||++|+
T Consensus 235 ~A~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~~~~GSIT~~~tVl~~g 314 (441)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGLGEGTITGLFTVLVDG 314 (441)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEEECC
T ss_conf 75589999997799679983460288899999997558999877878617877178887613578995030303576127
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66441058999975034256411566318867532235543111620128999999999999999899899999973655
Q gi|254780615|r 320 DDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMD 399 (478)
Q Consensus 320 dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~ 399 (478)
||+||||||+++|||||||||||+||++||||||||+.|+||+| +++++++|+++++++|++|++|+|+||+|++++|.
T Consensus 315 dD~~dPi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~-~~~~~~~h~~~a~~~r~~la~y~e~edli~~G~y~ 393 (441)
T PRK08927 315 DDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTM-PGCNDPAELPLVRRARQLMATYADMEELIRLGAYR 393 (441)
T ss_pred CCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87678724544656364799968798669999808762564424-00027999999999999999888999999973864
Q ss_pred CCCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCC
Q ss_conf 69988-9999999999999834997110000578973615999999999997676
Q gi|254780615|r 400 ELSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGE 453 (478)
Q Consensus 400 ~l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~ 453 (478)
+++|+ .|.+++++++|++||+|+++ +..+++|+++.+++++.|.
T Consensus 394 ~g~d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~e~~~~L~~~~~g~ 438 (441)
T PRK08927 394 AGSDPEVDEAIRLHPPLEAFLRQGKD----------EATSLAEGYAQLAQILGGP 438 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCC
T ss_conf 79998999999867999998489988----------9989999999999986787
No 16
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=958.85 Aligned_cols=422 Identities=29% Similarity=0.455 Sum_probs=396.9
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEE
Q ss_conf 64565341389999557899981666523141899816995599999987089879999814878887888889779848
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQI 82 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l 82 (478)
.....+.+|||++|.|.++++.+++..+|..|.+... ++..+.+|||+| +++.+.+|||+++.||.+|++|.++|+++
T Consensus 17 ~~~~~~~~GrV~~v~G~~ie~~g~~~~iGelc~I~~~-~~~~~~aEVVgf-~~~~~~l~p~~~~~Gi~~G~~V~~~g~~~ 94 (442)
T PRK06315 17 DVQLTTVVGRITEVVGMLIKAVVPDVRVGEVCLVKRH-GMEPLVTEVVGF-TQNFVFLSPLGELTGVSPSSEVIPTGLPL 94 (442)
T ss_pred CCCCCEEEEEEEEEEEEEEEEEECCCCCCCEEEEEEC-CCCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCC
T ss_conf 3886213579999997899998678986786899918-997788999998-49979999877876789999999689987
Q ss_pred EEECCHHHHHHHHHHHHHHCCC--CCCC-CCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 9885923765588787523016--7875-300110023454441000013420002311002355702154100367566
Q gi|254780615|r 83 TVPVGEATLGRIMNVIGEPVDD--QGAI-ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAG 159 (478)
Q Consensus 83 ~VpVG~~lLGRViD~lG~PLDg--~g~i-~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~G 159 (478)
+||||++|||||+|++|+|||| +||+ ...++||++++||||++|.++++||+||||+||+|+|||||||+|||||+|
T Consensus 95 ~vpvg~~lLGRViD~~G~PiDg~~~gp~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~llpig~GQR~gIfagsG 174 (442)
T PRK06315 95 HIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAG 174 (442)
T ss_pred EEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCC
T ss_conf 78727151378888887766787778876776311324789693430787875336853001127702377764038999
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 66248999999988505788526876216434599999985424420012223444332316999717668967877777
Q gi|254780615|r 160 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239 (478)
Q Consensus 160 vGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~ 239 (478)
||||+|+.|+++|.+ ++|++||++||||+||++||++++. ++++++||++|++|||+||++|+++|
T Consensus 175 vGKs~Ll~~i~~~~~--~adv~V~~lIGeRgrEv~efie~~~------------~~~~l~rsvvV~atsd~p~~~R~~a~ 240 (442)
T PRK06315 175 VGKSSLLGMIARNAE--EADVNVIALIGERGREVREFIEGDL------------GEEGMKRSVIVVSTSDQSSQLRLNAA 240 (442)
T ss_pred CCHHHHHHHHHHHHC--CCCCEEEEEECCCCHHHHHHHHHHH------------CCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 988899999997440--3893499995511379999999752------------01452133999617999878875558
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC
Q ss_conf 77877689998669967999715599987601245531144101101223566657888763177765325666543047
Q gi|254780615|r 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPA 319 (478)
Q Consensus 240 ~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~ 319 (478)
|+|+|+|||||||||||||+|||+||||+|+||||+++||||+++|||||+|++||+|+||||++++||||+||||++|+
T Consensus 241 ~~A~aiAEyFrd~G~~VLl~~DslTR~A~A~REi~l~~gepP~~~GYppsvf~~l~~l~ERag~~~~GSITa~~tVl~~g 320 (442)
T PRK06315 241 YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAG 320 (442)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
T ss_conf 87778999998689948999437028888999999755899987786833998878888722488997456533465158
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66441058999975034256411566318867532235543111620128999999999999999899899999973655
Q gi|254780615|r 320 DDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMD 399 (478)
Q Consensus 320 dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~ 399 (478)
||+||||||+++|||||||||||+||++||||||||+.|+||+|+ ++++++|+++|+++|++|++|+|+||+|++|+|+
T Consensus 321 dD~~dPi~d~~~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~-~v~~~~h~~~a~~~r~~la~y~e~edli~iG~y~ 399 (442)
T PRK06315 321 DDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLT-AIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYR 399 (442)
T ss_pred CCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 876787367778760616998587986699997187504533661-1057999999999999999889999999962987
Q ss_pred CCCH-HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 6998-899999999999998349971100005789736159999999999976
Q gi|254780615|r 400 ELSE-EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 400 ~l~~-~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
+++| +.|.+++++++|++||+|+++. ..+++++++.++.|+.
T Consensus 400 ~g~d~~~d~ai~~~~~i~~fL~Q~~~e----------~~~~~~~~~~l~~i~~ 442 (442)
T PRK06315 400 RGSDREVDFAIDHIDKLNRFLKQDIHE----------KTNYEEAAQQLRAIFR 442 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCC----------CCCHHHHHHHHHHHHC
T ss_conf 899988999999799999982899889----------9699999999999759
No 17
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=951.07 Aligned_cols=423 Identities=26% Similarity=0.427 Sum_probs=398.2
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
...+..+.+|||++|.|+++++.|+++..|..|.+...++.....+||++| +++.+.+|||++++||+.|++|.++|++
T Consensus 17 ~~~~~~~~~G~V~~v~g~~i~~~G~~a~iGelc~i~~~~g~~~~~aEVvgf-~~~~~~l~p~~~~~gi~~G~~V~~tg~~ 95 (441)
T PRK09099 17 AALAAVRRTGKVLEVIGTLLRVSGLDVTLGELCELRQRDGTLLQRAEVVGF-SRDVALLSPFGELGGLSRGTRVIGLGRP 95 (441)
T ss_pred HCCCCCEEEEEEEEEECCEEEEEECCCCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 047753046699999781999981788878869998489971102589998-6898999988786678899999978996
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||++|||||+|++|+||||+|++...++||++++||||++|.++++||+||||+||+|+|||||||+|||||+|+|
T Consensus 96 ~~VpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pigrGQR~gIf~gsGvG 175 (441)
T PRK09099 96 LSVPVGPALLGRVIDGLGEPIDGRGPLDCDTLVPVIAAPPDPMSRRMIEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVG 175 (441)
T ss_pred CEEECCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCC
T ss_conf 37874704148885677655689978887658875167988200257787412785622366780347633001589887
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+.|+++| .++|++||++||||+||++||++++. +.++++||++|++|||+||++|+++||+
T Consensus 176 KstLl~~iar~---~~~dv~V~~lIGeRgrEv~efi~~~~------------~~~~l~~svvv~atsd~~~~~R~~a~~~ 240 (441)
T PRK09099 176 KSTLMGMFARG---TQCDVNVIALIGERGREVREFIELIL------------GEDGMARSVVVCATSDRSSIERAKAAYA 240 (441)
T ss_pred HHHHHHHHHHH---HCCCCEEEEECCCCHHHHHHHHHHHH------------HCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 89999989875---13686168863721389999999976------------2456320179861588998899998775
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC
Q ss_conf 87768999866996799971559998760124553114410110122356665788876317776532566654304766
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADD 321 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD 321 (478)
|+|+||||||||||||++|||+||||+|+||||+++||||+++|||||+|+.||+|+||||++++||||+||||++|+||
T Consensus 241 a~aiAEyfrd~Gk~VLl~~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~l~ERag~~~~GSITai~tVl~~~dd 320 (441)
T PRK09099 241 ATAIAEYFRDRGKRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGEHGSITALYTVLAEDDS 320 (441)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC
T ss_conf 01578899866981899707677999999999986579998566772099887898874037899855344445506887
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 44105899997503425641156631886753223554311162012899999999999999989989999997365569
Q gi|254780615|r 322 LTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDEL 401 (478)
Q Consensus 322 ~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l 401 (478)
++|||||+++|||||||||||+||++||||||||+.|+||+| +++++++|+++++++|++|++|+|+|++|++|+|.++
T Consensus 321 ~~~pi~d~~~si~DGhivLsr~la~~g~yPAIdvl~SvSR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~li~~G~y~~G 399 (441)
T PRK09099 321 GSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM-PQVVPREHVQAAGRLRRLLAKHREVETLLQVGEYRAG 399 (441)
T ss_pred CCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 778767877767063899858788669998717741554244-3441599999999999999989999999973686689
Q ss_pred CHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 988-99999999999998349971100005789736159999999999976
Q gi|254780615|r 402 SEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 402 ~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
+|+ .|.+++++++|++||+|+.. ++++++++++.++++++
T Consensus 400 ~d~~~d~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~lv~ 440 (441)
T PRK09099 400 SDPVADEAIAKIDAIRDFLSQRTD----------ELSDPDATLAALAELVD 440 (441)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 897899999878999998389988----------99899999999999851
No 18
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=0 Score=947.06 Aligned_cols=418 Identities=27% Similarity=0.420 Sum_probs=391.1
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEE--EEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 534138999955789998166652314189981699559--999998708987999981487888788888977984898
Q gi|254780615|r 7 TESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRI--VFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV 84 (478)
Q Consensus 7 ~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i--~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V 84 (478)
.+.+|+|++|.|++|++.++++..|..|++........+ .+||++| +++.+.+|+|+++.||+.|++|.+||++++|
T Consensus 4 ~~~~g~v~rI~G~lIe~~~p~~~iGelc~I~~~~~~~~~~~~aEVvgf-~~~~~~l~~~~~t~Gi~~g~~V~~tg~~~~V 82 (427)
T PRK08149 4 LQRLAHPQRIQGPIIEAELPDVAIGELCEIRAGWHSKEVIARAQVVGF-QRERTILSLIGNAQGLSRQVVLYPTGRALSI 82 (427)
T ss_pred CCCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCEE
T ss_conf 110675899995699999789997887899806898614678889731-4977999978798888999999978995188
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCC---CCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 859237655887875230167875---30011002345444100001342000231100235570215410036756666
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVDDQGAI---ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLDg~g~i---~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
|||++|||||||++|+|||++++. ...+++|++++||||++|.+++++|+||||+||+|+|||||||+|||||+|||
T Consensus 83 ~VG~~lLGRV~d~lG~piD~l~~~~~~~~~~~~~i~~~pp~p~~R~~i~e~l~TGIraID~l~pigkGQR~gIf~gsGvG 162 (427)
T PRK08149 83 WVGPALLGAVLDPTGKIVERFAPPTVAPISELRPIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCG 162 (427)
T ss_pred ECCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCEEECCCCCCCCCCEEECCCCCCCC
T ss_conf 70751207977778888668898777765320304589968256078885000386431044532467540002789986
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+.||++| .++|++||++||||+||++||++++. +.++++||++|++|||+||++|+++||+
T Consensus 163 Ks~Ll~~i~~~---~~adv~Via~IGeRgrEv~efi~~~~------------~~~~l~rsvvv~atsd~p~~~R~~a~~~ 227 (427)
T PRK08149 163 KTMLMNMLIEH---TEADVFVIGLIGERGREVTEFVEMLR------------ASHKKEKCVLVYATSDFSSVDRCNAALV 227 (427)
T ss_pred HHHHHHHHHHH---CCCCEEEEEEECCCHHHHHHHHHHHH------------CCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 77999988863---58998999970233789999999750------------3685203689971588998999999988
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC
Q ss_conf 87768999866996799971559998760124553114410110122356665788876317776532566654304766
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADD 321 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD 321 (478)
|+|+||||||||||||++|||+||||+|+||||+++||||+++|||||+|++||+|+||||++++||||+||||++|+||
T Consensus 228 a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~GYp~svf~~l~~l~ERag~~~~GSIT~~~tV~~~~dD 307 (427)
T PRK08149 228 ATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATSAGSITAFYTVLLESEE 307 (427)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC
T ss_conf 77899999867983799617578888899899986479998768785299887898762346789855467568724888
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 44105899997503425641156631886753223554311162012899999999999999989989999997365569
Q gi|254780615|r 322 LTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDEL 401 (478)
Q Consensus 322 ~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l 401 (478)
+||||||+++|||||||||||+||++||||||||+.|+||+|+ ++++++|+++|+++|++|++|+|+||+|++|+|.++
T Consensus 308 ~tdPi~d~~~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~-~i~~~~h~~~a~~~r~~la~y~e~~~li~iG~y~~g 386 (427)
T PRK08149 308 EADPIGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFG-QVTDPKHRELAAAFRKLLTRLEELQLFIDLGEYRPG 386 (427)
T ss_pred CCCCHHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7876466555500636999676886599998187515543644-442599999999999999999999999984787679
Q ss_pred CH-HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 98-899999999999998349971100005789736159999999999976
Q gi|254780615|r 402 SE-EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 402 ~~-~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
++ +.|.++.++++|++||+||+++.+ +++||++.+++|.+
T Consensus 387 ~~~~~d~ai~~~~~i~~fL~Q~~~e~~----------~~~~t~~~l~~la~ 427 (427)
T PRK08149 387 ENADNDRAMDKRDSLEAFLKQPVDEKS----------SFSDTLERMNEFAD 427 (427)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCC----------CHHHHHHHHHHHHC
T ss_conf 998899999979999997489998884----------98999999998649
No 19
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=0 Score=952.93 Aligned_cols=446 Identities=24% Similarity=0.373 Sum_probs=410.7
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
..+.+.+++|+|++|.+++++|.|++.. ..++.+.. .++ .. +++.+++++.|.|++|++++||+.|++|++||++
T Consensus 20 ~~~~~~~~~G~V~~v~dgi~~v~GL~~~-~~gel~~f-~~~--~~-g~v~~l~~d~v~~v~lg~~~~i~~G~~V~~TG~~ 94 (502)
T PRK13343 20 ELAPDAQEIGRVESVGDGIAFVSGLPDA-ALDELLRF-DGG--SR-GFAFNLEEELVGAVLLDDTADLRAGTEVKRTGRV 94 (502)
T ss_pred CCCCCEEEEEEEEEECCCEEEEECCCCC-CCCCEEEE-CCC--CE-EEEEECCCCEEEEEEECCCCCCCCCCEEEECCCC
T ss_conf 8877236767999982867999267414-23888997-899--77-9999414983999995598788999999968995
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||++|||||+|++|+||||+|++...++||++++||++++|.++++||+||||+||+|+|||||||+|||||+|+|
T Consensus 95 l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~gIfg~~GvG 174 (502)
T PRK13343 95 LEVPVGDALLGRVIDPLGRPLDGGGPLEATATRPIERPAPAIIERDSVTEPLQTGLKVIDALIPIGRGQRELIIGDRQTG 174 (502)
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCC
T ss_conf 48875731025873788344389999887643214688978332166675431260674055664678577513678888
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+.++|.| ++.++++|||++||||+|||++|++++.+ .++|+||++|+++||+||++|+++||+
T Consensus 175 KT~L~~~~I~n-q~~~~vi~Vyv~IGer~~ev~~~v~~l~~------------~gal~~tvvV~ata~~p~~~r~~ap~~ 241 (502)
T PRK13343 175 KTAIAIDAIIN-QKDKDVICVYVAIGQKASTVARVIDTLRE------------HGALEYTTVVVAEASDPPGLQYLAPFA 241 (502)
T ss_pred CCHHHHHHHHH-HCCCCCEEEEEEEEEEEHHHHHHHHHHHH------------CCCCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 04899999997-25788749999960451659899999876------------485131224523778986887555665
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
|+||||||||||+|||++|||+||||+||||||+++||||+++|||||+||+||+|+|||++.+ +||||+||+|++
T Consensus 242 a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGSITalp~V~~ 321 (502)
T PRK13343 242 GCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGSLTALPIIET 321 (502)
T ss_pred HCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf 20257999966996799995668999999899997489987667694588772689988875268899846645169972
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
++||+|||||||++|||||||||||+||++||||||||+.|+||+++ ..+.+.|+++++++|..|++|+|++.|.+++.
T Consensus 322 ~~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~-~aq~~~~k~va~~lr~~laqy~el~~f~~fg~ 400 (502)
T PRK13343 322 QAGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGG-KAQHPAIRKESGRLRLDYAQFLELEAFTRFGA 400 (502)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48875663456565222616997245322683785178776135685-77889999999999999998999999998743
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCC--------EEECCCCCCCEEECHH-HHHHHHHHHHCCCCCCCCHHHHHHCCCH
Q ss_conf 556998899999999999998349971--------1000057897361599-9999999997676446897897641899
Q gi|254780615|r 398 MDELSEEDKLVVARARKLERFMSQPFH--------VAESFTGLPGKFVSLE-ETIRGFKGLVQGEYDHLPELAFYMVGSI 468 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~--------~~e~ft~~~g~~v~~~-eti~~~~~il~g~~d~~pe~~~~~~g~i 468 (478)
+|+++++..++|+++|++||+||+| ++..|++.+|.+..++ ++|+.|+..+.+.+|+.++..+.+++..
T Consensus 401 --~ld~~~~~~l~rg~r~~~~lkQ~~~~p~~~~~qv~~l~a~~~g~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 478 (502)
T PRK13343 401 --RLDAGTRKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNNGLLDDVPLDNIPPFEEELLAKLDARPSALLFALAPT 478 (502)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_conf --589999999999999999857888999789999998877448873666889999999999999986669999999742
No 20
>PRK07594 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=945.27 Aligned_cols=415 Identities=25% Similarity=0.393 Sum_probs=389.6
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 56534138999955789998166652314189981699559999998708987999981487888788888977984898
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV 84 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V 84 (478)
.-...+|||++|.|+++++.+++..+|..|.+...+ ..+|||+|.+ +.+.+|||++++||++|++|.++|++++|
T Consensus 17 ~g~~~~G~v~~v~G~~iea~~~~~~~Gelc~i~~~~----~~aEVvgf~~-~~~~l~~~~~~~Gi~~G~~V~~~g~~~~V 91 (433)
T PRK07594 17 DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGING-SKALLSPFTSTIGLHCGQQVMALRRRHQV 91 (433)
T ss_pred CCCEEEEEEEEEECCEEEEEECCCCCCCEEEEEECC----EEEEEEEEEC-CEEEEEECCCCCCCCCCCEEEECCCCCEE
T ss_conf 985579899999663899986898868879997589----0799999979-97999978887778999999968997478
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHH
Q ss_conf 85923765588787523016787530011002345444100001342000231100235570215410036756666248
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTV 164 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~ 164 (478)
|||++|||||+|++|+||||++ +....+++++++||||++|.++++||+||||+||+|+|||||||+|||||+|||||+
T Consensus 92 ~vG~~lLGRVvd~lG~PiDg~~-~~~~~~~~~~~~pp~p~~R~~i~epl~TGIkaID~l~pigrGQR~gIfgg~GvGKTt 170 (433)
T PRK07594 92 PVGEALLGRVIDGFGRPLDGRE-LPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST 170 (433)
T ss_pred ECCHHHCCCEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCEEEECCCCCCCHHH
T ss_conf 7287332787578876358999-888763525678949400267786143674000135771247874204789998558
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999998850578852687621643459999998542442001222344433231699971766896787777777877
Q gi|254780615|r 165 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244 (478)
Q Consensus 165 l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~t 244 (478)
|+.||+++ .++|+|||++||||+|||+||++++. +.++++||++|++|||+||++|+++||+|+|
T Consensus 171 Ll~~i~~~---~~adv~V~~lIGERgrEv~efie~~~------------~~~~~~rsvvV~atsd~p~~~R~~a~~~a~a 235 (433)
T PRK07594 171 LLAMLCNA---PDADSNVLVLIGERGREVREFIDFTL------------SEETRKRCVIVVATSDRPALERVRALFVATT 235 (433)
T ss_pred HHHHHHHC---CCCCCEEEEEECCCHHHHHHHHHHHH------------HCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999842---47981599994100488999999865------------3366203899995588999999999877667
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 68999866996799971559998760124553114410110122356665788876317776532566654304766441
Q gi|254780615|r 245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 245 iAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~d 324 (478)
|||||||||+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||++++||||+||||++|+||+||
T Consensus 236 iAEyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~gYppsvf~~l~~LlERag~~~~GSITa~~tVlv~gdD~~d 315 (433)
T PRK07594 236 IAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE 315 (433)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 89999866964899734388899998789986479998788895498887888875137999756566556535886668
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 05899997503425641156631886753223554311162012899999999999999989989999997365569988
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEE 404 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~ 404 (478)
||+||++|||||||||||+||++||||||||+.|+||+| +++++++|+++|+++|.+|++|+|+||+|++|+|.+++|+
T Consensus 316 Pi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRv~-~~i~~~~h~~~a~~~r~~la~y~e~edli~~GaY~~G~d~ 394 (433)
T PRK07594 316 PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF-PVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDT 394 (433)
T ss_pred CHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 627877766145999838999679999808860564442-5546299999999999999999999999983397789998
Q ss_pred -HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf -99999999999998349971100005789736159999999999976
Q gi|254780615|r 405 -DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 405 -~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
.|.++++.++|++||+|+.+ .+.++++|++.++.|+.
T Consensus 395 ~~D~ai~~~~~i~~fL~Q~~~----------e~~~~e~~~~~L~~ll~ 432 (433)
T PRK07594 395 DTDKAIDTYPDICTFLRQSKD----------EVCGPELLIEKLHQILT 432 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 999999714899998479989----------99899999999999853
No 21
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=947.24 Aligned_cols=407 Identities=31% Similarity=0.513 Sum_probs=385.4
Q ss_pred EEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCHHH
Q ss_conf 38999955789998166652314189981699559999998708987999981487888788888977984898859237
Q gi|254780615|r 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEAT 90 (478)
Q Consensus 11 GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~~l 90 (478)
|||++|.|+++++.|+...+|..|++... ++.++.+|||+| +++.+.+|+|++++||++|++|+.++++++||||++|
T Consensus 1 GrV~~V~G~vIea~g~~~~IGe~c~I~~~-~g~~i~aEVVgf-~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~v~vg~~l 78 (411)
T TIGR03496 1 GRLTRVVGLVLEAVGLRAPVGSRCEIESA-DGDPIEAEVVGF-SGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSL 78 (411)
T ss_pred CEEEEEEEEEEEEECCCCCCCCEEEEEEC-CCCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHH
T ss_conf 97999980189997379997888999938-997899999997-2997999986688788889999978996667638765
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 65588787523016787530011002345444100001342000231100235570215410036756666248999999
Q gi|254780615|r 91 LGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 91 LGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
||||+|++|+||||++++...++||++++||||++|.++++||+||||+||+|+|||||||+|||||+|+|||+|+.||+
T Consensus 79 LGRVid~lG~PlDg~~~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pig~GQR~gIf~g~GvGKs~Ll~~ia 158 (411)
T TIGR03496 79 LGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRIGIFAGSGVGKSVLLGMMA 158 (411)
T ss_pred CCCEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 37885788876577788887845650079968143178776211583466344661468631322799986779999997
Q ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98850578852687621643459999998542442001222344433231699971766896787777777877689998
Q gi|254780615|r 171 NNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250 (478)
Q Consensus 171 ~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfr 250 (478)
+| .++|++||++||||+||++||++++. +.++|+||++|++|||+||++|+++||+|+|+|||||
T Consensus 159 ~~---~~adv~VialIGeR~rev~efie~~~------------~~~~~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfr 223 (411)
T TIGR03496 159 RY---TEADVVVVGLIGERGREVKEFIEEIL------------GEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFR 223 (411)
T ss_pred HC---CCCCEEEEECCCCCHHHHHHHHHHHH------------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 53---48988999532530589999999862------------2256521699994388998999999999999999999
Q ss_pred HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC--CCCEEEEEEEEECCCCCCCHHHH
Q ss_conf 6699679997155999876012455311441011012235666578887631777--65325666543047664410589
Q gi|254780615|r 251 DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL--KGSITSVQAIYVPADDLTDPAPA 328 (478)
Q Consensus 251 d~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~--~GSIT~~~tV~~~~dD~~dpi~~ 328 (478)
||||||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+.. +||||+||||++|+||+||||||
T Consensus 224 d~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~~V~~~~dD~~dpi~d 303 (411)
T TIGR03496 224 DQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIAD 303 (411)
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHH
T ss_conf 66994699974688999999899987379998667885388887788874368999898687735897579875664577
Q ss_pred HHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHH
Q ss_conf 999750342564115663188675322355431116201289999999999999998998999999736556998-8999
Q gi|254780615|r 329 TSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE-EDKL 407 (478)
Q Consensus 329 ~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~-~~~~ 407 (478)
+++|||||||||||+||++||||||||+.|+||+| +++++++|+++++++|++|++|+|+||++++++|.+++| +.|.
T Consensus 304 ~~~~ilDG~ivLsr~la~~g~yPAIdvl~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~~~li~~g~y~~g~d~~~d~ 382 (411)
T TIGR03496 304 AARAILDGHIVLSRELAEQGHYPAIDILASISRVM-PDVVSPEHLQLARRFKQLLSRYQENRDLISIGAYQPGSDPELDQ 382 (411)
T ss_pred HHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 65651404899939899679999718640564423-32168999999999999999989999999974723699989999
Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHH
Q ss_conf 99999999998349971100005789736159999999
Q gi|254780615|r 408 VVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRG 445 (478)
Q Consensus 408 ~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~ 445 (478)
++.++++|++||+|+++.. .+++||++.
T Consensus 383 ai~~~~~i~~fL~Q~~~e~----------~~~~~~~~~ 410 (411)
T TIGR03496 383 AIALYPRIEAFLQQGMRER----------ASFEESLEA 410 (411)
T ss_pred HHHHHHHHHHHCCCCCCCC----------CCHHHHHHH
T ss_conf 9997999999728999999----------799999964
No 22
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=943.33 Aligned_cols=412 Identities=29% Similarity=0.462 Sum_probs=385.1
Q ss_pred EEEEEEECCEEEEEECCCC--CCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCH
Q ss_conf 3899995578999816665--23141899816995599999987089879999814878887888889779848988592
Q gi|254780615|r 11 GRIQQIMGAVVDVVFVNSL--PPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGE 88 (478)
Q Consensus 11 GrV~~V~G~vvev~g~~~~--~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~ 88 (478)
|||++|.|++|+|+|+... .+..|.+.. .++..+.+||++| +++.+.+|+|++++||++|++|.+|+++++||||+
T Consensus 1 GrV~~I~G~viev~g~~~~~~iGe~c~I~~-~~g~~~~aEVvg~-~~~~v~l~~~~~t~Gi~~G~~V~~tg~~~~v~vg~ 78 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRA-RDGRPVLAEVVGF-NGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHP 78 (418)
T ss_pred CEEEEEECCEEEEEECCCCCCCCCEEEEEC-CCCCEEEEEEEEE-CCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCH
T ss_conf 989999783999981566677688899991-9998899999998-19989999907988989999999689974888174
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-HHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 3765588787523016787530-011002345444100001342000231100235570215410036756666248999
Q gi|254780615|r 89 ATLGRIMNVIGEPVDDQGAIIS-SEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIM 167 (478)
Q Consensus 89 ~lLGRViD~lG~PLDg~g~i~~-~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~ 167 (478)
+|||||+|++|+||||+|++.. ..+||++++||||++|.++++||+||||+||+|+|||||||+|||||+|||||+|+.
T Consensus 79 ~lLGRVid~~G~PlDg~g~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pig~GQRigIfgg~GvGKt~Ll~ 158 (418)
T TIGR03498 79 SWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRKRVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLS 158 (418)
T ss_pred HHCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHH
T ss_conf 22051754467635789998777568765168998221068887431576021201550257664113789998889999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998850578852687621643459999998542442001222344433231699971766896787777777877689
Q gi|254780615|r 168 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAE 247 (478)
Q Consensus 168 ~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAE 247 (478)
|+++| .++|+|||++||||+||++||++++. ++++++||++|++|||+||++|+++||+|+|+||
T Consensus 159 ~i~~~---~~adv~V~aliGeRgrEv~efi~~~~------------~~~~l~~tvvv~atsd~p~~~R~~a~~~a~aiAE 223 (418)
T TIGR03498 159 MLARN---TDADVVVIALVGERGREVREFLEDDL------------GEEGLKRSVVVVATSDESPLMRRQAAYTATAIAE 223 (418)
T ss_pred HHHHH---CCCCEEEEEEEEEEHHHHHHHHHHHH------------HCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99875---07986899883026899999999865------------3156442699994488987888888878778999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHC--CCCCCCEEEEEEEEECCCCCCCH
Q ss_conf 9986699679997155999876012455311441011012235666578887631--77765325666543047664410
Q gi|254780615|r 248 HFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERIT--TTLKGSITSVQAIYVPADDLTDP 325 (478)
Q Consensus 248 yfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag--~~~~GSIT~~~tV~~~~dD~~dp 325 (478)
||||||+|||++|||+||||+|+||||+++||||+++|||||+|++||+|+|||| +.++||||+||||++|+||+|||
T Consensus 224 yFrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~~v~~~~dD~~dp 303 (418)
T TIGR03498 224 YFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEP 303 (418)
T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 99867983899955725889999999986589998677884177772687865136899985699999996338886776
Q ss_pred HHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-
Q ss_conf 5899997503425641156631886753223554311162012899999999999999989989999997365569988-
Q gi|254780615|r 326 APATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEE- 404 (478)
Q Consensus 326 i~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~- 404 (478)
|||++++||||||||||+||++||||||||+.|+||+|+ ++++++|+++|+++|++|++|+|+||+|++++|++++|+
T Consensus 304 i~d~~~~i~Dg~ivLsr~la~~g~yPAIdvl~S~SR~~~-~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~g~d~~ 382 (418)
T TIGR03498 304 VADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAP-RVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPE 382 (418)
T ss_pred CHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 177776762638998488986799997088526644485-4356999999999999999889999999974866799988
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 9999999999999834997110000578973615999999999997
Q gi|254780615|r 405 DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 405 ~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
.|.++.++++|++||+|+.+ ++.+++||++.+++||
T Consensus 383 ~d~ai~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~il 418 (418)
T TIGR03498 383 LDEAIRLVPKIYEFLTQGPD----------EPTSLQDPFADLAAIL 418 (418)
T ss_pred HHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHC
T ss_conf 99999979999997089998----------9989999999999769
No 23
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=944.18 Aligned_cols=422 Identities=25% Similarity=0.420 Sum_probs=395.5
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCC--CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEE--
Q ss_conf 76456534138999955789998166652314189981699--55999999870898799998148788878888897--
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKG--SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVID-- 77 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g--~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~-- 77 (478)
..-+..+.+|||++|.|.++|+.|+++.+|..|.+...+++ ..+.+|||+| +++.+.+|||+++.||.+|++|..
T Consensus 20 ~~~~~~~~~GrV~~v~G~~iea~G~~a~iG~~C~I~~~~g~~~~~v~AEVVGF-~~~~~~Lmp~~~~~Gi~~G~~V~~~~ 98 (455)
T PRK07960 20 AQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGF-NGQRLFLMPLEEVEGILPGARVYARN 98 (455)
T ss_pred HCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECC
T ss_conf 36997614668999973599996778897998999707998777167999987-69958996479766579999997246
Q ss_pred -----CCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -----798489885923765588787523016787530011002345444100001342000231100235570215410
Q gi|254780615|r 78 -----TGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKI 152 (478)
Q Consensus 78 -----tg~~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~ 152 (478)
+++..+||||++|||||+|++|+||||++++....++|++++||||++|.++++||+||||+||+|+|||||||+
T Consensus 99 ~~~~~~~~~~~vpVg~~lLGRVvd~lG~PlDg~~~~~~~~~~pi~~~~pnp~~R~~i~epL~TGIraID~llpigrGQRi 178 (455)
T PRK07960 99 ISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTTETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRM 178 (455)
T ss_pred CCCCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEE
T ss_conf 76555788887203846306351899982689999998761535589978221178787232684444033671478776
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCH
Q ss_conf 03675666624899999998850578852687621643459999998542442001222344433231699971766896
Q gi|254780615|r 153 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPP 232 (478)
Q Consensus 153 gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~ 232 (478)
|||||+|||||+|+.|+++| .++|++||++||||+|||+||++++. ++++++||++|++|||+||
T Consensus 179 gIfagsGvGKs~Ll~~iar~---~~adv~Vi~lIGERgrEv~efi~~~l------------~~~~~~rsvvv~atsd~~p 243 (455)
T PRK07960 179 GLFAGSGVGKSVLLGMMARY---TRADVIVVGLIGERGREVKDFIENIL------------GAEGRARSVVIAAPADVSP 243 (455)
T ss_pred ECCCCCCCCHHHHHHHHHHH---HCCCEEEEEEECEEHHHHHHHHHHHH------------CCCCCCCEEEEEECCCCCH
T ss_conf 32489988499999999886---08985899720406289999999975------------1477421279984266684
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC--CCCCCEE
Q ss_conf 78777777787768999866996799971559998760124553114410110122356665788876317--7765325
Q gi|254780615|r 233 GARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT--TLKGSIT 310 (478)
Q Consensus 233 ~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~--~~~GSIT 310 (478)
++|+++|++|+|||||||||||||||+|||+||||+|+||||+++||||+++|||||+|++||+|+||+|+ .++||||
T Consensus 244 ~~r~~aa~~a~aiAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~gepP~~~GYppsvf~~l~~L~ERaG~~~~~~GSIT 323 (455)
T PRK07960 244 LLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSIT 323 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 88887899999999999855873799973647888888888876379986557783067773789985047899981137
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66654304766441058999975034256411566318867532235543111620128999999999999999899899
Q gi|254780615|r 311 SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQ 390 (478)
Q Consensus 311 ~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~ 390 (478)
+||||++|+||++|||||+++|||||||||||+||++||||||||+.|+||+|. ++++++|+++|+++|++|++|+|+|
T Consensus 324 a~~tVl~~gdD~~dPi~d~~~silDGhivLsr~la~~g~yPAIDvl~S~SR~m~-~i~~~~h~~~a~~~r~~la~y~~~~ 402 (455)
T PRK07960 324 AFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMT-ALIDEQHYARVRTFKQLLSSFQRNR 402 (455)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888996368886787167645421259998289996799997086504755040-0079999999999999999999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 99997365569988-9999999999999834997110000578973615999999999997
Q gi|254780615|r 391 DIIAILGMDELSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 391 ~~i~~~g~~~l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
|+|++|+|.+++|+ .|.++.+.++|++||+|+++.. .+++|+++.++.|.
T Consensus 403 dli~iG~Y~~G~d~~~D~ai~~~~~i~~fL~Q~~~e~----------~~~~~t~~~L~~lf 453 (455)
T PRK07960 403 DLVSVGAYAKGSDPMLDKAIALWPQLEAFLQQGIFER----------ADWEDSLQGLELIF 453 (455)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC----------CCHHHHHHHHHHHH
T ss_conf 9998618658998679999986899999847998898----------69999999999874
No 24
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=943.00 Aligned_cols=418 Identities=28% Similarity=0.436 Sum_probs=395.8
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEE
Q ss_conf 65341389999557899981666523141899816995599999987089879999814878887888889779848988
Q gi|254780615|r 6 KTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVP 85 (478)
Q Consensus 6 ~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~Vp 85 (478)
-+..+|+|++|.|+++++.|++...|..|.+...+++..+.+||++| +++.+.+|+|+++.||+.|++|.++|++++||
T Consensus 16 ~s~~yG~V~~V~G~li~v~G~~~~iGe~~~I~~~~~g~~~~geVvg~-~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~vp 94 (435)
T PRK08472 16 LSPRFGSITKISANIIEARGLKPSVGDIVKIVEENDGKECLGMVVVI-EKEQFGISPFSFIEGFKIGDKVFISDEGLNIP 94 (435)
T ss_pred CCCCCCEEEEEECEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCCEEE
T ss_conf 66778689999573999994588767879999769996778999988-59989999836887899999999899973787
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
Q ss_conf 59237655887875230167875300110023454441000013420002311002355702154100367566662489
Q gi|254780615|r 86 VGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVL 165 (478)
Q Consensus 86 VG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l 165 (478)
||++|||||+|++|+||||+|++...+++|++++||||++|.++++||+||||+||+|+|||||||+|||||+|+|||+|
T Consensus 95 vg~~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigrGQR~gIf~g~GvGKt~L 174 (435)
T PRK08472 95 VGRNLLGRVVDPLGRPIDGKGAIDYTEYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL 174 (435)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 58340278877788645899998876230114789880451688874115855774326624776651235899983357
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999988505788526876216434599999985424420012223444332316999717668967877777778776
Q gi|254780615|r 166 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 (478)
Q Consensus 166 ~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ti 245 (478)
+.||++| .++++|||++||||+||++||+++.. .+.++||++|++|||+||++|+++||+|+|+
T Consensus 175 l~~i~~~---~~~dv~V~~lIGeR~rEv~efie~~~-------------~~~l~~tvvvvatsd~p~~~r~~a~~~a~ai 238 (435)
T PRK08472 175 MGMIVKG---CLAPIKVVALIGERGREIPEFIEKNL-------------GGDLSNTVIVVATSDDSPLMRKYGAFCAMSV 238 (435)
T ss_pred HHHHHHH---HCCCEEEEEEECEEHHHHHHHHHHHH-------------HHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8888776---15998899761312278999999874-------------1132225999846889989998888899999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCCCC
Q ss_conf 899986699679997155999876012455311441011012235666578887631777-6532566654304766441
Q gi|254780615|r 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL-KGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 246 AEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~~d 324 (478)
||||||||+|||++|||+||||+|+||||+++||||+++|||||+|++||+|+||||+.. +||||+||||++|+||+||
T Consensus 239 AEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~~~~GSIT~i~~v~~~gdD~~~ 318 (435)
T PRK08472 239 AEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSD 318 (435)
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 99998679848998436278899999999865899975563835776657888864258898514888778504887677
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 0589999750342564115663188675322355431116201289999999999999998998999999736556998-
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE- 403 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~- 403 (478)
|||||++|||||||||||+||++||||||||+.|+||+|+ ++++++|+++|+++|++|++|+|+|+++++++|++++|
T Consensus 319 pi~d~~~si~DG~ivLsr~La~~g~yPAIdvl~S~SR~~~-~~~~~~h~~~a~~~r~~~a~y~e~e~li~ig~y~~g~d~ 397 (435)
T PRK08472 319 PIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMK-DIISPEHNLWARKFKRLYSLLKENEVLIRIGAYQKGSDK 397 (435)
T ss_pred CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 7455554540607999787986699998486314544140-013699999999999999998989999996486579998
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 899999999999998349971100005789736159999999999976
Q gi|254780615|r 404 EDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 404 ~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
+.+.++.+++++++||+||++ .+.+++||++.+|+||.
T Consensus 398 ~~d~ai~~~~~i~~fL~Q~~~----------e~~~~eet~~~l~~ils 435 (435)
T PRK08472 398 ELDEAISKKELMEQFLKQNEN----------ELFPFEQSFELLEEILT 435 (435)
T ss_pred HHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHC
T ss_conf 999999847999997799999----------99799999999999739
No 25
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=940.98 Aligned_cols=411 Identities=32% Similarity=0.517 Sum_probs=391.4
Q ss_pred EEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCHHH
Q ss_conf 38999955789998166652314189981699559999998708987999981487888788888977984898859237
Q gi|254780615|r 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEAT 90 (478)
Q Consensus 11 GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~~l 90 (478)
|||++|.|+++++.|+++.++..|++...+ +..+.+||++| +++.+.+|+|+++.||+.|++|.+|+++++||||++|
T Consensus 1 GrV~~i~G~~iev~g~~~~iGe~c~I~~~~-g~~i~aEVv~~-~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~l 78 (413)
T TIGR03497 1 GKVTRVIGLTIESKGPKAKIGELCSILTKG-GKPVLAEVVGF-KEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGL 78 (413)
T ss_pred CEEEEEEEEEEEEEECCCCCCCEEEEEECC-CCEEEEEEEEE-CCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCC
T ss_conf 989999827999980799856759999489-98899999998-2997999993698788999999989997478868430
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 65588787523016787530011002345444100001342000231100235570215410036756666248999999
Q gi|254780615|r 91 LGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 91 LGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
||||+|++|+||||++++...++||++++||||++|.++++||+||||+||+|+|||||||+|||||+|+|||+|+.||+
T Consensus 79 LGRV~d~~G~PlDg~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~Ll~~ia 158 (413)
T TIGR03497 79 LGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIA 158 (413)
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 56887767665589867777611444468996344067883420386542165761137544210589987769999999
Q ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98850578852687621643459999998542442001222344433231699971766896787777777877689998
Q gi|254780615|r 171 NNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250 (478)
Q Consensus 171 ~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfr 250 (478)
+| +++|+|||++||||+||++||+++.. +..+++||++|++|||+||++|+++||+|+|+|||||
T Consensus 159 ~~---~~adv~Vi~liGERgrEv~ef~~~~l------------~~~~l~rtvvv~atsd~p~~~r~~a~~~a~aiAEyfr 223 (413)
T TIGR03497 159 RN---AKADINVIALIGERGREVRDFIEKDL------------GEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFR 223 (413)
T ss_pred HH---HCCCCCEEEEEEEECHHHHHHHHHHH------------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87---43785238886332289999999863------------1256421599984587887999887746327899998
Q ss_pred HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 66996799971559998760124553114410110122356665788876317776532566654304766441058999
Q gi|254780615|r 251 DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATS 330 (478)
Q Consensus 251 d~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~ 330 (478)
|+||||||+|||+||||+|+||||+++||||+++|||||+|++||+|+||||+.++||||+||||++|+||+||||||++
T Consensus 224 d~Gk~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~ERag~~~~GSIT~~~~v~~~~dD~tdPi~d~~ 303 (413)
T TIGR03497 224 DQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSITGFYTVLVDGDDMNEPIADAV 303 (413)
T ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHH
T ss_conf 67996899973712988999999986589998878685499887898886138999854667789712887677716667
Q ss_pred HHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q ss_conf 9750342564115663188675322355431116201289999999999999998998999999736556998-899999
Q gi|254780615|r 331 FTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE-EDKLVV 409 (478)
Q Consensus 331 ~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~-~~~~~i 409 (478)
+|||||||||||+||++||||||||+.|+||+|+ ++++++|+++|+++|++|++|+|+||++++++|.+++| +++.++
T Consensus 304 ~si~DG~ivLsr~la~~g~yPaIdvl~S~SR~~~-~~~~~~h~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai 382 (413)
T TIGR03497 304 RGILDGHIVLSRELAAKNHYPAIDVLASVSRVMN-EIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAI 382 (413)
T ss_pred HHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 5750618998688986699998186424655343-115699999999999999988999999996286679998899999
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHH
Q ss_conf 9999999983499711000057897361599999999999
Q gi|254780615|r 410 ARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGL 449 (478)
Q Consensus 410 ~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~i 449 (478)
.++++|++||+|+++ .+.+++||++.+|.|
T Consensus 383 ~~~~~i~~fL~Q~~~----------e~~~~~~t~~~l~~l 412 (413)
T TIGR03497 383 RYIEKINSFLKQGID----------EKFTFEETVQLLKTL 412 (413)
T ss_pred HHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHH
T ss_conf 989999997389999----------997999999999986
No 26
>KOG1350 consensus
Probab=100.00 E-value=0 Score=957.62 Aligned_cols=466 Identities=72% Similarity=1.108 Sum_probs=455.0
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEEC
Q ss_conf 53413899995578999816665231418998169955999999870898799998148788878888897798489885
Q gi|254780615|r 7 TESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPV 86 (478)
Q Consensus 7 ~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpV 86 (478)
..+.|+|+.|.|.+++|.|.+..|.+++.+++......+++||.+++++++|++++++.|+|+.+|.+|..||.|++|||
T Consensus 49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipV 128 (521)
T KOG1350 49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPV 128 (521)
T ss_pred CCCCCCEEEEEEEEEEEECCCCCCCHHHCEEECCCCCEEEEHHHHHHCCCEEEEEEECCCHHHHCCCCCCCCCCCEEEEC
T ss_conf 24677279987005787538888533210464378860541787773767278998437311223852024799635631
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHH
Q ss_conf 92376558878752301678753001100234544410000134200023110023557021541003675666624899
Q gi|254780615|r 87 GEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLI 166 (478)
Q Consensus 87 G~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~ 166 (478)
|.+.|||++|.+|+|+|+.||+.+..+.|||..+|.+.+.....++|+||||++|+|.|..||+|+|+|||+|||||+|+
T Consensus 129 G~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlI 208 (521)
T KOG1350 129 GPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 208 (521)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCEEEH
T ss_conf 78887668874178554458855333564224770676514317887624343442132024873444225776613329
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999885057885268762164345999999854244200122234443323169997176689678777777787768
Q gi|254780615|r 167 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 (478)
Q Consensus 167 ~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiA 246 (478)
+++|+|++|+|++++||+++|||.||+||+|+||+|+++.. ..+..+|..+|++|||+||++|.|++++|+|+|
T Consensus 209 mELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~------l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvA 282 (521)
T KOG1350 209 MELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIN------LEGETSKVALVYGQMNEPPGARARVALTGLTVA 282 (521)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCEEE------CCCCCCEEEEEEECCCCCCCCEEEEEEECCCHH
T ss_conf 99987888862886786314533344307899998638121------257763378986215799873014543111599
Q ss_pred HHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCH
Q ss_conf 999866-9967999715599987601245531144101101223566657888763177765325666543047664410
Q gi|254780615|r 247 EHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDP 325 (478)
Q Consensus 247 Eyfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dp 325 (478)
|||||+ |+|||||+||++||.||++|+|.++||+|++.||||++.++|..++||+..+++||||++++||+|+||++||
T Consensus 283 EYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtTkkGSiTSvQAvYVPADDLtDP 362 (521)
T KOG1350 283 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAVYVPADDLTDP 362 (521)
T ss_pred HHHHCCCCCEEEEEEHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCC
T ss_conf 98634466668986123466631524899986358410256763201113566763004567556788998510105898
Q ss_pred HHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 58999975034256411566318867532235543111620128999999999999999899899999973655699889
Q gi|254780615|r 326 APATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEED 405 (478)
Q Consensus 326 i~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~~ 405 (478)
.|.++|+|||.+.||||.+++.|+|||||||.|.||.|+|+++|++||++|+.++++|+.|++|+|+|+|+|+|+||++|
T Consensus 363 aPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~Vqk~LQ~YKsLQDIIAILGmDELSEeD 442 (521)
T KOG1350 363 APATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARGVQKTLQDYKSLQDIIAILGMDELSEED 442 (521)
T ss_pred CCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHH
T ss_conf 75420000332345433367607766658766534236844145677789999999999888898899995730103012
Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCC
Q ss_conf 9999999999998349971100005789736159999999999976764468978976418999998877439
Q gi|254780615|r 406 KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478 (478)
Q Consensus 406 ~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~~~~ 478 (478)
|+.+.|+|+|++||+|||+|+|.|||.+|++|++++|+++|++||+|+||++||++|||+|.|||+.+||+++
T Consensus 443 kLTV~RARKiqRFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lPE~AFYmvG~iee~~~KA~~l 515 (521)
T KOG1350 443 KLTVARARKIQRFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLPEQAFYMVGGIEEVVAKAEKL 515 (521)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHEEEECCHHHHHHHHHHH
T ss_conf 3549999999998738502454213888724329999999999865764677552603426799999999999
No 27
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=938.00 Aligned_cols=419 Identities=26% Similarity=0.405 Sum_probs=390.9
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 56534138999955789998166652314189981699559999998708987999981487888788888977984898
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV 84 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V 84 (478)
...++.|+|++|.|.++++.+++...+..|.+. . ..+.+||++| +++.+.+|+|+++.||+.|++|.+||++++|
T Consensus 25 ~~vr~~G~V~~V~g~iv~~~l~~~~~Gelc~i~--~--~g~~aeVv~~-~~~~v~l~~~~~~~Gi~~G~~V~~tG~~l~V 99 (445)
T PRK06820 25 EGLRYRGPIVEIGPTLLRASLPNVAQGELCRIE--P--QGMLAEVVSI-EQEMALLSPFASSDGLRCGQWVTPLGHMHRV 99 (445)
T ss_pred CCCEEEEEEEEEECEEEEEECCCCCCCCEEEEE--C--CCEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCEEE
T ss_conf 984667699999276999965887848989992--7--9989999998-7897999988788788999999979996088
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHH
Q ss_conf 85923765588787523016787530011002345444100001342000231100235570215410036756666248
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTV 164 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~ 164 (478)
|||++|||||+|++|+||||+ ++...+++|++++||||++|+++++||+||||+||+|+|||||||+||||++|+|||+
T Consensus 100 ~VG~~lLGRVvD~lG~PiDgg-~~~~~~~~pi~~~~p~p~~R~~i~~pL~TGIraID~l~pigrGQR~gIfgg~GvGKT~ 178 (445)
T PRK06820 100 QVGADLAGRILDGLGAPIDGG-PPLTGQWRELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKST 178 (445)
T ss_pred ECCCCCCCCEECCCCCCCCCC-CCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCH
T ss_conf 728240278706887531899-8877743203589968320268785112685466256774478742110689998122
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999998850578852687621643459999998542442001222344433231699971766896787777777877
Q gi|254780615|r 165 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244 (478)
Q Consensus 165 l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~t 244 (478)
|+.+++++ .++|+|||++||||+||++||++++. ..++++||++|++|||+||++|+++||+|+|
T Consensus 179 Ll~~i~~~---~~adv~V~~~IGeRgrEv~efie~~~------------~~~~~~rtvvV~atsd~p~~~R~~a~~~a~a 243 (445)
T PRK06820 179 LLSMLCAD---SAADVMVLALIGERGREVREFLEQVL------------TPEARARTVVVVATSDRPALERLKGLSTATT 243 (445)
T ss_pred HHHHHHHH---CCCCEEEEEEEEEECHHHHHHHHHHH------------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 34456530---67887999987441289999999864------------2376110699941676898999999876114
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 68999866996799971559998760124553114410110122356665788876317776532566654304766441
Q gi|254780615|r 245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 245 iAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~d 324 (478)
+||||||||||||++|||+||||+|+||||+++||||+++|||||+|++||+|+||||+..+||||+||||++|+||+||
T Consensus 244 iAEyfrd~Gk~VLli~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~L~ERag~~~~GSITal~~V~~~~dD~td 323 (445)
T PRK06820 244 VAEYFRERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLVEGDDMNE 323 (445)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 88999867984899844657888899899986479997677785499888888873047889756778889705887677
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 05899997503425641156631886753223554311162012899999999999999989989999997365569988
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEE 404 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~ 404 (478)
|||||++|||||||||||+||++||||||||+.|+||+| +++++++|+++|+++|++|++|+|+|++|++|+|..++|.
T Consensus 324 pi~d~~~silDG~ivLsr~La~~g~yPAIDvl~SvSRv~-~~~~~~~h~~~a~~~r~~la~y~e~e~li~~G~y~~g~d~ 402 (445)
T PRK06820 324 PVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIM-PQIVSAGQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDL 402 (445)
T ss_pred CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 716767565153899848798669999818740564546-2220299999999999999999999999984787679998
Q ss_pred -HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf -9999999999999834997110000578973615999999999997
Q gi|254780615|r 405 -DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 405 -~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
.|.+++++++|++||+|++.+...+ .+.+++||++.+..|+
T Consensus 403 ~~d~ai~~~~~i~~fL~Q~~~~~~~~-----~~~~~~~~~~~l~~~~ 444 (445)
T PRK06820 403 QADEALQRYPAICAFLQQDHSLTRDP-----DTAHLDTTLEHLAQVV 444 (445)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHHHHHH
T ss_conf 99999987899999858999888887-----7779899999999863
No 28
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=932.95 Aligned_cols=419 Identities=24% Similarity=0.375 Sum_probs=395.1
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r 4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
....+..|||++|.|.++++.|+...+|..|.+...+ +..+.+|||+| +++.+.+|||++++||+.|++|++++++++
T Consensus 12 ~~~~r~~GrV~~i~G~~ie~~g~~~~iG~~c~I~~~~-g~~v~aEVVgf-~~~~~~L~p~~~~~Gi~~G~~V~~~g~~~~ 89 (434)
T PRK07196 12 IHLARVAGRLVRVTGLLLESVGCRLAIGQRCRIESVD-ETFIEAQVVGF-DRDITYLMPFKHPGGVLGGARVFPSEQDGE 89 (434)
T ss_pred CCCCEEEEEEEEEECCEEEEECCCCCCCCEEEEEECC-CCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCE
T ss_conf 9862488899999710899980698989989998089-98889999998-199699998888778899999998899876
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 88592376558878752301678753001100234544410000134200023110023557021541003675666624
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
||||++|||||+|++|+||||+|++..+..++++.+++||++|.++++||+||||+||+|+|||||||+|||||+|+|||
T Consensus 90 v~vg~~lLGRVvD~~G~PlDg~g~~~~~~~~~~~~~~~nPl~R~~i~e~l~TGIraID~l~pigrGQRigIfggsGvGKs 169 (434)
T PRK07196 90 LLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS 169 (434)
T ss_pred EECCHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHH
T ss_conf 77686224757767886268998888884655668999830137888721268624415577024524210147899789
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r 164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 (478)
Q Consensus 164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ 243 (478)
+|+.||+++ .++|+|||++||||+||++||++++. ++++++||++|++|||+||++|++++|+|+
T Consensus 170 ~Ll~~I~r~---~~advvVi~lIGeRgrEv~efi~~~~------------~~~~l~~svvv~atsd~~p~~r~~a~~~a~ 234 (434)
T PRK07196 170 VLLGMITRY---TQADVVVVGLIGERGREVKEFIEHSL------------QAAGMAKSVVVAAPADESPLMRIKATELCH 234 (434)
T ss_pred HHHHHHHHH---HCCCEEEEEECCEEHHHHHHHHHHHH------------HCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999999897---37998999742223499999999874------------246743269998458898788889998899
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCC
Q ss_conf 76899986699679997155999876012455311441011012235666578887631777-65325666543047664
Q gi|254780615|r 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL-KGSITSVQAIYVPADDL 322 (478)
Q Consensus 244 tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~ 322 (478)
|+||||||||+|||++|||+||||+|+||||+++||||+++|||||+|++||+|+||+|+.. +||||+||||++|+||+
T Consensus 235 aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~svf~~l~~l~ERaG~~~~~GSITa~~tv~~~~dD~ 314 (434)
T PRK07196 235 AIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQ 314 (434)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC
T ss_conf 89999986798569995474688999999997568999867758438888589998521578862488888886268887
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
+||||||++|||||||||||+||++|||||||++.|+||+|+ ++++++|++++.++|++|++|+|+||+|++|+|.+++
T Consensus 315 ~dpi~d~~~silDGhivLsr~la~~G~yPaIdvl~S~SR~m~-~i~~~~~~~~a~~~r~~la~y~e~e~li~~G~Y~~G~ 393 (434)
T PRK07196 315 QDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMS-QVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGA 393 (434)
T ss_pred CCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 887066657550754998476886699997388626422551-0166999999999999999999999999852855799
Q ss_pred HH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 88-9999999999999834997110000578973615999999999997
Q gi|254780615|r 403 EE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 403 ~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
|+ .|.+++++++|++||+|+.+ ...+++++++.+..+.
T Consensus 394 d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~~s~~~l~~lf 432 (434)
T PRK07196 394 DPMADQAVHYYPAITQFLRQEVG----------HPALFSASVEQLTGMF 432 (434)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHC
T ss_conf 98999999858999998289999----------9949999999999873
No 29
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=930.78 Aligned_cols=416 Identities=26% Similarity=0.390 Sum_probs=390.6
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEE
Q ss_conf 64565341389999557899981666523141899816995599999987089879999814878887888889779848
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQI 82 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l 82 (478)
..+....+|||++|.|+++++.|+++..|..|.+ . ...+.+|||+| +++.+.+|||+++.||+.|++|+++++++
T Consensus 15 ~~p~~~~~GrV~~V~g~~i~a~G~~~~iGe~c~i--~--~~~~~aeVvgf-~~~~v~l~p~~~~~gi~~G~~V~~~g~~~ 89 (432)
T PRK06793 15 ETPFYTKVGKVHSVQEQFFVAKGPKAKIGDVCFV--G--EHNVLCEVIAI-EKENNMLLPFEQTEKVCYGDSVTLIAEDV 89 (432)
T ss_pred CCCCCEEEEEEEEEECEEEEEEECCCCCCCEEEE--C--CCCEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCC
T ss_conf 6887447889999935199999379875898998--6--89818999998-58939999887877889999999799975
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCH
Q ss_conf 98859237655887875230167875300110023454441000013420002311002355702154100367566662
Q gi|254780615|r 83 TVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGK 162 (478)
Q Consensus 83 ~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGK 162 (478)
+||||++|||||+|++|+|||+++++...+++|++++||||++|.++++||+||||+||+|+|||||||+|||||+|+||
T Consensus 90 ~vpVg~~lLGRViD~lG~PlD~~~~~~~~~~~~~~~~~~np~~R~~i~e~l~TGIraID~l~pigrGQR~gIfg~sGvGK 169 (432)
T PRK06793 90 VIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGK 169 (432)
T ss_pred EEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCH
T ss_conf 78889563287757896615899988877434432899883013777874004873100015612462666632689878
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 48999999988505788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r 163 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG 242 (478)
Q Consensus 163 T~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a 242 (478)
|+|+.||++| +++|+|||++||||+|||+||+++.. ++++++||++|++|||+||++|+++||+|
T Consensus 170 stLl~~i~~~---~~adv~Vi~lIGeRgrEv~efi~~~l------------~~~gl~~tvvV~atsd~p~~~r~~a~~~a 234 (432)
T PRK06793 170 STLLGMIAKN---AKADINVISLVGERGREVKDFIRKEL------------GEEGMRKSVVVVATSDESHLMQLRAAKLA 234 (432)
T ss_pred HHHHHHHHHH---CCCCCEEEEEEEEECHHHHHHHHHHH------------HCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999999872---45786579998886279999999986------------44675212788725889989999887551
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
Q ss_conf 77689998669967999715599987601245531144101101223566657888763177765325666543047664
Q gi|254780615|r 243 LTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDL 322 (478)
Q Consensus 243 ~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~ 322 (478)
+|+||||||||+|||++|||+||||+|+|||||++||||. .||||++|+.+++|+||||++++||||+||||++|+||+
T Consensus 235 ~aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~-~Gy~p~~~s~l~~LlERag~~~~GSITa~~tVl~~gdD~ 313 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI-GGKTLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDL 313 (432)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 2378899866996899945678888887477885379998-988864587899999754036886357888998328866
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
+||||||++|||||||||||+||++|||||||++.|+||+|+ ++++++|+++|+++|++|++|+|+||+|++|+|.+++
T Consensus 314 ~~pI~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRv~~-~v~~~~h~~~a~~~r~~la~y~e~edli~iG~Y~~g~ 392 (432)
T PRK06793 314 NGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIME-EIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENA 392 (432)
T ss_pred CCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 787157677662537999675886699997288515422625-4503999999999999999999999999847976699
Q ss_pred H-H-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 8-8-9999999999999834997110000578973615999999999997
Q gi|254780615|r 403 E-E-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 403 ~-~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
| + ++.++++.++|++||+|+.+ ...+++++++.++.|+
T Consensus 393 d~~~~d~a~~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~ 432 (432)
T PRK06793 393 ENAYIFECKNKVEGINTFLKQGRS----------DSFQFDDIVEAMHHIV 432 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHC
T ss_conf 858899999868999998289988----------9979999999999569
No 30
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=0 Score=926.98 Aligned_cols=428 Identities=22% Similarity=0.321 Sum_probs=401.8
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
..+.+.+++|+|.+|.++++.|.|+++. ...++..+.+| ..+++.+++++.|.++.|++..+|..|+.|++||++
T Consensus 21 ~~~~~~~e~G~V~~v~DGia~v~GL~~~--~~~Elv~f~~g---~~G~vlnLe~~~vg~vllg~~~~i~eG~~V~~TG~~ 95 (501)
T CHL00059 21 NREVKIVNTGTVLQVGDGIARIYGLDEV--MAGELVEFEEG---TIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKI 95 (501)
T ss_pred CCCCCCEEEEEEEEECCCEEEEECCCCC--CCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCE
T ss_conf 8777520347999970627998267312--55864996899---879998437880699997698776899988857972
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||+++||||+|++|+||||+|++...++||++++||++++|.++++||+||||+||+|+|||||||+|||||+|||
T Consensus 96 l~VPVG~~lLGRVvd~LG~PiDgkg~i~~~~~~pie~~aP~~~~R~~V~epL~TGIkaID~l~PiGrGQR~lI~Gd~gvG 175 (501)
T CHL00059 96 AQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTG 175 (501)
T ss_pred EEEECCHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC
T ss_conf 47745752314740687754479998898750104379978504466674232342111003676677566775578844
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+.++|.| ++.++++|||++||||+|||++|++++.+ .++|+||++|+++||+||++|+++||+
T Consensus 176 KTtl~~d~Iin-qk~~~vicVyvaIGeR~reV~~~i~~l~~------------~gam~~TvvV~Atadepa~lr~~Apya 242 (501)
T CHL00059 176 KTAVATDTILN-QKGQNVICVYVAIGQKASSVAQVVTTLQE------------RGAMEYTIVVAETADSPATLQYLAPYT 242 (501)
T ss_pred HHHHHHHHHHH-HCCCCCEEEEEEEEEEHHHHHHHHHHHHH------------CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77999999985-24688489999855627789999999975------------697103699961799999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
||||||||||||+|||++|||+||||+|||||||++||||+|+|||||+||.||+|+|||++.+ +||||++|+|++
T Consensus 243 a~aIAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFylhsrLlERa~kl~~~~ggGSiTalpivet 322 (501)
T CHL00059 243 GAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVET 322 (501)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE
T ss_conf 99999999977982899986826988999998986489997667896288785789877650578999884788889982
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
++||+|+|||||++|||||||||||+||++|+|||||++.|+||+.+ ..+.+.++++++.+|..|+||+|++.|.+++.
T Consensus 323 ~~~D~s~yIptnviSItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~-~aq~k~~k~va~~lrl~laq~~el~~f~~f~~ 401 (501)
T CHL00059 323 QSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGS-AAQIKAMKQVAGKLKLELAQFAELEAFAQFAS 401 (501)
T ss_pred CCCCCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 38864555541044405742998565552777743454555112561-76789999987787999998999999998623
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 556998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r 398 MDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL 460 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~ 460 (478)
+|+++++..+.|+++|.++|+||.| .++++++|+..+++..+|.+|++|..
T Consensus 402 --~ld~~t~~~l~rg~r~~e~lkQ~~~----------~p~~~~~q~~~l~a~~~g~ld~~~~~ 452 (501)
T CHL00059 402 --DLDKATQNQLARGQRLRELLKQSQS----------APLTVEEQVATIYTGTNGYLDSLEIG 452 (501)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf --3599999999989999998678889----------99699999999999854986778989
No 31
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=923.47 Aligned_cols=428 Identities=23% Similarity=0.371 Sum_probs=402.0
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
..+.+.+++|+|.+|.+++++|.|++.. ...++..+.++ ..+++.+++++.|.+++|++..+|+.|++|.+||++
T Consensus 20 ~~~~~~~e~G~v~~vgdgia~v~Gl~~~--~~~el~~f~~~---~~g~~~nle~~~vg~v~lg~~~~i~~G~~V~~TG~~ 94 (497)
T TIGR03324 20 QPQLTVQEVGTVESVSTGIARVHGLPGV--GFEELLRFPGG---LLGIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRV 94 (497)
T ss_pred CCCCEEEEEEEEEEECCCEEEEECCCCC--CCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCC
T ss_conf 8875246667999974856999785010--44863880899---889999637883799995698776899999858982
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||++|||||+|++|+||||+||+...++||+++++|++++|+++++||+||||+||+|+|||||||+|||||+|+|
T Consensus 95 l~VPVG~~lLGRVvd~LG~PiDGkgpi~~~~~~pie~~aP~i~~R~~V~epL~TGIkaID~liPIGrGQRelIigdrgtG 174 (497)
T TIGR03324 95 MDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTG 174 (497)
T ss_pred EEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 28744888717645888556789999887641024578989634788887100241455424655677467764588888
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+.++|.| ++..+.+|||++||||+|||++|++++.+ .++|+||++|++++|+||++|+++||+
T Consensus 175 KTtla~dtIin-qk~~~vicVyvaIGqr~seV~~~v~~l~~------------~gal~~TvVV~Ata~dpa~lr~~Apya 241 (497)
T TIGR03324 175 KTAIAIDTILN-QKGRNVLCIYCAIGQRASAVAKVVANLRE------------HGAMDYTIVVVTEGNDPPGLQYIAPYA 241 (497)
T ss_pred HHHHHHHHHHH-CCCCCEEEEEEEEEEEHHHHHHHHHHHHH------------CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 00889999970-45667189999732507879999999874------------875234179995688998999887899
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
||||||||||+|+|||++|||+||||+|||||||++||||+|+|||||+||.||+|+|||++.+ +||||++|+|++
T Consensus 242 a~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFylhsrLLERA~~l~~~~ggGSiTalpivet 321 (497)
T TIGR03324 242 ATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIET 321 (497)
T ss_pred HHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
T ss_conf 99999999968974899997806999999999986489998778893598770788873247789999977232479980
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
++||+|+|||||++|||||||||||+||++|+|||||++.|+||+.+ ..+.+.++++++.+|..|+||+|++.|.+++.
T Consensus 322 ~~~D~sayIptnvisItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~-~aq~~~~k~vag~lrl~laq~~El~~f~qfgs 400 (497)
T TIGR03324 322 EAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGG-KAQLAAYRAVAGDLKLAYAQFEELETFARFGA 400 (497)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCEECCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 28865664454222010867997240765799764356877313672-43058999874456999998999999987624
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 556998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r 398 MDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL 460 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~ 460 (478)
+|+++++..+.|++++.++|+||.| .+.++++++..+++..+|.+|++|..
T Consensus 401 --~ld~~t~~~l~rG~r~~e~lkQ~~~----------~p~~~~~qv~~l~a~~~g~ld~~~~~ 451 (497)
T TIGR03324 401 --RLDENTRKTIEHGRRIRACLKQTQS----------SPLTVPQQIAILLALTNGLFDGVDLD 451 (497)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf --4489999999887999998667778----------99699999999999853986668889
No 32
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=0 Score=922.53 Aligned_cols=428 Identities=24% Similarity=0.381 Sum_probs=398.8
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
..+.+.+++|+|.+|.++++.|.|++.. ...++..+.+| ..+++.+++++.|++++|+++.+|+.|+.|.+||++
T Consensus 20 ~~~~~~~~~G~V~~v~dgia~v~GL~~~--~~~elv~f~~g---~~g~~~nle~d~vg~v~lg~~~~i~~G~~V~~TG~~ 94 (502)
T PRK09281 20 DAEAEVREVGTVLSVGDGIARVYGLDNV--MAGELLEFPGG---VYGIALNLEEDSVGAVILGDYEDIKEGDTVKRTGRI 94 (502)
T ss_pred CCCCCCEEEEEEEEECCCEEEEECCCCC--CCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCC
T ss_conf 8877412446999981738999577535--64886996899---879998247882799994685556899989857982
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||++|||||+|++|+||||+||+...++||+++++|++++|+++++||+||||+||+|+|||||||+|||||+|+|
T Consensus 95 ~~VPVG~~lLGRVvd~lG~PiDGkgpi~~~~~~pie~~aP~i~~R~~V~epL~TGIkaID~l~PiGrGQR~lIiGd~gtG 174 (502)
T PRK09281 95 LEVPVGEALLGRVVNPLGQPIDGKGPINATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 174 (502)
T ss_pred EEEECCHHHHCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 57756752303320677452689998888603135588968513577675233113555412565687566752478733
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+.++|.| ++.++.+|||++||||+|||++|++++.+ .++|+||++|+++||+||++|+++||+
T Consensus 175 KT~iaidtIin-qk~~~vicVyvaIGer~seV~~~v~~L~~------------~gal~~TvvV~ata~dpa~lr~~Apya 241 (502)
T PRK09281 175 KTAIAIDTIIN-QKGKDVICIYVAIGQKASTVANVVRKLEE------------HGAMEYTIVVAATASDPAPLQYLAPYA 241 (502)
T ss_pred HHHHHHHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHH------------CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 88999999985-32588369999851221789999998754------------486411379971799999999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
||||||||||+|+|||++||||||||+|||||||++||||+|+|||||+||.||+|+|||++.+ +||||++|+|++
T Consensus 242 a~aIAEyFrd~G~dVLlv~DdLtr~A~A~REisLll~rPPgreaYPgdVFylhsrLlERa~~l~~~~ggGSiTalpivet 321 (502)
T PRK09281 242 GCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIET 321 (502)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE
T ss_conf 99999999967994899985568999999888986279987667894077786799887651478899840676766660
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
++||+|+|||||++|||||||||||+||++|+|||||++.|+||+.+ ..+.+.++++++.+|..|++|+|+++|.++ |
T Consensus 322 ~a~DvsayIptnvisItDGqI~L~~~L~~~G~~PAIdvg~SVSRVG~-~aQ~k~~k~vag~lrl~laqy~el~~fa~f-g 399 (502)
T PRK09281 322 QAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGISVSRVGG-AAQIKAMKKVAGTLRLDLAQYRELEAFAQF-G 399 (502)
T ss_pred CCCCCCCCCCCCCEEEECCEEEEEHHHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_conf 48865565440202341446998642766898750144553334675-024499999999999999999999999975-3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 556998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r 398 MDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL 460 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~ 460 (478)
.| |+++++..+.|++++++||+||.| .++++++|+..+++..+|.+|++|..
T Consensus 400 sd-ld~~t~~~l~rg~r~~e~LkQ~~~----------~p~~~~~qv~~l~a~~~g~ld~~~~~ 451 (502)
T PRK09281 400 SD-LDEATRAQLERGQRLVELLKQPQY----------SPLPVEEQVVILYAGTNGYLDDVPVE 451 (502)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 56-699999999999999998678889----------99699999999999964986678989
No 33
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=919.90 Aligned_cols=420 Identities=24% Similarity=0.362 Sum_probs=396.5
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r 4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
-.+.+.+|||++|.|+++++.|+++..|..|++...+ +..+.+|||+| +++.+.+|||++++||+.|++|++++++++
T Consensus 14 ~~p~r~~GrV~~V~G~~ie~~g~~~~iGelc~I~~~~-~~~i~aeVvgf-~~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~ 91 (434)
T PRK05922 14 WQPYRECGLLSRVSGNLLEAQGLSACLGELCQISLPK-SPPILAEVIGF-HNQTTLLMSLSPIHYVALGAEVLPLRRPPS 91 (434)
T ss_pred CCCCEEEEEEEEEECEEEEEEECCCCCCCEEEEEECC-CCEEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCCE
T ss_conf 7985446799999664999980687879859998189-98789999987-299799997777667899999998999876
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 88592376558878752301678753001100234544410000134200023110023557021541003675666624
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
||||++|||||+|++|+||||++++...+++|++++||||++|.++++||+||||+||+|+|||||||+|||||+|+|||
T Consensus 92 v~vg~~lLGRVld~~G~PiDg~~~~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQR~gIf~g~GvGKt 171 (434)
T PRK05922 92 LHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSPPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS 171 (434)
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHH
T ss_conf 77680614657268846448999999876052458994822216888755478556735677246767773079999789
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r 164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 (478)
Q Consensus 164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ 243 (478)
+|+.|+++| .++++|||++||||+||++||++++.+ ..+++||++|++|||+||++|+++||+|+
T Consensus 172 ~Ll~~ia~~---~~~~v~V~alIGeR~rEv~efie~~~~------------~~~~~~tvvv~atsd~p~~~r~~a~~~a~ 236 (434)
T PRK05922 172 SLLSTIAKG---SKSTINVIALIGERGREVREYIEQHKE------------GLKAQRTIIIASPAHETAPTKVIAGRAAM 236 (434)
T ss_pred HHHHHHHHC---CCCCEEEEEEEEEEHHHHHHHHHHHHH------------CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999867653---678759998455138999999998661------------34521037875037788788899998876
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 76899986699679997155999876012455311441011012235666578887631777653256665430476644
Q gi|254780615|r 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLT 323 (478)
Q Consensus 244 tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~ 323 (478)
|+||||||||+||||+||||||||+|+||||+++||||+++|||||+|++||+|+||||++++||||+||||++++|| +
T Consensus 237 aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~gYp~svf~~l~~L~ERag~~~~GSITa~~tVl~~~~~-~ 315 (434)
T PRK05922 237 TIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAILHYPNH-P 315 (434)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC-C
T ss_conf 799999977996799954788999999899986489998768894499987888860437999655649899853898-7
Q ss_pred CHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 10589999750342564115663188675322355431116201289999999999999998998999999736556998
Q gi|254780615|r 324 DPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE 403 (478)
Q Consensus 324 dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~ 403 (478)
|||+|+++|||||||||||+ +++++||||||+.|+||+|. ++++++|+++|+++|++|++|+|+||+|++++|++++|
T Consensus 316 dpi~d~~~silDGhIvLsr~-~~~~~~PAIDvl~S~SR~~~-~~~~~~h~~~a~~~r~~la~y~e~~dli~~G~y~~g~d 393 (434)
T PRK05922 316 DIFTDYLKSLLDGHFFLTPQ-GKALASPPIDILTSLSRSAR-QLALPHHYAAAEELRSLLKAYHEALDIIQLGAYTPGQD 393 (434)
T ss_pred CCCCCCCHHHEEEEEEECHH-HHHCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 65677333022224675354-66157897565667645142-33569999999999999999999999998529767887
Q ss_pred HH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCC
Q ss_conf 89-999999999999834997110000578973615999999999997676
Q gi|254780615|r 404 ED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGE 453 (478)
Q Consensus 404 ~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~ 453 (478)
.. |.++++.++|++||+||+. +++++++|++.++.|++++
T Consensus 394 ~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~~t~~~l~~l~~~e 434 (434)
T PRK05922 394 AHLDRAVKLLPSIKQFLSQPLS----------SYCALHNTLKQLEALLKHE 434 (434)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHHCCC
T ss_conf 6699999999999997189999----------9739999999999987489
No 34
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=917.60 Aligned_cols=422 Identities=26% Similarity=0.404 Sum_probs=389.0
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r 4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
.+-.+..|+|++|.|++++++|+.....+++.|.+..++..+.+||++| +++.+.+|||+++.||+.|++|.+|| +++
T Consensus 21 ~p~~r~~G~V~~V~g~i~~v~GL~~~~~~Ge~~~i~~~~~~~~aeVv~~-~~~~v~l~p~g~~~gi~~G~~V~~tg-~l~ 98 (450)
T PRK06002 21 EPLVRIGGTVSEVTPSHYRVRGLSRFVRLGDRVAIRSDGGTQLGEVVRV-DEDGVLVKPFEPRIPAGLGAAVFRKG-PLR 98 (450)
T ss_pred CCEEEEEEEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEE-ECCCEEEEECCCCCCCCCCCEEEECC-CEE
T ss_conf 9823456899999381899998866677798899927997179999986-37818999876866688999898479-804
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCC-HHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCH
Q ss_conf 885923765588787523016787530-0110023454441000013420002311002355702154100367566662
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIIS-SEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGK 162 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~-~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGK 162 (478)
++||++|||||+|++|+||||+||+.. ..++|++++|||+++|.++++||+||||+||+|+|||||||+|||||+||||
T Consensus 99 v~vg~~lLGRVvD~lG~PlDgkgpl~~~~~~~pi~~~~p~~~~R~~i~epL~TGIkaID~l~pigrGQR~gIfgg~GvGK 178 (450)
T PRK06002 99 IRPDPSWKGRVINALGEPIDGKGPLAPGTRPMSIDATAPPAMRRARVDTPLRTGVRVIDIFTPLCAGQRIGIFAGSGVGK 178 (450)
T ss_pred ECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCH
T ss_conf 44680004787378886578999988776135156899681212788876631031334214601487777426899987
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 48999999988505788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r 163 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG 242 (478)
Q Consensus 163 T~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a 242 (478)
|+|+.|++++ ...|+|||++||||+|||+||+++.. + +.|+||++|+++||+||++|+++||+|
T Consensus 179 TtLl~~i~~~---~~~d~vV~~lIGeRgrEv~ef~e~~l------------~-~~l~~svvV~atsd~~p~~r~~a~~~a 242 (450)
T PRK06002 179 STLLAMLARA---DAFDTVVVALVGERGREVREFLEDTL------------A-DHLSKAVAVVATGDESPMMRRLAPKTA 242 (450)
T ss_pred HHHHHHHHHH---CCCCEEEEEEEEEEHHHHHHHHHHHH------------H-CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 5999999862---58987999986474899999999876------------4-220005999705889828876556554
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCC
Q ss_conf 77689998669967999715599987601245531144101101223566657888763177--7653256665430476
Q gi|254780615|r 243 LTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT--LKGSITSVQAIYVPAD 320 (478)
Q Consensus 243 ~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~--~~GSIT~~~tV~~~~d 320 (478)
+|+||||||||+|||++|||+||||+|+||||+++||||+++|||||+|+.||+|+||+|+. ++||||+||||++++|
T Consensus 243 ~aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~r~gYp~~vf~~l~~LlERag~~~~~~GSITal~~V~~~~d 322 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGD 322 (450)
T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf 43799999679967999826178888999999875899975677832776606888762257778730688888871388
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 64410589999750342564115663188675322355431116201289999999999999998998999999736556
Q gi|254780615|r 321 DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDE 400 (478)
Q Consensus 321 D~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~ 400 (478)
|++||||||++|||||||||||+||++|||||||++.|+||+|+ .+++++|+++++++|++|++|+|+||++++++|.+
T Consensus 323 D~~~pI~d~~~silDGhIvLsr~la~~G~~PAIDv~~SvSRv~~-~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~ 401 (450)
T PRK06002 323 DHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLAK-HVWTPEQRKLVRRLKSMIARFEETRDLRLMGGYQP 401 (450)
T ss_pred CCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 76775788786773549998488986799997288734201771-22429999999999999997777899999759467
Q ss_pred CCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCC
Q ss_conf 9988-999999999999983499711000057897361599999999999767644
Q gi|254780615|r 401 LSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYD 455 (478)
Q Consensus 401 l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d 455 (478)
++|+ .|.+++++++|++||+|+.+... + +|++..+++.++|...
T Consensus 402 g~d~~~d~ai~~~~~i~~fL~Q~~~ep~----------s-~d~~~~l~~~~~g~~~ 446 (450)
T PRK06002 402 GADPELDQAVDLVPRIYEALQQSPGDPP----------S-DDPFADLAAALKGAAQ 446 (450)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCC----------C-HHHHHHHHHHHHHHHH
T ss_conf 9999999999826999998389989998----------7-7899999998532130
No 35
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=0 Score=902.25 Aligned_cols=431 Identities=27% Similarity=0.389 Sum_probs=395.5
Q ss_pred CCCEEEEEEECCEEEEEECC-CCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCC-CCEEEECCCEEEEE
Q ss_conf 34138999955789998166-65231418998169955999999870898799998148788878-88889779848988
Q gi|254780615|r 8 ESVGRIQQIMGAVVDVVFVN-SLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSR-GDCVIDTGTQITVP 85 (478)
Q Consensus 8 ~~~GrV~~V~G~vvev~g~~-~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~-G~~V~~tg~~l~Vp 85 (478)
+++|+|++|.|++|.+++.. ...+..|.+... +|..+.+||+++ +++.+.+++|++|+||++ |++|.+||++++||
T Consensus 2 ~~Yg~V~~I~Gplv~~~g~~~~~~gElv~I~~~-~g~~~~GeVi~~-~~d~~~iqv~e~t~Gl~~~g~~V~~tG~plsV~ 79 (460)
T PRK04196 2 KEYRTVSEIVGPLMFVEGVEGVAYGELVEIELP-NGEKRRGQVLEV-SGDKAVVQVFEGTTGLNLKGTKVRFTGETLELP 79 (460)
T ss_pred CCCCEEEEEECCEEEEECCCCCCCCCEEEEECC-CCCEEEEEEEEE-ECCEEEEEECCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 423269999886899925888987878999839-998888999998-699799999159888785997899479952887
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
Q ss_conf 59237655887875230167875300110023454441000013420002311002355702154100367566662489
Q gi|254780615|r 86 VGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVL 165 (478)
Q Consensus 86 VG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l 165 (478)
||++|||||||++|+|||++|++...+++|+++.||||++|.+++++|+||||+||+|+|++||||++||||+|+|||+|
T Consensus 80 vG~~lLGRV~DglGrPlDg~~~i~~~~~~~i~g~~~np~~R~~~~e~l~TGI~~ID~l~pl~rGQr~~If~gsGvgks~l 159 (460)
T PRK04196 80 VSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNEL 159 (460)
T ss_pred ECHHHHCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCEECCCCEEEECCCCEECCCEEEEECCCCCCCCHH
T ss_conf 18777279847788636889988877341258899892552688846137967961643322475765533899881169
Q ss_pred HHHHHHHHH---HCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999885---05788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r 166 IMELINNVA---KAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG 242 (478)
Q Consensus 166 ~~~~i~n~~---~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a 242 (478)
+.++++|.+ +.++++|||++||||+||++||++++.+++ +|+||++|++|||+||++|+++||+|
T Consensus 160 ~~~i~~qa~~~~~~~~~~vV~~~iGeR~~E~~e~~~~~~~~g------------~m~rtvlv~~ts~~p~~~R~~~~~~a 227 (460)
T PRK04196 160 AAQIARQAKVLGSEEKFAVVFAAMGITFEEANFFMDEFEETG------------ALERSVLFLNLADDPAIERILTPRMA 227 (460)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCEECHHHHHHHHHHHHCC------------CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999999877505788815999732076068999999887448------------63200475135889889988887666
Q ss_pred HHHHHHHH-HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC--CCCEEEEEEEEECC
Q ss_conf 77689998-6699679997155999876012455311441011012235666578887631777--65325666543047
Q gi|254780615|r 243 LTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL--KGSITSVQAIYVPA 319 (478)
Q Consensus 243 ~tiAEyfr-d~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~--~GSIT~~~tV~~~~ 319 (478)
+|+||||| |||+|||++|||+||||+|+||||+++||||+++|||||+|++|++||||||+.+ +||||+||+|++|+
T Consensus 228 ~tiAEyfr~d~G~~VL~~~dd~tr~A~A~REis~~lge~P~~~GYP~~l~s~la~l~ERAG~~~~~~GSIT~i~~V~~pg 307 (460)
T PRK04196 228 LTTAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATLYERAGRIKGKKGSITQIPILTMPE 307 (460)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
T ss_conf 57899999856995799975807888876688875479998777686268886888872355578983269999997679
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEE----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 664410589999750342564115663188675322355431116201----2899999999999999989989999997
Q gi|254780615|r 320 DDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDI----VGQEHYDVARRVQEILQRYKSLQDIIAI 395 (478)
Q Consensus 320 dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i----~~~~h~~~a~~~r~~l~~y~el~~~i~~ 395 (478)
||+|||||||+++||||||+|||+||++||||||||+.|+||+|+..+ ..++|++++++++..|++|+|+++++++
T Consensus 308 dD~t~Pi~~~t~~i~dg~i~L~r~La~~g~yPaId~l~S~SR~~~~~ig~~~~~~~h~~va~~~~~~la~~~el~~i~~l 387 (460)
T PRK04196 308 DDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHADVSNQLYAAYARGKDLRELAAI 387 (460)
T ss_pred CCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87666467767644043899838999679988788765501102033565521668999999999999978889999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCC
Q ss_conf 365569988999999999999-98349971100005789736159999999999976764468978976418
Q gi|254780615|r 396 LGMDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVG 466 (478)
Q Consensus 396 ~g~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g 466 (478)
+|.++|+++||..++++++|+ +||+||+|. .+++++++...|.+|+ .+|+.++..+-
T Consensus 388 vG~d~Ls~~dk~~l~~a~~~~~~fL~Q~~~~----------~~~~~~~l~~~~~~l~----~~p~~~~~~~~ 445 (460)
T PRK04196 388 VGEEALSERDRKYLKFADAFEREFVNQGFYE----------NRSIEETLDLGWELLS----ILPESELKRIK 445 (460)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC----------CCCHHHHHHHHHHHHH----HCCHHHHHCCC
T ss_conf 4960189889999999989999854799999----------8489999999999998----67899874368
No 36
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=0 Score=823.21 Aligned_cols=420 Identities=23% Similarity=0.326 Sum_probs=381.6
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEEC
Q ss_conf 53413899995578999816665231418998169955999999870898799998148788878888897798489885
Q gi|254780615|r 7 TESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPV 86 (478)
Q Consensus 7 ~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpV 86 (478)
.+.+|||++|.|++|++++++...+..|.+.. .+....+||+++ +++.+.+++|++|+||++|++|.+||++++|||
T Consensus 2 ~k~yg~V~~I~GplI~v~~~~~~~gElv~I~~--~~~~~~gEVI~~-~~d~v~iqvfe~T~Gi~~G~~V~~tG~~l~V~v 78 (432)
T PRK02118 2 QKIYTKITSIKGNLITVEAEGVGYGELATVER--KGRSSLASVLKL-DGDKVTLQVFGGTSGISTGDEVVFLGRPMQVTF 78 (432)
T ss_pred CCCCCEEEEEECCEEEEEECCCCCCCEEEEEC--CCCEEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCCEEEE
T ss_conf 72214699998838999978898787899984--997799999998-199899998469878999999996899767882
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHH
Q ss_conf 92376558878752301678753001100234544410000134200023110023557021541003675666624899
Q gi|254780615|r 87 GEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLI 166 (478)
Q Consensus 87 G~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~ 166 (478)
|++|||||||++|+||||++++. .+.++++++++||++|.+++++|+||||+||+|+||+||||++|||++|+|||+|+
T Consensus 79 g~~lLGRV~DglGrPiDggp~~~-~~~~~i~~~~inP~~R~~p~e~l~TGI~aID~l~~l~rGQKi~IFsgsG~gks~L~ 157 (432)
T PRK02118 79 SDNLLGRRFNGTGKPIDGGPELE-GEPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVKSQKIPIFSSSGEPYNALL 157 (432)
T ss_pred CHHHCCCEECCCCCCCCCCCCCC-CCEEECCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 86543786447676158998788-98861369998964206887677889678542367405856987447999763999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999885057885268762164345999999854244200122234443323169997176689678777777787768
Q gi|254780615|r 167 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 (478)
Q Consensus 167 ~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiA 246 (478)
.+++++ ++++++||++||||+||+++|++++.+ .++|+||++|++|||+||++|+++||+|+|+|
T Consensus 158 ~~Ia~~---a~~dvvV~~~iGer~~e~~~f~~~~~~------------~~~l~rtvlv~~ts~~p~~~R~~~~~~altiA 222 (432)
T PRK02118 158 ARIALQ---AEADIIILGGMGLTFDDYLFFKDEFEK------------AGALDRTVMFVHTAVDPPVECLLVPDMALAVA 222 (432)
T ss_pred HHHHHH---CCCCEEEEECCEEECHHHHHHHHHHHH------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 999885---389989640332441258999998750------------68777079983477789899877888888899
Q ss_pred HHHH-HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCCCC
Q ss_conf 9998-6699679997155999876012455311441011012235666578887631777-6532566654304766441
Q gi|254780615|r 247 EHFR-DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL-KGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 247 Eyfr-d~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~~d 324 (478)
|||| |||+|||+++||+||||+|+||||+++||||+++|||||+|++|++||||||+.. +||||+||+|++|+||+||
T Consensus 223 Eyfr~d~G~~VLli~DdlTr~A~A~REIs~~~ge~P~r~GYP~~l~s~La~l~ERAg~~~~~GSIT~i~~v~~p~dD~t~ 302 (432)
T PRK02118 223 EKFAVEEGKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLAKRYEKAVDFADGGSITIIAVTTMPGDDITH 302 (432)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
T ss_conf 99987459729999766788777887898754899987786953999999999834689998026899999757877777
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 058999975034256411566318867532235543111620128----9999999999999998998999999736556
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVG----QEHYDVARRVQEILQRYKSLQDIIAILGMDE 400 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~----~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~ 400 (478)
||||++++||||||||||+ +|||+.|.||+|+ .+++ ++|.++++++++.|++|+++++++++++ +
T Consensus 303 Pi~d~t~~ItdGqIvLsr~--------~id~l~SlSRl~~-~~ig~~tr~dh~~~~~~l~~~ya~~~~~~~~~~~~~--~ 371 (432)
T PRK02118 303 PVPDNTGYITEGQFYLKRG--------RIDPFGSLSRLKQ-LVIGKKTREDHGDLMNAMIRLYADSRKAKEKMAMGF--K 371 (432)
T ss_pred CHHHHHHHHHCCEEEEECC--------CCCCCCCHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_conf 5688999985776885068--------7576443777765-656542499999999999999986557999999976--4
Q ss_pred CCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 9988999999999999-9834997110000578973615999999999997676446897897641899999887
Q gi|254780615|r 401 LSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKK 474 (478)
Q Consensus 401 l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k 474 (478)
||+.|++.++++++++ +|+.|+.+ -+++||++..|.+|. .+|+.++..+- ++.++|
T Consensus 372 ls~~d~~~l~f~~~fe~~f~~~~~~------------~~~~~~ld~~w~~l~----~~~~~~~~~~~--~~~~~~ 428 (432)
T PRK02118 372 LSNWDEKLLAFSELFESRLMDLEVN------------IPLEEALDLGWKILA----QCFTPEEVGIK--EQLIDK 428 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC------------CCHHHHHHHHHHHHH----HCCHHHHHCCC--HHHHHH
T ss_conf 5987899999999999997357899------------658999999999998----76999882799--999987
No 37
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=0 Score=817.43 Aligned_cols=429 Identities=18% Similarity=0.220 Sum_probs=386.8
Q ss_pred EEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCHHH
Q ss_conf 38999955789998166652314189981699559999998708987999981487888788888977984898859237
Q gi|254780615|r 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEAT 90 (478)
Q Consensus 11 GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~~l 90 (478)
=||++|.++|++|.|+... ...++....++.. ..+++.+++++.|.++.+++...|..|++|.+||+.++||||+++
T Consensus 3 pkV~sV~DgIa~V~GL~n~--~~~El~~f~~~~~-v~g~~lnleed~vg~vi~g~~~~i~eGd~V~~Tg~i~~VpVG~~l 79 (507)
T PRK07165 3 PKIKSIFDYIVEVKGEFDY--QQQQVFTLKNNPN-VKLFVISATEDTAYLLINNEKAKIKIGDEIIELNNENKVLTSKEY 79 (507)
T ss_pred CEEEEEECEEEEEECCHHH--CCCCEEEECCCCC-CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCC
T ss_conf 7089981448999677022--4486699648996-289997255361799998798770489999845985788757664
Q ss_pred HHHHHHHHHHHCCCCCC-----CCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
Q ss_conf 65588787523016787-----5300110023454441000013420002311002355702154100367566662489
Q gi|254780615|r 91 LGRIMNVIGEPVDDQGA-----IISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVL 165 (478)
Q Consensus 91 LGRViD~lG~PLDg~g~-----i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l 165 (478)
||||+|++|+|||+++. .......|++++||++++|+++++||+||||+||+|+|||||||++|||++|+|||++
T Consensus 80 LGRVVD~LG~pidp~~~~~~~~~~~~~~~pie~~Apgi~~R~~V~ePLqTGIkaID~miPIGRGQRELIiGDrqTGKTaI 159 (507)
T PRK07165 80 FGKIIDIDGNIIYPKAANPLKSEKAYQTSSAFNLAHGLMTVQTLNEQLYTGIVAIDLLIPIGKGQRELIIGDRQTGKTHI 159 (507)
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 46368899986789898887765433347745579985236767861343467876135556761677735788778899
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999988505788526876216434599999985424420012223444332316999717668967877777778776
Q gi|254780615|r 166 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 (478)
Q Consensus 166 ~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ti 245 (478)
+.++|.| |+..+.+|||++||||.++|.++++.+.+ .++|++|++|+++++.| .+|+.+||+||||
T Consensus 160 AldtIiN-Qk~~~V~cIYVAIGQK~s~Va~iv~~L~~------------~gAm~yTiVV~A~sd~p-~~qylAPy~g~ai 225 (507)
T PRK07165 160 ALNTIIN-QKNRNVKCIYVAIGQKRENLSRIYETLKE------------HDALKNTIIIDAPSTSS-YEQYLAPYVAMAH 225 (507)
T ss_pred HHHHHHH-CCCCCCEEEEEEECCCHHHHHHHHHHHHH------------CCCHHHEEEEECCCCCC-HHHHHHHHHHHHH
T ss_conf 9999984-54689589999831017799999999987------------79756525763157782-7777788888878
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCCCC
Q ss_conf 899986699679997155999876012455311441011012235666578887631777-6532566654304766441
Q gi|254780615|r 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL-KGSITSVQAIYVPADDLTD 324 (478)
Q Consensus 246 AEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~~d 324 (478)
||||+ +|+|||++||||||||+|||||||+++|||+|+|||||+||.||||+||||+.+ +||||++|+++++++|+|+
T Consensus 226 AEyf~-~~~dvLiiyDDLTkhA~AyReisLll~rPPGReayPgdvFy~hsrLLERa~kl~g~gSiTaLPIieT~~gDisa 304 (507)
T PRK07165 226 AENIS-YNDDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDIFFAHSKLLERAGKFKNRKSITALPILQTVDNDITS 304 (507)
T ss_pred HHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCC
T ss_conf 89886-46856999647689999999889872799997789960576616888887612699615760178702786224
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 05899997503425641156631886753223554311162012899999999999999989989999997365569988
Q gi|254780615|r 325 PAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEE 404 (478)
Q Consensus 325 pi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~ 404 (478)
|||+|++||||||||||++||++|++||||++.|+||+. +..+.+.++++++.+|..|++|+|++.+.+++ + +|+++
T Consensus 305 yIpTNviSITDGQI~l~~~Lf~~G~rPAInvglSVSRvG-~~aQ~k~~k~vag~l~l~~aqy~el~~fa~f~-s-dld~~ 381 (507)
T PRK07165 305 LISSNIISITDGQIVTSSELFAQGKLPAIDIDLSVSRTG-SSVQSKNIAKIAKEISKIYRAYKRQLKLSSLD-Y-DLNKE 381 (507)
T ss_pred CCCCCEEEECCCEEEECHHHHHCCCCCCCCCCCEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CCCHH
T ss_conf 356644774176288517677469886523570065157-68889999998636567899999999998654-5-41899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH--HHHHCCCHHH
Q ss_conf 99999999999998349971100005789736159999999999976764468978--9764189999
Q gi|254780615|r 405 DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL--AFYMVGSIDE 470 (478)
Q Consensus 405 ~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~--~~~~~g~i~e 470 (478)
++..+.||+++.++|+||.| .+.++++++..+|.+..|.+|++|+. ++.++-.+-+
T Consensus 382 t~~~l~rG~r~~ellkQ~~~----------~p~~~~~qv~~~~~~~~g~lddv~~~~~al~fi~~~~~ 439 (507)
T PRK07165 382 TSDLLSKGKMIEKLFIQKGF----------SLYSYRFILLISKLISWGLLKDVKDEQKALDFIDYLIE 439 (507)
T ss_pred HHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999732899998667788----------98689999999998754654468777999999999986
No 38
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=0 Score=821.14 Aligned_cols=325 Identities=33% Similarity=0.546 Sum_probs=314.4
Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 48988592376558878752301678753001100234544410000134200023110023557021541003675666
Q gi|254780615|r 81 QITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478)
Q Consensus 81 ~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478)
|++||||++|||||+|++|+||||+|++...++||++++||||++|.+++++|+||||+||+|+|||||||+|||||+|+
T Consensus 1 Pl~vpVg~~lLGRVid~~G~PiDg~~~i~~~~~~pi~~~ap~~~~R~~v~e~l~TGI~~ID~l~pigrGQR~~Ifg~~g~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCC
T ss_conf 96535576651747678834157999999986152568995803307888751157704200266247987874369999
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 62489999999885057885268762164345999999854244200122234443323169997176689678777777
Q gi|254780615|r 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 (478)
Q Consensus 161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~ 240 (478)
|||+|+.++++| .++++|||++||||+||++||++++. +.++++||++|++|||+||++|+++||
T Consensus 81 GKt~Ll~~i~~~---~~~~v~V~~~IGer~rev~e~~~~~~------------~~~~l~~tvvv~atad~~~~~r~~a~~ 145 (326)
T cd01136 81 GKSTLLGMIARG---TTADVNVIALIGERGREVREFIEKDL------------GEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred CCCHHHHHHHHC---CCCCEEEEEEECCCHHHHHHHHHHHH------------CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 846678768641---46775999960533889999999862------------456532228996068899899999888
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC
Q ss_conf 78776899986699679997155999876012455311441011012235666578887631777653256665430476
Q gi|254780615|r 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPAD 320 (478)
Q Consensus 241 ~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~d 320 (478)
+|+|+||||||||||||++||||||||+|+||||+++||||+++||||++|++|++|+||||++++||||+||||++|+|
T Consensus 146 ~a~~~AEyfrd~G~dVL~~~Dsltr~A~A~rEisl~~g~~P~~~gyp~~~f~~~~~l~ERag~~~~GSIT~i~~v~~~~d 225 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGD 225 (326)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf 77777889997587337875246899999999888648998756677668888789888641799985244457870598
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 64410589999750342564115663188675322355431116201289999999999999998998999999736556
Q gi|254780615|r 321 DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDE 400 (478)
Q Consensus 321 D~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~ 400 (478)
|++||||+|++|||||||||||+||++|+||||||+.|+||+| +++++++|+++++++|++|++|+|+|+++++++|.+
T Consensus 226 d~tdpi~~~~~~i~Dg~ivLsr~La~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~ 304 (326)
T cd01136 226 DLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLM-NAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKK 304 (326)
T ss_pred CCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8788627889875473899858899679999748862753366-000679999999999999998999999998549767
Q ss_pred CCH-HHHHHHHHHHHHHHHHCC
Q ss_conf 998-899999999999998349
Q gi|254780615|r 401 LSE-EDKLVVARARKLERFMSQ 421 (478)
Q Consensus 401 l~~-~~~~~i~r~~~i~~fL~Q 421 (478)
++| ++|.++.++++|++||+|
T Consensus 305 g~d~~~d~~i~~~~~i~~fL~Q 326 (326)
T cd01136 305 GSDPEVDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9898999999989999998586
No 39
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=813.34 Aligned_cols=427 Identities=25% Similarity=0.380 Sum_probs=399.6
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEE
Q ss_conf 64565341389999557899981666523141899816995599999987089879999814878887888889779848
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQI 82 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l 82 (478)
......++|+|++|.++++++.|+... ...++....++ +.+++.+++++.|+++.+|+...|..|++|.+||+.+
T Consensus 21 ~~~~~~~~g~V~sv~DgIa~v~Gl~~~--~~~E~~ef~~~---v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~ 95 (504)
T COG0056 21 VEAEVKEVGTVISVGDGIARVSGLENV--MAGELVEFPGG---VKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRIL 95 (504)
T ss_pred HHHHHHCCCEEEEEECCEEEEECCCHH--HCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCEE
T ss_conf 344321164499972546999447435--32845991699---3799985032424699966976645786788507568
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCH
Q ss_conf 98859237655887875230167875300110023454441000013420002311002355702154100367566662
Q gi|254780615|r 83 TVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGK 162 (478)
Q Consensus 83 ~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGK 162 (478)
.||||++++|||+|++|+|+||+||+....+.|++..+|+.++|+++++||+||||+||+|+|||||||++|+|++++||
T Consensus 96 ~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGK 175 (504)
T COG0056 96 EVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGK 175 (504)
T ss_pred EEECCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 87635665140566889826898975423357330207850304423833442057776405657883378751576783
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 48999999988505788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r 163 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG 242 (478)
Q Consensus 163 T~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a 242 (478)
|.++.++|.| |+..+..|||++||++...+..+++.+.+ .++|++|++|+|++++|+.++|.+||+|
T Consensus 176 TaIAidtIiN-Qk~~~v~CIYVAIGQK~stva~vv~tL~e------------~gAm~yTiVV~AsASd~a~lqYLaPy~g 242 (504)
T COG0056 176 TAIAIDTIIN-QKGSGVKCIYVAIGQKRSTVANVVRTLEE------------HGAMDYTIVVAASASDSAPLQYLAPYAG 242 (504)
T ss_pred CHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHH------------CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 1102788983-55689479999815437789999999997------------5975133999814776235555302255
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEEC
Q ss_conf 776899986699679997155999876012455311441011012235666578887631777----6532566654304
Q gi|254780615|r 243 LTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYVP 318 (478)
Q Consensus 243 ~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~~ 318 (478)
|||||||||+|+|||+++||||+||.||||+||+++|||+|++||+|+||.||||+|||++.+ +||||++|+++|+
T Consensus 243 ~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETq 322 (504)
T COG0056 243 CAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQ 322 (504)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC
T ss_conf 58899998659748999607418899999999983699986578886400117999998862024588724751168861
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76644105899997503425641156631886753223554311162012899999999999999989989999997365
Q gi|254780615|r 319 ADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGM 398 (478)
Q Consensus 319 ~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~ 398 (478)
++|+|.|||+|++|||||||||+.+||++|++||||++.||||+. +..+.+.++++++.+|..|++|+|++.|.++ |+
T Consensus 323 agDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvG-ssAQ~kamkkvag~lrl~laqYrel~afsqf-~s 400 (504)
T COG0056 323 AGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVG-SAAQIKAMKKVAGSLRLILAQYRELEAFSQF-GS 400 (504)
T ss_pred CCCEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 686623403545884077078506466468885325784265165-1889999999987899999999989998754-00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 56998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r 399 DELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL 460 (478)
Q Consensus 399 ~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~ 460 (478)
+|++++++.++||+++.+.|+||.| .+.+.++++-.++.+..|.+|++|..
T Consensus 401 -dLd~~T~~~l~~G~r~~ellkQ~~~----------~p~sv~~qv~il~a~~~g~ld~v~v~ 451 (504)
T COG0056 401 -DLDKATRKQLERGKRLTELLKQPQY----------SPLSVEEQVLILYAGTNGYLDDVPVE 451 (504)
T ss_pred -HHCHHHHHHHHCCHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf -2179899999713799999667788----------87538899999999873765678567
No 40
>TIGR01039 atpD ATP synthase F1, beta subunit; InterPro: IPR005722 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the beta subunit found in the F1 complex of F-ATPases. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0008553 hydrogen-exporting ATPase activity phosphorylative mechanism, 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0006754 ATP biosynthetic process, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=811.26 Aligned_cols=458 Identities=70% Similarity=1.099 Sum_probs=444.8
Q ss_pred CCEEEEEEECCEEEEEECC-CCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECC
Q ss_conf 4138999955789998166-652314189981699559999998708987999981487888788888977984898859
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVN-SLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVG 87 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~-~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG 87 (478)
..|+|.+|.|.++++.|.. .+|.+++.+.+.... .+..||...++++.|+++.+..++|+.+|..|..++.+++||||
T Consensus 1 ~~G~~~~v~g~vvdv~f~~~~~P~~~~~l~~~~~~-~l~~e~~~~~G~~~vr~ia~~~~~Gl~r~~~~~~~~~~i~vPvG 79 (460)
T TIGR01039 1 TKGKVVQVIGPVVDVEFEESKLPEIYDALKVELEK-ELVLEVAQHLGDDTVRAIALDSTDGLVRGLEVVDTGKPIEVPVG 79 (460)
T ss_pred CCCEEEEEEHHHEEEEECHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCEEEECCC
T ss_conf 98604440100201111400026799887554102-55634476506760567873143330221355543872551147
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 23765588787523016787530011002345444100001342000231100235570215410036756666248999
Q gi|254780615|r 88 EATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIM 167 (478)
Q Consensus 88 ~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~ 167 (478)
...+||++|.+|+|+|.++++.....+++++.+|.+.+.....+.|+||||+||.|.|+.||+|+++|||+|+|||++++
T Consensus 80 ~~~~G~~~nv~G~~~d~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~tG~kv~dll~P~~~GGk~glfGGaGvGktv~~~ 159 (460)
T TIGR01039 80 KEVLGRIFNVLGEPIDEKGEVKKKEKLPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQ 159 (460)
T ss_pred CCHHHHHHHHHCHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 40455787662100034111002342012206851344334678987336888775154328806773176622456689
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998850578852687621643459999998542442001222344433231699971766896787777777877689
Q gi|254780615|r 168 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAE 247 (478)
Q Consensus 168 ~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAE 247 (478)
++|+|+++.|.+.+||+++|||+||++|+|.||.++++. .+++.+|+++||+||+.|.|.+++++|+||
T Consensus 160 eli~~~a~~~~G~sv~~GvGertreGndly~e~~~~~v~-----------~~~~~lv~Gqm~ePPG~r~rva~~~lt~ae 228 (460)
T TIGR01039 160 ELINNIAKEHGGLSVFAGVGERTREGNDLYLEMKESGVI-----------NSKVALVYGQMNEPPGARLRVALTGLTMAE 228 (460)
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCC-----------CCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999986288079850665333256899998732410-----------123268872136898741103456778888
Q ss_pred HHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHH
Q ss_conf 99866-99679997155999876012455311441011012235666578887631777653256665430476644105
Q gi|254780615|r 248 HFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPA 326 (478)
Q Consensus 248 yfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi 326 (478)
||||. ++|||+|+||++||.+|+.|+|.++||+|++.||+|++..++..|+||+.+++.||||++++||+|+||++||.
T Consensus 229 ~frd~~~~dvl~f~dnifrf~~aG~e~s~llGr~PsavGyqPtl~~~~G~lqeri~st~~~s~ts~qa~yvPadd~tdPa 308 (460)
T TIGR01039 229 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRLPSAVGYQPTLATEMGELQERITSTKKGSITSVQAVYVPADDLTDPA 308 (460)
T ss_pred HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC
T ss_conf 75112466378851446777631047898861011000566303566767877765213553256767863320257886
Q ss_pred HHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 89999750342564115663188675322355431116201289999999999999998998999999736556998899
Q gi|254780615|r 327 PATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDK 406 (478)
Q Consensus 327 ~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~~~ 406 (478)
|.++|+|+|++.+|+|.+++.|+||||||+.|.|+.++|.++|.+||++|.+++.+|++|++++|+|+++|.++|+++|+
T Consensus 309 P~~~fahlda~~~l~r~~~~~GiyPav~Pl~s~s~~l~~~~vG~~hy~~a~~v~~~lq~y~~l~diiailG~del~~~d~ 388 (460)
T TIGR01039 309 PATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPEVVGEEHYEVAREVQSILQRYKELQDIIAILGLDELSEEDK 388 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 30344440002454566875177655465101344430565216789999999999998887888988843144114468
Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHCC
Q ss_conf 999999999998349971100005789736159999999999976764468978976418999998877439
Q gi|254780615|r 407 LVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478 (478)
Q Consensus 407 ~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~~~~ 478 (478)
..+.|+|+|++||+|||+++|.|||.+|++|.+++|+++|+.|+.|+||++||.+||++|.|+|+.+|++.+
T Consensus 389 ~~v~rar~i~~flsq~~~vae~f~G~~G~~v~l~~t~~~f~~~~~G~~d~~Pe~af~~vG~~~~~~~ka~~l 460 (460)
T TIGR01039 389 LVVERARKIERFLSQPFFVAEVFTGSPGKYVKLKDTIEGFKEILEGKYDHLPEQAFYLVGTIEEVVEKAKKL 460 (460)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf 999999999987313200023205788754647889999999846841135245776641489999987339
No 41
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=0 Score=755.67 Aligned_cols=425 Identities=28% Similarity=0.429 Sum_probs=379.6
Q ss_pred CCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECC
Q ss_conf 34138999955789998166652314189981699559999998708987999981487888788888977984898859
Q gi|254780615|r 8 ESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVG 87 (478)
Q Consensus 8 ~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG 87 (478)
...|+|++|.|++|.+++.... ..++.+.+ ++.++.+||+.. +++.+.+++|++|.||.+|++|.+||++++|++|
T Consensus 2 ~~~G~I~~I~GPlV~~e~~~~~-~~~EvV~V--G~~~L~GEVI~i-~gd~a~iQVyE~T~Gl~~G~~V~~TG~pLsV~LG 77 (585)
T PRK04192 2 MTKGKIVRVSGPLVVAEGMGGA-RMYEVVKV--GEEGLIGEIIRV-RGDEASIQVYEETSGIKPGEPVEFTGEPLSVELG 77 (585)
T ss_pred CCCCEEEEEECCEEEEEECCCC-CCCCEEEE--CCCCEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCEEEEEC
T ss_conf 8673699998888999527888-64667998--898557999999-4998999966688899998988847994498867
Q ss_pred HHHHHHHHHHHHHHCCCCC--------------CC---------------------------------------------
Q ss_conf 2376558878752301678--------------75---------------------------------------------
Q gi|254780615|r 88 EATLGRIMNVIGEPVDDQG--------------AI--------------------------------------------- 108 (478)
Q Consensus 88 ~~lLGRViD~lG~PLDg~g--------------~i--------------------------------------------- 108 (478)
++|||||+|++|||||+.+ ++
T Consensus 78 pgLLGrIfDGiqrPLd~i~~~~g~fi~rG~~~~~Ldr~~~w~f~P~~~~Gd~v~~Gdilg~V~Et~~i~H~imvPp~~~g 157 (585)
T PRK04192 78 PGLLGSIYDGIQRPLDELAEKSGDFLKRGVYVPALDREKKWHFKPTVKVGDKVVAGDVLGTVQETGSIEHKIMVPPGVSG 157 (585)
T ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCC
T ss_conf 62552624757786334554326654478878887744445311113558741578657885046653341106988873
Q ss_pred ------------------------------CCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf ------------------------------30011002345444100001342000231100235570215410036756
Q gi|254780615|r 109 ------------------------------ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGA 158 (478)
Q Consensus 109 ------------------------------~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~ 158 (478)
.-.++||+.++. ++.+|.+.++||.||+|+||+|+||+|||+.+||||+
T Consensus 158 ~v~~i~~~G~ytv~d~ia~v~~~~G~~~~~~m~q~WPVR~pr-P~~~r~~p~~PL~TG~RvID~lfpi~rGgt~~IpGgf 236 (585)
T PRK04192 158 TIKEIASEGDYTVDDTIAVVEDEDGKGKELTMMQKWPVRRPR-PYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPF 236 (585)
T ss_pred EEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC-CHHHCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCC
T ss_conf 389970588504301699986267874343311027666889-6233058665410373330023320268623212666
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 66624899999998850578852687621643459999998542442001222344433231699971766896787777
Q gi|254780615|r 159 GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRV 238 (478)
Q Consensus 159 GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~ 238 (478)
|+|||+++++++++ +++|++||++||||++|++|+++||.+.. +...+...|+|||+|++|||+|+++|..+
T Consensus 237 G~GKTvl~~~lak~---s~aDivVyvgcGERgnEm~evl~eFpel~-----Dp~tG~~lm~RTVliaNTSnmPvaaReaS 308 (585)
T PRK04192 237 GSGKTVTQHQLAKW---ADADIVIYVGCGERGNEMTEVLEEFPELK-----DPKTGRPLMERTVLIANTSNMPVAAREAS 308 (585)
T ss_pred CCCHHHHHHHHHHC---CCCCEEEEEEECCCHHHHHHHHHHHHHHC-----CCCCCCHHHCCEEEEEECCCCCHHHHHHH
T ss_conf 66646679999742---68998999973254086999999877603-----75467012030899999999857887651
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC-----CCCCCEEEEE
Q ss_conf 77787768999866996799971559998760124553114410110122356665788876317-----7765325666
Q gi|254780615|r 239 ALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT-----TLKGSITSVQ 313 (478)
Q Consensus 239 ~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~-----~~~GSIT~~~ 313 (478)
+|+|+|+||||||||+|||+|+||+||||+|+||||++++|+|+++|||+++++.++.+|||||+ ...||||.+.
T Consensus 309 iytgiTiAEYfRDmG~~VllmaDStSRwAeAlREIS~rleE~Pg~eGYPaYL~SrLA~fYERAGrV~~~~~~~GSvT~ig 388 (585)
T PRK04192 309 IYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGSEGSVTIIG 388 (585)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCEEEEE
T ss_conf 56788899999976970899975668999998898786436985346782389899999874245550589976279988
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCC------EECCHHHHHHHHHHHHHHHHHH
Q ss_conf 5430476644105899997503425641156631886753223554311162------0128999999999999999899
Q gi|254780615|r 314 AIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI------DIVGQEHYDVARRVQEILQRYK 387 (478)
Q Consensus 314 tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~------~i~~~~h~~~a~~~r~~l~~y~ 387 (478)
+|..||||++||+..++..++..++.||++||+++|||||||+.|.|+.++. .-+++++.+...+++.+|++..
T Consensus 389 aVSppGgDfsePVT~~Tl~~v~~fw~Ld~~lA~~rhfPainwl~SyS~y~~~~~~~~~~~~~~~~~~~r~~~~~iL~~e~ 468 (585)
T PRK04192 389 AVSPPGGDFSEPVTQNTLRIVKVFWALDADLAYRRHYPAINWLTSYSLYLDDVADWWEENVSPDWRELRDEAMSLLQREA 468 (585)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 86589988677357888988878875137677556688667024367788889999987418159999999999987268
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 899999973655699889999999999999-8349971100005789736159999999999976
Q gi|254780615|r 388 SLQDIIAILGMDELSEEDKLVVARARKLER-FMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 388 el~~~i~~~g~~~l~~~~~~~i~r~~~i~~-fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
||++++++.|.|.|+++++..++.++.|++ ||+|+.|.... .|.|+++|...++.|+.
T Consensus 469 ~l~eiv~lvG~d~l~~~~~l~l~~a~~i~~~fLqQnaf~~~D------~~~~~~kq~~ml~~i~~ 527 (585)
T PRK04192 469 ELQEIVRLVGEDALSEEDRLILEVARLIREDFLQQNAFDPVD------TYCPPEKQYEMLKLILT 527 (585)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCHHHHHHHHHHHHH
T ss_conf 999999864775589889789999988655030147899502------48998999999999999
No 42
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=0 Score=740.25 Aligned_cols=270 Identities=28% Similarity=0.449 Sum_probs=259.9
Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 48988592376558878752301678753001100234544410000134200023110023557021541003675666
Q gi|254780615|r 81 QITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478)
Q Consensus 81 ~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478)
.++||||++|||||+|++|+||||+|++...++||+++++|||++|.+++++|+||||+||+|+|||||||+|||||+||
T Consensus 1 sl~VpVG~~lLGRVvd~lG~PiDg~~~i~~~~~~~i~~~ap~p~~R~~v~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CEEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCC
T ss_conf 96987477733747458833127999999986402458997804406778632258535405467236766332057886
Q ss_pred CHHHHHHHHHHHHH---HCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHH
Q ss_conf 62489999999885---057885268762164345999999854244200122234443323169997176689678777
Q gi|254780615|r 161 GKTVLIMELINNVA---KAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSR 237 (478)
Q Consensus 161 GKT~l~~~~i~n~~---~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~ 237 (478)
|||+|+.|+++|+. +.++++|||++||||+||++||++++.+ .++|+||++|++|||+||++|++
T Consensus 81 GKs~L~~~i~~~~~~~~~~~~~v~V~~~IGer~rev~e~~~~l~~------------~~~l~~tvvv~ata~~~p~~r~~ 148 (276)
T cd01135 81 PHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE------------TGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEHHHHHHHHHHHHC------------CCCCCCEEEEEECCCCCHHHHHH
T ss_conf 367899999998775136887359996155532579999999871------------66512101466348897688878
Q ss_pred HHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC--CCCEEEEEE
Q ss_conf 7777877689998-6699679997155999876012455311441011012235666578887631777--653256665
Q gi|254780615|r 238 VALTGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL--KGSITSVQA 314 (478)
Q Consensus 238 ~~~~a~tiAEyfr-d~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~--~GSIT~~~t 314 (478)
+||+|+||||||| |||||||++|||+||||+|+||||+++||||+++|||||+|++|++|+||||+++ +||||+||+
T Consensus 149 a~~~a~aiAEyFr~~~Gk~VLl~~D~ltr~A~A~REisl~~g~~P~~~gYp~~vf~~l~~l~ERag~~~~~~GSITa~~~ 228 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPI 228 (276)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEE
T ss_conf 88887789999887369977999456889999999999864899987888850998867888722467999801899989
Q ss_pred EEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 430476644105899997503425641156631886753223554311
Q gi|254780615|r 315 IYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSM 362 (478)
Q Consensus 315 V~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~ 362 (478)
|++++||++||||||++|||||||||||+||++||||||||+.|+||+
T Consensus 229 v~~~~dD~~~pi~~~~~si~DG~i~Lsr~la~~G~~PAId~~~S~SRv 276 (276)
T cd01135 229 LTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred EECCCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 944798867766777765604599997999967999970875576679
No 43
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=0 Score=721.59 Aligned_cols=273 Identities=77% Similarity=1.177 Sum_probs=266.7
Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 48988592376558878752301678753001100234544410000134200023110023557021541003675666
Q gi|254780615|r 81 QITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478)
Q Consensus 81 ~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478)
|++||||++|||||+|++|+||||++++...++||+++++||+++|.+++++|+||||+||+|+|||||||+||||++|+
T Consensus 1 Pl~ipVg~~lLGRVvd~~G~PiDg~~~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIr~ID~l~pigkGQR~~I~~~~g~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCC
T ss_conf 96577680421656368965248999999986042568996845607878731158666644466147857787579999
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 62489999999885057885268762164345999999854244200122234443323169997176689678777777
Q gi|254780615|r 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 (478)
Q Consensus 161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~ 240 (478)
|||+|++++++|++++|+++|||++||||+||++||++++++ .++++||++|++|||+||.+|+++||
T Consensus 81 GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~------------~~~l~~tvvv~~tad~~~~~r~~~~~ 148 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKE------------SGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCC------------CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 823689999999985089879999842554889999997203------------56653379998345554057899999
Q ss_pred HHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC
Q ss_conf 78776899986-69967999715599987601245531144101101223566657888763177765325666543047
Q gi|254780615|r 241 TGLTVAEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPA 319 (478)
Q Consensus 241 ~a~tiAEyfrd-~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~ 319 (478)
+|+|+|||||| +|+|||+++|||||||+|+||||+++||+|+++||||++|++|++|+||+++.++||||+||||++++
T Consensus 149 ~a~aiAE~frd~~G~dVLll~DslTr~A~A~reis~~~g~~P~~~gyp~~l~~~~~~l~ER~~~~~~GSiT~i~tv~~~~ 228 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPA 228 (274)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
T ss_conf 99999999997289859999718689999999888862899986666830788999999974488898746888997458
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 6644105899997503425641156631886753223554311162
Q gi|254780615|r 320 DDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365 (478)
Q Consensus 320 dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~ 365 (478)
||++|||++++++||||||||||+||++|+||||||+.|+||+|+|
T Consensus 229 dD~~dpi~~~~~~i~dG~ivLsr~la~~g~yPAIdv~~S~SR~m~p 274 (274)
T cd01133 229 DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILDP 274 (274)
T ss_pred CCCCCCHHHHHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 8876617788877407299985889967999963776531012588
No 44
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=0 Score=707.26 Aligned_cols=268 Identities=27% Similarity=0.425 Sum_probs=257.8
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
++||||++|||||+|++|+||||++++...++||+++++|||++|.+++++|+||||+||+|+|||||||+||||++|+|
T Consensus 2 ~~VpVg~~lLGRVid~~G~PiDg~~~~~~~~~~pi~~~~p~p~~R~~i~e~l~TGI~aID~l~pig~GQr~~If~~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCC
T ss_conf 68674746367375688330279999999850202588958521268786110383454134662478675155888755
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
||+|+++++.|+ +.++++|||++||||+||++||++++.+ .++++||++|++|||+||.+|+++||+
T Consensus 82 Kt~l~~~~i~~~-~~~~~~~V~~~IGer~rEv~ef~~~~~~------------~~~l~~tv~v~~t~~~p~~~r~~a~~~ 148 (274)
T cd01132 82 KTAIAIDTIINQ-KGKKVYCIYVAIGQKASTVAQVVKTLEE------------HGAMEYTIVVAATASDPAPLQYLAPYT 148 (274)
T ss_pred HHHHHHHHHHHH-HCCCCEEEEEEECCCHHHHHHHHHHHHH------------CCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 788999999974-1369659999732452269999998760------------576201147740477875877765441
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
|+|+||||||||||||++||||||||+|+||||+++||||+++|||||+|+.|++|+||+|+.. +||||+||+|++
T Consensus 149 a~~iAEyfrd~Gk~VLll~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~~~~l~ERag~~~~~~~~GSiT~~~~v~~ 228 (274)
T cd01132 149 GCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIET 228 (274)
T ss_pred CCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEC
T ss_conf 22267899877994799997889999999999997279997777796278776899986321569998814217789973
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 476644105899997503425641156631886753223554311
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSM 362 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~ 362 (478)
|+||++|||+|++++|+||||||||+||++||||||||+.|+||+
T Consensus 229 ~~dD~t~pi~d~~~~i~dg~ivLsr~la~~g~yPAIdvl~S~SRv 273 (274)
T cd01132 229 QAGDVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRV 273 (274)
T ss_pred CCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 587778851666722204599997999967999980877576778
No 45
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=0 Score=700.74 Aligned_cols=419 Identities=21% Similarity=0.311 Sum_probs=362.1
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCCC-CCE-EEECCCCCEEEEEEEEEECCC-EEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 53413899995578999816665231-418-998169955999999870898-799998148788878888897798489
Q gi|254780615|r 7 TESVGRIQQIMGAVVDVVFVNSLPPI-FSS-LETSDKGSRIVFEVVQHLGEK-TVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 7 ~~~~GrV~~V~G~vvev~g~~~~~~i-~~~-i~~~~~g~~i~~EVV~~l~e~-~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
++.+|.|.+|.|.+....-....|++ ++. +.+.-......++.+.+++++ .|.++.|++..+|..|+.|.+||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GlalNLe~D~~VGvVllg~~~~I~eG~~V~rTG~il~ 116 (574)
T PTZ00185 37 TEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLY 116 (574)
T ss_pred HHHHEEEEECCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHEECCCCCCCEEEEEECCCCCCCCCCEEEEECCEEE
T ss_conf 65410245306436886207999873653689999664122423024135678134999668453247888875154788
Q ss_pred EECCHHHHHHHHHHHHHHCCCC------CCCCCHH-HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 8859237655887875230167------8753001-10023454441000013420002311002355702154100367
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQ------GAIISSE-KRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFG 156 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~------g~i~~~~-~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfg 156 (478)
||||+++||||+|+||+|||.+ +++.... ..|++.++|+.++|+|+++||+||||+||+|+|||||||++|+|
T Consensus 117 vPVG~~~LGRVVdpLG~Pi~~~~~~~~r~~i~~~~~~~~iE~~APgI~~R~pV~ePl~TGikaIDamIPIGRGQRELIIG 196 (574)
T PTZ00185 117 IPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVG 196 (574)
T ss_pred EECCCHHHCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 75270020322256789777764334444320011035323679960105767845565567886436667885203555
Q ss_pred CCCCCHHHHHHHHHHHHHHC-------CCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 56666248999999988505-------78852687621643459999998542442001222344433231699971766
Q gi|254780615|r 157 GAGVGKTVLIMELINNVAKA-------HGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMN 229 (478)
Q Consensus 157 g~GvGKT~l~~~~i~n~~~~-------~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~ 229 (478)
++++|||+++.++|.|++.. +..+|||++||+|...+..+++.+.+ .++|++|++|+++++
T Consensus 197 DRQTGKTaIAiDTIINQk~~n~~~~k~~~V~CIYVAIGQK~StVA~iv~~L~e------------~gAm~yTiIVaAtAs 264 (574)
T PTZ00185 197 DRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRS------------YGALRYTTVMAATAA 264 (574)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH------------CCCCCCEEEEEECCC
T ss_conf 77655689999999837643446577896699999854128999999999997------------697203089992477
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC----C
Q ss_conf 896787777777877689998669967999715599987601245531144101101223566657888763177----7
Q gi|254780615|r 230 EPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT----L 305 (478)
Q Consensus 230 ~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~----~ 305 (478)
+||.++|.+||+||+|||||||+|+|||+++||||+||.||||+||+++|||+|++||+|+||.||||+||+++. +
T Consensus 265 d~a~lQYLAPYaG~AmaEyFm~~G~dvLIVyDDLSKhA~AYRqmSLLLRRPPGREAYPGDVFYlHSRLLERAaKls~~~G 344 (574)
T PTZ00185 265 EPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKG 344 (574)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCC
T ss_conf 75144232110125777898856984799965807889999998720689999879887661110178888875244569
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
Q ss_conf 65325666543047664410589999750342564115663188675322355431116201289999999999999998
Q gi|254780615|r 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQR 385 (478)
Q Consensus 306 ~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~ 385 (478)
+||||++|+++++++|+|.|||+|++|||||||+|+.+||++|++||||+..|+||+. +..+-+.++++++++|..|++
T Consensus 345 gGSiTALPIIETqaGDvSAYIPTNVISITDGQIfLes~LF~~GiRPAInVGlSVSRVG-saAQ~KAmK~VAG~Lkl~LAQ 423 (574)
T PTZ00185 345 GGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVG-SSAQNVAMKAVAGKLKGILAE 423 (574)
T ss_pred CEEEEECEEEEECCCCEEEEEECCEEEECCCEEEECHHHHHCCCCCCCCCCCCEECCC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 8004642069960785510100125870277188517677379885414685354167-688999999974144588999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC---CCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9989999997365569988999999999999983499---711000057897361599999999999767644689
Q gi|254780615|r 386 YKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQP---FHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLP 458 (478)
Q Consensus 386 y~el~~~i~~~g~~~l~~~~~~~i~r~~~i~~fL~Qp---~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~p 458 (478)
|+|+.. -.++|.. -.....-|+.++..++.|. ||+ ..+.++++-++|.+|+..
T Consensus 424 YRElAA-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 479 (574)
T PTZ00185 424 YRKLAA-DSVGGSQ----VQTVPMIRGARFVALFNQKNPSFFM---------------NALVSLYACLNGYLDDVK 479 (574)
T ss_pred HHHHHH-HCCCCCE----EEEECCCCCCHHHHHHCCCCCHHHH---------------HHHHHHHHHHHCCCHHHH
T ss_conf 999863-3247632----4552001232010114157845999---------------999999998615501542
No 46
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=0 Score=643.63 Aligned_cols=269 Identities=28% Similarity=0.421 Sum_probs=240.7
Q ss_pred ECCHHHHHHHHHHHHHHCC----------CCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 8592376558878752301----------678753001100234544410000134200023110023557021541003
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVD----------DQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGL 154 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLD----------g~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gI 154 (478)
|...+.+++|...-.-++| ++.++.-.++||+..+.| ..+|.++++||+||||+||+|+|||||||++|
T Consensus 84 p~~~G~v~~i~~~g~y~v~~~~~~~~~~g~~~~~~m~q~WPVr~prP-v~er~~~~~PL~TGir~ID~l~Pig~Gqr~~I 162 (369)
T cd01134 84 PRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRP-VKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAI 162 (369)
T ss_pred CCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98737999991589852465699970689846877887077566775-11138999862653568874253214764677
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 67566662489999999885057885268762164345999999854244200122234443323169997176689678
Q gi|254780615|r 155 FGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGA 234 (478)
Q Consensus 155 fgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~ 234 (478)
||++|+|||+|+++++++ .++|+|||++||||+|||.|+++||.+... ...+.+.|+||++|++|||+|+++
T Consensus 163 ~g~~g~GKT~l~~~i~k~---~~~dv~Vyv~iGeRg~ev~e~l~~f~el~~-----~~~g~~~~~rtvvVa~ts~~p~~~ 234 (369)
T cd01134 163 PGPFGCGKTVIQQSLSKY---SNSDIVIYVGCGERGNEMTEVLEEFPELTD-----PVTGEPLMKRTVLIANTSNMPVAA 234 (369)
T ss_pred ECCCCCCHHHHHHHHHHC---CCCCEEEEEEEECCHHHHHHHHHHHHHHCC-----CCCCCCHHHCEEEEECCCCCCHHH
T ss_conf 668776899999999853---799889999971141899999998677413-----334664102036874277799889
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC-------CCC
Q ss_conf 7777777877689998669967999715599987601245531144101101223566657888763177-------765
Q gi|254780615|r 235 RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT-------LKG 307 (478)
Q Consensus 235 r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~-------~~G 307 (478)
|++++|+|+||||||||||+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. +.|
T Consensus 235 r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~e~P~~egYP~~l~s~l~~l~ERag~~~~~~~~~~~G 314 (369)
T cd01134 235 REASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREG 314 (369)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 98889899999999996898879980758999999889988638998765719319988889987214432368999981
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3256665430476644105899997503425641156631886753223554311
Q gi|254780615|r 308 SITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSM 362 (478)
Q Consensus 308 SIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~ 362 (478)
|||+|++|++++||++|||++|+++|+||||+|||+||++||||||||+.|+||.
T Consensus 315 SiT~~~~V~~~ggD~s~pI~~~~~si~d~~i~L~~~La~~g~~PAId~~~S~Sry 369 (369)
T cd01134 315 SVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 1778989975698867757888876621588985889867999971874366588
No 47
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit; InterPro: IPR005726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the alpha subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) and beta (or B) (IPR005724 from INTERPRO), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=607.40 Aligned_cols=424 Identities=26% Similarity=0.436 Sum_probs=376.3
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCH
Q ss_conf 41389999557899981666523141899816995599999987089879999814878887888889779848988592
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGE 88 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~ 88 (478)
..|+|.+|.|++|-+.|+... .+++.+.+.+ .++++||+...++ ...+++|++|.||++|++|..||.+|+|.+|+
T Consensus 1 ~~G~i~~~~GP~v~A~g~~~a-~My~~v~Vg~--~~L~GEi~~~~gd-~~~IQVYE~T~G~~Pge~v~~tG~pLsveLGP 76 (584)
T TIGR01043 1 VKGEIVRVSGPLVVAEGLKGA-QMYEVVKVGE--EGLIGEIIRIEGD-KAVIQVYEETSGIKPGEPVERTGAPLSVELGP 76 (584)
T ss_pred CCCEEEEEECCEEEECCCCCC-CEEEEEEECC--CCCEEEEEEEECC-EEEEEEEECCCCCCCCCCHHCCCCEEEEECCC
T ss_conf 985389975788782455766-3243356707--8503689998277-68999863268889874000289702774350
Q ss_pred HHHHHHHHHHHHHCC-----------------------------------------------------------------
Q ss_conf 376558878752301-----------------------------------------------------------------
Q gi|254780615|r 89 ATLGRIMNVIGEPVD----------------------------------------------------------------- 103 (478)
Q Consensus 89 ~lLGRViD~lG~PLD----------------------------------------------------------------- 103 (478)
+||+.++|++.|||+
T Consensus 77 Gll~~iyDG~QRPL~~l~~~~~~~Fi~RGv~~p~l~~~~~w~F~P~v~~Gd~V~~Gd~~G~V~ET~~i~h~ilvPp~~~g 156 (584)
T TIGR01043 77 GLLGSIYDGVQRPLDVLKEKTGSDFIERGVDAPGLDRDKKWEFKPTVKEGDKVEGGDIIGVVQETSLIEHKILVPPNVEG 156 (584)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCEECCEECCCCEECCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf 04766401224636899986201376658516888753450022212268643476158776376503347773574578
Q ss_pred -----------------------C-CCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf -----------------------6-7875300110023454441000013420002311002355702154100367566
Q gi|254780615|r 104 -----------------------D-QGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAG 159 (478)
Q Consensus 104 -----------------------g-~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~G 159 (478)
| ..++.-.++||+..+.|-- ++.....||-||.|++|+|+|+.||+...|.|++|
T Consensus 157 g~~~~~~~G~ftV~d~i~~~~~~G~~~~~~m~~~WPVR~~RP~~-~K~~P~~PL~tG~R~~Dt~F~~AKGGTAAiPGPFG 235 (584)
T TIGR01043 157 GEIVEIAEGDFTVEDTIAVVEKDGEEEEIKMYQKWPVRKPRPYK-EKLEPEEPLVTGQRILDTLFPIAKGGTAAIPGPFG 235 (584)
T ss_pred CEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf 75778726731465568998227881102464407788888743-57888986121503410102424677545787888
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 66248999999988505788526876216434599999985424420012223444332316999717668967877777
Q gi|254780615|r 160 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239 (478)
Q Consensus 160 vGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~ 239 (478)
.|||+-..+++ +.++++++||+||||||+|++|.+++|.+.. +...+...|+||+||++|||+|.++|..+.
T Consensus 236 sGKTVT~~~LA---kws~a~ivvYiGCGERGNEMt~vl~~FP~l~-----dp~TG~pLm~RT~LiANTSNMPVAAREas~ 307 (584)
T TIGR01043 236 SGKTVTQQQLA---KWSDADIVVYIGCGERGNEMTEVLEEFPELE-----DPKTGKPLMERTVLIANTSNMPVAAREASI 307 (584)
T ss_pred CCCHHHHHHHH---HHHCCCEEEEECCCCCCCHHHHHHHHCCCCC-----CCCCCHHHHHCCEEEECCCCCCHHHHHHHH
T ss_conf 85046777775---4304737999616887525899998487868-----863531565420533526787534401123
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC-------CCCCEEEE
Q ss_conf 77877689998669967999715599987601245531144101101223566657888763177-------76532566
Q gi|254780615|r 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT-------LKGSITSV 312 (478)
Q Consensus 240 ~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~-------~~GSIT~~ 312 (478)
|+|+||||||||+|.||+|+.||.+|||.|.||||..|.|||+.+|||.+|.+.++.+|||||+. +.||||.+
T Consensus 308 Y~GiTiAEYfRD~GYdv~L~ADSTSRWAEA~ReisgRlEEMPgEEGyPaYLasrLaefYERAG~~~~l~~~~~~gsv~v~ 387 (584)
T TIGR01043 308 YTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEREGSVTVV 387 (584)
T ss_pred HHCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEE
T ss_conf 21102533441168516887247521789998752021027787886246888887766514602231688744789999
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCC------EECCHHHHHHHHHHHHHHHHH
Q ss_conf 65430476644105899997503425641156631886753223554311162------012899999999999999989
Q gi|254780615|r 313 QAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI------DIVGQEHYDVARRVQEILQRY 386 (478)
Q Consensus 313 ~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~------~i~~~~h~~~a~~~r~~l~~y 386 (478)
.+|..||+|||+|+..|+.-+..-.+-||.+||+++|||||||+.|.|-..+. .=+.+++.+....+-.+|++-
T Consensus 388 gAVSPPGGDfsEPVt~~TlR~vkvFWaLD~~La~~RHfPaInW~~sySlY~d~~~~W~~~Nv~~~w~~~R~~a~~~L~~E 467 (584)
T TIGR01043 388 GAVSPPGGDFSEPVTQNTLRIVKVFWALDAKLAQRRHFPAINWLQSYSLYVDSVQDWWAENVDPDWRELRDEAMDLLQKE 467 (584)
T ss_pred ECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61477557878862227447898730011788743789730201145776888999987400277999999999997515
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 9899999973655699889999999999999-8349971100005789736159999999999976
Q gi|254780615|r 387 KSLQDIIAILGMDELSEEDKLVVARARKLER-FMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 387 ~el~~~i~~~g~~~l~~~~~~~i~r~~~i~~-fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
.||++++++.|.|.|++.++..++-++.|++ ||+|+.|..-. .|-+.+++...++.|..
T Consensus 468 ~eL~eIV~LVG~d~L~~~~~~~Le~ar~~re~fL~q~Af~~vD------~y~~~~kq~~~l~~I~~ 527 (584)
T TIGR01043 468 AELQEIVQLVGPDALPEKEKLILEVARLIREAFLQQNAFDEVD------TYCSPQKQYRILKAIMK 527 (584)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH------CCCCHHHHHHHHHHHHH
T ss_conf 5677787531775676024578999999999876652043010------35886889999999999
No 48
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=0 Score=565.69 Aligned_cols=431 Identities=26% Similarity=0.367 Sum_probs=386.4
Q ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECC-CCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCE-EEECCCEEE
Q ss_conf 65341389999557899981666523141899816-9955999999870898799998148788878888-897798489
Q gi|254780615|r 6 KTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSD-KGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDC-VIDTGTQIT 83 (478)
Q Consensus 6 ~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~-~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~-V~~tg~~l~ 83 (478)
....+-+|++|.|+++.|++.+.. .-++.+.+.. .|....++|.- .+.+.+.+++|+.|.|+...+. |.++|+++.
T Consensus 3 ~~~~Y~~i~~i~Gplv~ve~~eg~-~y~E~v~i~~~~G~~r~gqVle-~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~ 80 (463)
T COG1156 3 MVKEYTTISEIKGPLIIVEGVEGA-SYGELVEIETPDGEVRRGQVLE-VRGDKAVVQVFEGTSGLDTKGTTVRFTGETLK 80 (463)
T ss_pred CCCEEEEEEEECCCEEEEECCCCC-CCCEEEEEECCCCCEEEEEEEE-CCCCEEEEEEEECCCCCCCCCCEEEEECCEEE
T ss_conf 542023467731544999645677-7643799987998764345753-15864899995044577888855899486378
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 88592376558878752301678753001100234544410000134200023110023557021541003675666624
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
+||++.+|||++|++|+||||.+.+..++...|+++|.||..|....++++|||.+||+|+++.||||..||++||-...
T Consensus 81 i~vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN 160 (463)
T COG1156 81 IPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHN 160 (463)
T ss_pred EEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 76328766544057888478998678775533578878915654726676529608764346533654660127998437
Q ss_pred HHHHHHHHHHHHCC----CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 89999999885057----88526876216434599999985424420012223444332316999717668967877777
Q gi|254780615|r 164 VLIMELINNVAKAH----GGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239 (478)
Q Consensus 164 ~l~~~~i~n~~~~~----~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~ 239 (478)
-|+.++++. ++.. ....||+++|-.-.|.+-|..++.+ .++++|++++.+.+|+|+.+|...|
T Consensus 161 ~LaaqIarQ-A~v~~~~e~favVfaamGit~eea~fF~~~fe~------------tGal~r~vlflnlA~dp~vEri~tP 227 (463)
T COG1156 161 ELAAQIARQ-ATVDGEEEEFAVVFAAMGITHEEALFFMDEFEE------------TGALDRAVLFLNLADDPAVERIITP 227 (463)
T ss_pred HHHHHHHHH-CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH------------HHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf 999999975-366787543058874047318999999988876------------2246666765423678743476131
Q ss_pred HHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC--CCCCEEEEEEEE
Q ss_conf 778776899986-69967999715599987601245531144101101223566657888763177--765325666543
Q gi|254780615|r 240 LTGLTVAEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT--LKGSITSVQAIY 316 (478)
Q Consensus 240 ~~a~tiAEyfrd-~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~--~~GSIT~~~tV~ 316 (478)
..|+|.||||.- +++|||+++.|+|+||.|.||||.+.+|.|+++|||++++++++.+|||||+. ++||||.+|+..
T Consensus 228 r~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlT 307 (463)
T COG1156 228 RMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILT 307 (463)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCEECCCCCCEEEEEEEE
T ss_conf 68999999985257866999970146789999998764143777678861667788999876503305787269877652
Q ss_pred ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECC-----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04766441058999975034256411566318867532235543111620128-----9999999999999998998999
Q gi|254780615|r 317 VPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVG-----QEHYDVARRVQEILQRYKSLQD 391 (478)
Q Consensus 317 ~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~-----~~h~~~a~~~r~~l~~y~el~~ 391 (478)
+|+||+||||||++.+||.|||||||+|..+|+||.||++.|.||+|+. .+| ++|..+++++...|+..+++++
T Consensus 308 MP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~-giG~g~TReDH~~~snql~a~YA~g~d~r~ 386 (463)
T COG1156 308 MPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKD-GIGEGKTREDHGDVSNQLYAAYAEGRDLRE 386 (463)
T ss_pred CCCCCCCCCCCCCCCEECCCEEEEEHHCCCCCCCCCCCCCCCHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 6998767877765553316559997100248867972336127777651-447886644107889999999850240899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCC
Q ss_conf 9997365569988999999999999-98349971100005789736159999999999976764468978976418
Q gi|254780615|r 392 IIAILGMDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVG 466 (478)
Q Consensus 392 ~i~~~g~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g 466 (478)
+.+++|.+.|++.|++.++++...+ +|++|.+++.. +++||++.-|.+|. .+|+..+.-+-
T Consensus 387 l~avvge~aLs~~D~~~l~F~d~FE~~fi~qg~~enr----------sieetLdlgW~lL~----~lp~~el~ri~ 448 (463)
T COG1156 387 LVAVVGEEALSERDRKYLKFADLFEQRFIKQGRYENR----------SIEETLDLGWELLS----ILPESELTRIK 448 (463)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC----------CHHHHHHHHHHHHH----HCCHHHHCCCC
T ss_conf 9987524430335799999999999999863432477----------88999887589987----48787761577
No 49
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=0 Score=566.00 Aligned_cols=423 Identities=27% Similarity=0.412 Sum_probs=372.6
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCH
Q ss_conf 41389999557899981666523141899816995599999987089879999814878887888889779848988592
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGE 88 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~ 88 (478)
..|+|.+|.|++|.++|.... .+++.+.+. ...+.+||+.. +.+.+.+++|++|.||++|++|.+||++++|.+|+
T Consensus 1 ~~G~i~~isGp~V~a~gm~~~-~my~~v~Vg--~~~L~gEiI~i-~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGP 76 (588)
T COG1155 1 VMGKIIRISGPVVVAEGMEGA-KMYDVVKVG--EMGLIGEIIRI-EGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGP 76 (588)
T ss_pred CCCEEEEEECCEEEEECCCCC-CEEEEEEEC--CCCEEEEEEEE-ECCEEEEEEEEECCCCCCCCEEECCCCCEEEEECC
T ss_conf 974699987779998057677-417899975--77505899998-58768999996058999998321279822787475
Q ss_pred HHHHHHHHHHHHHCCC----------------------------------------------------------------
Q ss_conf 3765588787523016----------------------------------------------------------------
Q gi|254780615|r 89 ATLGRIMNVIGEPVDD---------------------------------------------------------------- 104 (478)
Q Consensus 89 ~lLGRViD~lG~PLDg---------------------------------------------------------------- 104 (478)
+||+.|+|++.||||.
T Consensus 77 Gll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~ 156 (588)
T COG1155 77 GLLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGK 156 (588)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEEEECCCCCCEE
T ss_conf 47764443114747999987401754578899888555200034666698752685489860677357998378877628
Q ss_pred ----------------------CCCC--CCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf ----------------------7875--3001100234544410000134200023110023557021541003675666
Q gi|254780615|r 105 ----------------------QGAI--ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 (478)
Q Consensus 105 ----------------------~g~i--~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv 160 (478)
.|.. .--++||+.++.|. .++.+..+||.||.|+||+|+|+.||+...|.|++|+
T Consensus 157 v~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp~-~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGs 235 (588)
T COG1155 157 VTWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARPV-KRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGS 235 (588)
T ss_pred EEEEECCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCC-CCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCC
T ss_conf 999955887156679999952797487888872664677641-0248987752125423101021115765126688889
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 62489999999885057885268762164345999999854244200122234443323169997176689678777777
Q gi|254780615|r 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 (478)
Q Consensus 161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~ 240 (478)
|||++..+++.. ++++++||++|||||+|+.|.+.+|.+... ...+...|+||+++++|||+|.++|..+.|
T Consensus 236 GKTV~qh~laK~---sdadiVVyigCGERGNEmtevL~eFPeL~D-----p~tg~~lm~RT~liaNTSnMPVAAREasIY 307 (588)
T COG1155 236 GKTVSQHTLSKL---ADGDIVIYVGCGERGNEMTEVLQEFPELKD-----PNTGQPLMDRTVLIANTSNMPVAAREASIY 307 (588)
T ss_pred CCEEHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHCCCCCC-----CCCCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 837524356564---068889998157765238999986866668-----999971200036762576661888664353
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC-----CC--CCEEEEE
Q ss_conf 7877689998669967999715599987601245531144101101223566657888763177-----76--5325666
Q gi|254780615|r 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT-----LK--GSITSVQ 313 (478)
Q Consensus 241 ~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~-----~~--GSIT~~~ 313 (478)
+|.|+||||||||.||+++.||.+|||+|.||||..++|+|+.+|||+++.+.+++++||+|.. .. ||+|.++
T Consensus 308 tGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~g 387 (588)
T COG1155 308 TGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIG 387 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEEC
T ss_conf 22319998876302567750138999999998733500288644441678999999998547234227886258999825
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCC------EECCHHHHHHHHHHHHHHHHHH
Q ss_conf 5430476644105899997503425641156631886753223554311162------0128999999999999999899
Q gi|254780615|r 314 AIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI------DIVGQEHYDVARRVQEILQRYK 387 (478)
Q Consensus 314 tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~------~i~~~~h~~~a~~~r~~l~~y~ 387 (478)
+|..+|+|+|+|+..|+..+..-.+-||++||+++||||||++.|.|...+. .=++++..++..+++++|++-.
T Consensus 388 aVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~ 467 (588)
T COG1155 388 AVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRES 467 (588)
T ss_pred CCCCCCCCCCCCCCHHEEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 77899998476521100355664200144453232376567377799989888877640258238999999999988779
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 89999997365569988999999999999-9834997110000578973615999999999997
Q gi|254780615|r 388 SLQDIIAILGMDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 388 el~~~i~~~g~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
|++.++++.|.+.+++.++.++..++.|. .||+|+.|-.-. .|.++.+|...++.|+
T Consensus 468 elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQnafd~vD------~~~~~~kq~~mm~~i~ 525 (588)
T COG1155 468 ELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQNAFDEID------AYCSLRKQYLMLKAIM 525 (588)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCHHHHHHHHHHHH
T ss_conf 999999985742366288899999999998887651567310------1388899999999999
No 50
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=0 Score=559.39 Aligned_cols=241 Identities=23% Similarity=0.339 Sum_probs=225.7
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0231100235570215410036756666248999999988505788-526876216434599999985424420012223
Q gi|254780615|r 134 TTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMIDSKVNIDPRKN 212 (478)
Q Consensus 134 ~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~-v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~ 212 (478)
+.|+|+||+|+|||||||+|||||+|||||+|+.++++++.+++.+ +|||++||||+|||+||++++
T Consensus 1 d~~~r~ID~l~pigkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~------------ 68 (249)
T cd01128 1 ELSTRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV------------ 68 (249)
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH------------
T ss_conf 97410154324616786778878999889999999999999858984999999716579999999971------------
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHH
Q ss_conf 44433231699971766896787777777877689998669967999715599987601245531144101101223566
Q gi|254780615|r 213 NGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLAL 292 (478)
Q Consensus 213 ~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~ 292 (478)
++.+|++|||+||.+|++++|+|+++||||||||+|||++|||+||||+||||+|+..||+++ .||||++|+
T Consensus 69 -------~~~vv~st~d~~p~~r~~~a~~a~~iAEyfr~~G~dVLl~~DslTR~A~A~rEis~~~ge~~~-~g~~~~~~~ 140 (249)
T cd01128 69 -------KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILS-GGVDANALH 140 (249)
T ss_pred -------CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHH
T ss_conf -------616999569999899999999999999999987997799951488999998663024698788-997913545
Q ss_pred HHHHHHHHHCCCC-CCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCH
Q ss_conf 6578887631777-6532566654304-7664410589999750342564115663188675322355431116201289
Q gi|254780615|r 293 EMGELQERITTTL-KGSITSVQAIYVP-ADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQ 370 (478)
Q Consensus 293 ~~~~l~ERag~~~-~GSIT~~~tV~~~-~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~ 370 (478)
.++++.||+++.+ +||||++|||++| +||+++||++++++++||||||||+||++||||||||+.|+||+++ .++++
T Consensus 141 ~~~~~~~~a~~~e~~GSiT~~~tvlve~~d~~d~~I~~~~~~i~Dg~IvLsr~la~~g~yPAIDv~~S~SR~~~-~i~~~ 219 (249)
T cd01128 141 KPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEE-LLLDP 219 (249)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHCCCCCCCCCCCCCCCCCH-HHCCH
T ss_conf 54899985267889953799888876377666726899986517749996399997599986463346210340-10999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999989989999997
Q gi|254780615|r 371 EHYDVARRVQEILQRYKSLQDIIAI 395 (478)
Q Consensus 371 ~h~~~a~~~r~~l~~y~el~~~i~~ 395 (478)
+|++.+.++|++|+.|+++|++-.+
T Consensus 220 ~~~~~a~~~R~~l~~y~~~e~m~~l 244 (249)
T cd01128 220 EELQRMWLLRRVLSDMDPIEAMEFL 244 (249)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999668778999999
No 51
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=100.00 E-value=0 Score=544.08 Aligned_cols=212 Identities=42% Similarity=0.678 Sum_probs=204.2
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 23110023557021541003675666624899999998850578852687621643459999998542442001222344
Q gi|254780615|r 135 TGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNG 214 (478)
Q Consensus 135 TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~ 214 (478)
||||+||+|+|||||||++|||++|+|||+|+.++++|++ .+.+|||++||||+||++||++++.+
T Consensus 1 TGi~~ID~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~--~~~~~V~~~iGer~~ev~~~~~~~~~------------ 66 (213)
T pfam00006 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAK--ADVVEVYVLIGERGREVAEFIEELLG------------ 66 (213)
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHHHHC------------
T ss_conf 9840002016645788877878999988999999998566--18935998137777999999997521------------
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHH
Q ss_conf 43323169997176689678777777787768999866996799971559998760124553114410110122356665
Q gi|254780615|r 215 SAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEM 294 (478)
Q Consensus 215 ~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~ 294 (478)
.+.++||++|++++|+||.+|+++||+|+++||||||||+|||+++||+||||+|+||||+++||||+++||||++|+.|
T Consensus 67 ~~~~~~t~vv~~~~d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~ 146 (213)
T pfam00006 67 EGALKRTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDL 146 (213)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 37665069998468898789999999999999999976996899837805999998765001479985456391788887
Q ss_pred HHHHHHHCCCC-CCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 78887631777-6532566654304766441058999975034256411566318867532235543
Q gi|254780615|r 295 GELQERITTTL-KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360 (478)
Q Consensus 295 ~~l~ERag~~~-~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~S 360 (478)
++|+||||+.+ +||||+||+|++++||++|||++++++++||||+|||+||++|+||||||+.|+|
T Consensus 147 ~~l~ERag~~~~~GSiT~l~tv~~~~~d~~dpi~~~~~~~~dg~ivLsr~la~~g~~PAId~~~S~S 213 (213)
T pfam00006 147 ARLLERAGKVEGGGSITALPTVLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213 (213)
T ss_pred HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCC
T ss_conf 9999875346888634788899804888675156765211355999968999679999728755789
No 52
>KOG1352 consensus
Probab=100.00 E-value=0 Score=533.04 Aligned_cols=429 Identities=24% Similarity=0.409 Sum_probs=367.8
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEE
Q ss_conf 56534138999955789998166652314189981699559999998708987999981487888788888977984898
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITV 84 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~V 84 (478)
.+....|+|-+|.|++|.+...-.. .+++.+.+. ...+++|++. ++.+...+++|++|+|+.+||+|.+||+|++|
T Consensus 16 ~~es~~G~v~~VSGPVV~a~~M~G~-aMYELVrVG--h~~LvGEiIr-legD~aTIQVYEeTsG~tVgDpvlrTgkPLsv 91 (618)
T KOG1352 16 EEESEYGRVYSVSGPVVVAENMAGC-AMYELVRVG--HDELVGEIIR-LEGDMATIQVYEETSGLTVGDPVLRTGKPLSV 91 (618)
T ss_pred HHHHCCCEEEECCCCEEEECCCHHH-HHHHHHHCC--HHHHCEEEEE-ECCCEEEEEEEECCCCCCCCCCHHHCCCCCEE
T ss_conf 2331051488525765750011106-799999713--4753000058-61760379998124885148704315885157
Q ss_pred ECCHHHHHHHHHHHHHHCCCCC----------------------------------------------------------
Q ss_conf 8592376558878752301678----------------------------------------------------------
Q gi|254780615|r 85 PVGEATLGRIMNVIGEPVDDQG---------------------------------------------------------- 106 (478)
Q Consensus 85 pVG~~lLGRViD~lG~PLDg~g---------------------------------------------------------- 106 (478)
.+|++++|.|+|+..|||-...
T Consensus 92 ELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lp 171 (618)
T KOG1352 92 ELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLP 171 (618)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEECCCCEEEECCEEECCCEEEEEECCCHHHCEEECC
T ss_conf 62753676565654334899987508675347877544670000201455044345210571478863120433202148
Q ss_pred --------------------------------CCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf --------------------------------753001100234544410000134200023110023557021541003
Q gi|254780615|r 107 --------------------------------AIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGL 154 (478)
Q Consensus 107 --------------------------------~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gI 154 (478)
...--+.||+..+ -+..+..+-+.||-||.|++|+|+||.+|+...|
T Consensus 172 Pr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~p-RPv~ekl~an~PLltGQRvLDalfPcVqGGTtaI 250 (618)
T KOG1352 172 PRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQP-RPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAI 250 (618)
T ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC-CCHHHCCCCCCCCCCCCHHHHHHCCHHCCCCCCC
T ss_conf 766764899806886521107899873684115778986145777-6411116789964133068875442123886116
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 67566662489999999885057885268762164345999999854244200122234443323169997176689678
Q gi|254780615|r 155 FGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGA 234 (478)
Q Consensus 155 fgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~ 234 (478)
.|..|+|||++.+.+. +..+.|++||++|||||+|+.|.+.++.+..... .-..+..|+||++|++|||+|.++
T Consensus 251 PGAFGCGKTVISQsLS---KYSNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev---~G~~esiMKRT~LVANTSNMPVAA 324 (618)
T KOG1352 251 PGAFGCGKTVISQSLS---KYSNSDAIIYVGCGERGNEMSEVLMDFPELTMEV---DGKTESIMKRTALVANTSNMPVAA 324 (618)
T ss_pred CCCCCCCHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHCHHHEEEC---CCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 7645655477777775---4057876999736665215899987371228634---884214554412210478885044
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC-------CCC
Q ss_conf 7777777877689998669967999715599987601245531144101101223566657888763177-------765
Q gi|254780615|r 235 RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT-------LKG 307 (478)
Q Consensus 235 r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~-------~~G 307 (478)
|..+.|+|+|++|||||||+||-.|.||.+|||.|+||||..|+|+|+..|||+++.+.++.+|||||+. +.|
T Consensus 325 REASIYTGITlsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReG 404 (618)
T KOG1352 325 REASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREG 404 (618)
T ss_pred HHHHHHHCEEHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 32023315069999986276445541544689999998630564186767972788889999998647025437987676
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCC---EE--CCHHHHHHHHHHHHH
Q ss_conf 3256665430476644105899997503425641156631886753223554311162---01--289999999999999
Q gi|254780615|r 308 SITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI---DI--VGQEHYDVARRVQEI 382 (478)
Q Consensus 308 SIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~---~i--~~~~h~~~a~~~r~~ 382 (478)
|+|.+.+|..||+|++||+..++.+|..-.+-||.+||++.|||.||++.|.|+.|.. .+ ..++...+..++|++
T Consensus 405 sVsIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~kei 484 (618)
T KOG1352 405 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEI 484 (618)
T ss_pred EEEEEEEECCCCCCCCCCCHHHHHHEEEEHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 06999862699988677300211200100010247777530388620345189999877777874288764068899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 9989989999997365569988999999999999-9834997110000578973615999999999997
Q gi|254780615|r 383 LQRYKSLQDIIAILGMDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 383 l~~y~el~~~i~~~g~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
|++-.+|.+++++.|...|++.||..++.+..|. .||+|+-|..- ..|-|+-+|+..++.++
T Consensus 485 lq~eedl~eivQLVGK~aLaetdKitLevaklikdDfLqQN~ys~Y------D~~CPfyKt~~Mlrn~i 547 (618)
T KOG1352 485 LQEEEDLSEIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYSPY------DRFCPFYKTVGMLRNII 547 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCH------HHCCCHHHHHHHHHHHH
T ss_conf 7535569999998535542455523123887878888875599824------30480577799999999
No 53
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit; InterPro: IPR005724 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the beta subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) (IPR005726 from INTERPRO), and beta (or B), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=479.14 Aligned_cols=429 Identities=27% Similarity=0.383 Sum_probs=384.0
Q ss_pred CEEEEEEECCEEEEEECCCCCCCCCEEEEC-CCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCC-EEEECCCEEEEECC
Q ss_conf 138999955789998166652314189981-6995599999987089879999814878887888-88977984898859
Q gi|254780615|r 10 VGRIQQIMGAVVDVVFVNSLPPIFSSLETS-DKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGD-CVIDTGTQITVPVG 87 (478)
Q Consensus 10 ~GrV~~V~G~vvev~g~~~~~~i~~~i~~~-~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~-~V~~tg~~l~VpVG 87 (478)
+-.|.+|.|+++-++..... +-.+.+.+. ..|..-.+.|+. ...+.+.+..|+.+.++.... .|..+|+.++++++
T Consensus 2 y~~~~~~~GPl~~v~~~~~~-~y~e~v~~~~~~G~~~~G~vl~-~~~~~~~~~~~~g~~~~~~~~~~v~~~G~~~~~~~~ 79 (458)
T TIGR01041 2 YKTITEIKGPLVIVEGVEPV-AYDEIVEIETPDGEKRRGQVLD-SSEGLAVVQVFEGTTGLDKEATKVRFLGETLKLPVS 79 (458)
T ss_pred CCCCCCCCCCEEEEECCCCC-CCEEEEEEECCCCCCCCCCEEE-CCCCEEEEEEECCHHCCCCCCCEEEEECCEEEEHHH
T ss_conf 65410103756898424321-2100156640578742340353-037657988521110112234178984130242010
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 23765588787523016787530011002345444100001342000231100235570215410036756666248999
Q gi|254780615|r 88 EATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIM 167 (478)
Q Consensus 88 ~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~ 167 (478)
.++||||+++.|+|+|+++.+..++...|.+.+.||..|....+.++|||.+||++.++.||||+.||+++|..+..|+.
T Consensus 80 ~~~lGr~~~g~G~~~d~GP~~~~~~~~~~~G~~~nP~~r~~P~~fiqtG~s~idG~n~l~rG~kl~~fs~sGlP~~~la~ 159 (458)
T TIGR01041 80 EDLLGRILNGSGEPIDGGPEIVPDERRDINGAALNPAAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAA 159 (458)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHCCCHHHHHHCHHHHHHHHHHHCCCCCCEECCCCCCHHHHHH
T ss_conf 78888885026775567765243200023565458432204157875110243212454325421100036887778999
Q ss_pred HHHHHHHHC---CCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999988505---78852687621643459999998542442001222344433231699971766896787777777877
Q gi|254780615|r 168 ELINNVAKA---HGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244 (478)
Q Consensus 168 ~~i~n~~~~---~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~t 244 (478)
++++...-. ..-.+||+++|-+..|...|..++.+ .+++.|.+++.+-+|+|+..|...|..|+|
T Consensus 160 qia~qa~v~~~~~~favvf~a~G~~~~~~~~f~~~f~~------------tGal~r~~~~~~la~~P~~~~~~tP~~alt 227 (458)
T TIGR01041 160 QIARQAKVRGEESEFAVVFAAMGITYEEANFFMKDFER------------TGALERAVVFLNLADDPAVERIVTPRMALT 227 (458)
T ss_pred HHHHHHCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHH------------CCCHHHHEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98863101235532143301022436889999998864------------043211002332026731123310367888
Q ss_pred HHHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCCC
Q ss_conf 6899986-69967999715599987601245531144101101223566657888763177--76532566654304766
Q gi|254780615|r 245 VAEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT--LKGSITSVQAIYVPADD 321 (478)
Q Consensus 245 iAEyfrd-~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~--~~GSIT~~~tV~~~~dD 321 (478)
.|||+.. +..|||+++-|+|+|+.|.||+|.+..|.|+|+|||+++|++++.+|||||+. ++||||.+|+..+|.||
T Consensus 228 ~aeyla~~~d~hvl~il~d~tny~ealr~~~aar~evPGr~GyPGy~y~dla~~yeraG~~~G~~G~~tq~Pil~mP~dd 307 (458)
T TIGR01041 228 LAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATLYERAGRVKGKKGSITQIPILTMPGDD 307 (458)
T ss_pred HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEECCCCCEEEEEEEECCCCC
T ss_conf 99987630676466405557789999987643444078888987237888999987506021476534530034258877
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEE----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4410589999750342564115663188675322355431116201----289999999999999998998999999736
Q gi|254780615|r 322 LTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDI----VGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 322 ~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i----~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
+++||||.+.+|++|||+|+|+|..+|+||+||++.|.||+|...+ .-++|.++..++...|++-+++++++++.|
T Consensus 308 ~thPiPdl~GyiteGqi~~~r~l~~~Gi~PP~~~l~slsrl~~~G~G~G~tr~dh~~~~~q~ya~ya~~~~~r~l~~~vG 387 (458)
T TIGR01041 308 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRDLVAIVG 387 (458)
T ss_pred CCCCCCCCCCEEECCEEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65777643330113534673026517898816788899999743678887424589999888876752456888999860
Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCC
Q ss_conf 5569988999999999999-98349971100005789736159999999999976764468978976418
Q gi|254780615|r 398 MDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVG 466 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g 466 (478)
.+.|++.|+..+.++..++ +|++|...... .+++|++..|.+|. .+|+.++..+.
T Consensus 388 ~~~l~~~d~~~l~fa~~fe~~f~~qg~~~~r----------~i~~tl~~~W~~l~----~lP~~~l~~~~ 443 (458)
T TIGR01041 388 EEALSERDRKYLKFADEFERKFVKQGRKEDR----------SIEETLDLGWELLS----VLPESELKRVK 443 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHHHH----HCCHHHHHHHH
T ss_conf 2455577899999999999999863332010----------17889988899998----51288998999
No 54
>KOG1351 consensus
Probab=100.00 E-value=0 Score=474.67 Aligned_cols=427 Identities=24% Similarity=0.349 Sum_probs=364.9
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCCCEEE-E-CCCCCEEEEEEEEEECCCEEEEEECCCCCCCCC-CCEEEECCCEEEEE
Q ss_conf 41389999557899981666523141899-8-169955999999870898799998148788878-88889779848988
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVNSLPPIFSSLE-T-SDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSR-GDCVIDTGTQITVP 85 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~~~~~i~~~i~-~-~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~-G~~V~~tg~~l~Vp 85 (478)
.+-+|..|.|++|-..-.. . ..+.+++ . ..+|....+.|.-..+++ ..+++|+.|+||.. .+.|.+||..+..|
T Consensus 23 ~y~tv~gvngplvild~vk-f-p~y~eiv~ltlpdgt~r~gqvlev~g~k-avvqvfegtsgid~k~t~~eftg~~lr~p 99 (489)
T KOG1351 23 TYRTVSGVNGPLVILDKVK-F-PKYAEIVNLTLPDGSVRSGQVLEVSGEK-AVVQVFEGTSGIDAKKTTVEFTGEILRTP 99 (489)
T ss_pred EEEEECCCCCCEEEEECCC-C-CCHHHHEEEECCCCCEECCEEEEECCCE-EEEEEECCCCCCCCCCCEEEEECCCCCCC
T ss_conf 6765315677569975256-5-1204306776689871133179960873-58999506666554422688743410365
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
Q ss_conf 59237655887875230167875300110023454441000013420002311002355702154100367566662489
Q gi|254780615|r 86 VGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVL 165 (478)
Q Consensus 86 VG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l 165 (478)
|++.+||||||+-|+|||.++++..+.+..|++.|.||..|-...|+++|||.+||.|..|.||||+.||+.+|..+..+
T Consensus 100 vsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaaglphnei 179 (489)
T KOG1351 100 VSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEI 179 (489)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHH
T ss_conf 56877654426899826889975717761147980894000186999872732776566774267453233378980589
Q ss_pred HHHHHHHHH--H----C----CC--CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 999999885--0----5----78--8526876216434599999985424420012223444332316999717668967
Q gi|254780615|r 166 IMELINNVA--K----A----HG--GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPG 233 (478)
Q Consensus 166 ~~~~i~n~~--~----~----~~--~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~ 233 (478)
+.++++..- | . |. -.+||++.|---...+=|-.++. ..+.|.+++++.+.+|+|..
T Consensus 180 aaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfe------------engsm~~v~lflnlandpti 247 (489)
T KOG1351 180 AAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFE------------ENGSMERVCLFLNLANDPTI 247 (489)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHH------------HCCCCCCEEEEEECCCCCCH
T ss_conf 999988537111688664446676547760031565888899886687------------55870005778741789744
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC--CCCEE
Q ss_conf 8777777787768999866-99679997155999876012455311441011012235666578887631777--65325
Q gi|254780615|r 234 ARSRVALTGLTVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL--KGSIT 310 (478)
Q Consensus 234 ~r~~~~~~a~tiAEyfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~--~GSIT 310 (478)
+|...|..|+|.|||+..| +||||+++.|++.||.|+||+|.+..|.|+|+|||++++++++.+|||||+.+ +||||
T Consensus 248 eriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gsit 327 (489)
T KOG1351 248 ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSIT 327 (489)
T ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 32024035666899998763473899983307789999997776642788678886100247999987333336788546
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEE----CCHHHHHHHHHHHHHHHHH
Q ss_conf 666543047664410589999750342564115663188675322355431116201----2899999999999999989
Q gi|254780615|r 311 SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDI----VGQEHYDVARRVQEILQRY 386 (478)
Q Consensus 311 ~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i----~~~~h~~~a~~~r~~l~~y 386 (478)
.+|+..+|.||+++||||.+..|+.|||+.||+|.++.+||.||+|.|.||+|.+.| .-++|-.+.+++...|+.-
T Consensus 328 qipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~yaig 407 (489)
T KOG1351 328 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIG 407 (489)
T ss_pred EEEEEECCCCCCCCCCCCCCCEEECCEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 41367248876678787645523134588723233256789701166689999987657864353214677889998843
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCC----CCCCCCHH
Q ss_conf 989999997365569988999999999999-983499711000057897361599999999999767----64468978
Q gi|254780615|r 387 KSLQDIIAILGMDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQG----EYDHLPEL 460 (478)
Q Consensus 387 ~el~~~i~~~g~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g----~~d~~pe~ 460 (478)
++.+.+-++.|.+.|+.+|.+.+++-.+.+ +|++|..+... ++-|+++.-|.+|.= -+.-+|+.
T Consensus 408 kdvqamkavvgeeals~ed~l~lefl~kfek~fi~qg~yenr----------tvfesldi~w~llrifpreml~rip~~ 476 (489)
T KOG1351 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFISQGAYENR----------TVFESLDIAWQLLRIFPREMLKRIPAK 476 (489)
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 118999987441006822438999999999877632763320----------377777778999987379998546688
No 55
>TIGR01042 V-ATPase_V1_A V-type ATPase, A subunit; InterPro: IPR005725 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release . V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c, c d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins . This entry represents subunit A from the V1 complex of V-ATPases. There are three copies each of subunits A and B (IPR005723 from INTERPRO), both of which participate in nucleotide binding. However, only subunit A is catalytic, functioning in ATP hydrolysis to drive the rotation of the D and F subunits of V1, as well as the V0 complex c-ring rotor subunit for proton translocation , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=467.88 Aligned_cols=427 Identities=25% Similarity=0.406 Sum_probs=371.8
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCH
Q ss_conf 41389999557899981666523141899816995599999987089879999814878887888889779848988592
Q gi|254780615|r 9 SVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGE 88 (478)
Q Consensus 9 ~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~ 88 (478)
..|.|.+|.|+++.+.-.... ..++.+.+ +...+++|++.. +.+...+..|++|.|+..||.|.+|++|++|.+|+
T Consensus 1 ~~G~~~~vsGPvv~a~~~~G~-~~yelv~v--G~~~l~Ge~irl-~~d~atiqvyeet~G~~v~d~v~rt~~Plsv~lGP 76 (596)
T TIGR01042 1 EYGSIKKVSGPVVVAENMAGA-AMYELVRV--GHEELVGEIIRL-EGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGP 76 (596)
T ss_pred CCCEEEECCCCEEEECCCCCC-HHHHHHHH--CCHHHCEEEEEE-CCCEEEEEEEECCCCEEECCCHHCCCCCCEEECCC
T ss_conf 963266425752340111340-24455550--410001254676-07705898864145504445100037851464062
Q ss_pred HHHHHHHHHHHHHCCCCC--------------------------------------------------------------
Q ss_conf 376558878752301678--------------------------------------------------------------
Q gi|254780615|r 89 ATLGRIMNVIGEPVDDQG-------------------------------------------------------------- 106 (478)
Q Consensus 89 ~lLGRViD~lG~PLDg~g-------------------------------------------------------------- 106 (478)
++++.++|++.|||....
T Consensus 77 G~~~~i~dGiqrPl~~i~~~~~~~yiP~G~~~~~l~~~~~W~f~~~~~~~~G~~~~GGd~~~~v~en~l~~~~~~l~P~~ 156 (596)
T TIGR01042 77 GLLGNIFDGIQRPLKAIAEASQSIYIPRGVNVPALDREKKWEFTPSKKLRVGDHITGGDIYGLVEENSLLKHKILLPPRA 156 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHCEEEECCCC
T ss_conf 04777765654569999862142522467640321111210112101001375002650466541001210102335577
Q ss_pred -----------------------------CCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf -----------------------------753001100234544410000134200023110023557021541003675
Q gi|254780615|r 107 -----------------------------AIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGG 157 (478)
Q Consensus 107 -----------------------------~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg 157 (478)
...-.+.||+..+. +..++..-+.||-||-|++|+|+|+.+|+...|.|.
T Consensus 157 ~G~~~~~a~~G~y~~~~~~le~ef~G~~~~~~~~~~WPvr~~r-P~~~~~~a~~Pll~Gqrvld~lfP~v~GGt~~ipGa 235 (596)
T TIGR01042 157 RGTITYIAPAGEYTVEEKVLEVEFDGKKKKYSMLQVWPVRSPR-PVAEKLAANTPLLTGQRVLDALFPSVQGGTTAIPGA 235 (596)
T ss_pred CCEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCC-CHHHHHCCCCCCEEHHHHHHHHCCCCCCCCEEECCC
T ss_conf 6207997358760110035765424730002454432666656-403431357861101467775433326774120356
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHH
Q ss_conf 66662489999999885057885268762164345999999854244200122234443323169997176689678777
Q gi|254780615|r 158 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSR 237 (478)
Q Consensus 158 ~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~ 237 (478)
.|+|||++.+.+. +..+.|.+||++|||||.|+.|.+.++.+..... ..-.....|+||.+|++|+|.|..+|..
T Consensus 236 fGCGktvisq~ls---kysnsd~i~yvGCGerGnem~evl~~fP~l~~~~--~~G~~~~imkrt~lvantsnmPvaarea 310 (596)
T TIGR01042 236 FGCGKTVISQSLS---KYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEV--PDGREESIMKRTTLVANTSNMPVAAREA 310 (596)
T ss_pred CCCCHHHHHHHHH---HHCCCCEEEEEECCCCCHHHHHHHHHCHHHEEEE--CCCCCCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 5653257665555---3214761799606875126899986320305740--4787420233332210024675022111
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC-------CCCCEE
Q ss_conf 7777877689998669967999715599987601245531144101101223566657888763177-------765325
Q gi|254780615|r 238 VALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT-------LKGSIT 310 (478)
Q Consensus 238 ~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~-------~~GSIT 310 (478)
+.|+|+|+||||||+|.+|-++.||.+|||+|.||||..++|+|+..|||.++.+.++.++||+|+. +.||+|
T Consensus 311 siytGitl~eyfrd~G~~~~m~ads~srWaealreisGrl~emPad~GyPayl~a~lasfye~~G~~~~~G~P~r~G~v~ 390 (596)
T TIGR01042 311 SIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVS 390 (596)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEE
T ss_conf 23300257677763287267753440368999987631332166677850678878887763057145404888651068
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCC---E--ECCHHHHHHHHHHHHHHHH
Q ss_conf 6665430476644105899997503425641156631886753223554311162---0--1289999999999999998
Q gi|254780615|r 311 SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI---D--IVGQEHYDVARRVQEILQR 385 (478)
Q Consensus 311 ~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~---~--i~~~~h~~~a~~~r~~l~~ 385 (478)
.+.+|..+|+|++||+..++.+|..-.+-||++||++.|||.||++.|.|+.+.. . -...+...+..++|.+|++
T Consensus 391 iv~avsP~GGdfsdPvt~atl~i~qvfWGldkklaqrkh~Ps~n~~~sys~y~~~l~~~y~~~~~~f~~lr~~~~~~l~~ 470 (596)
T TIGR01042 391 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLRALEEFYEKNYPEFVSLRTKIKEILQE 470 (596)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99730689887565212445444354331235666421576044533278999999987531030379999999999740
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 9989999997365569988999999999999-98349971100005789736159999999999976
Q gi|254780615|r 386 YKSLQDIIAILGMDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 386 y~el~~~i~~~g~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
-.++++++++.|.+.|++.+|..++.+..|+ .||+|+-|..-. ++-|+-+++..++.++.
T Consensus 471 ~~~l~~~vqlvGk~~l~~~dk~~l~~a~~~~~d~l~qn~~~~yd------~~CP~yk~~~m~~~~~~ 531 (596)
T TIGR01042 471 EEELEEIVQLVGKSALAETDKITLEVAKLIKEDFLQQNGYSKYD------KFCPFYKTVGMLRNLIA 531 (596)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH------CCCCHHHHHHHHHHHHH
T ss_conf 34589999984113201345102468999998765313653012------23624889999999999
No 56
>TIGR01040 V-ATPase_V1_B V-type ATPase, B subunit; InterPro: IPR005723 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release . V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c, c d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins . This entry represents subunit B from the V1 complex of V-ATPases. There are three copies each of subunits A (IPR005725 from INTERPRO) and B, both of which participate in nucleotide binding. However, only subunit A is catalytic for ATP hydrolysis, subunit B being noncatalytic , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0008553 hydrogen-exporting ATPase activity phosphorylative mechanism, 0015988 energy coupled proton transport against electrochemical gradient, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=435.48 Aligned_cols=417 Identities=24% Similarity=0.344 Sum_probs=361.8
Q ss_pred CEEEEEEECCEEEEEECCCCCCCCCEEE-EC-CCCCEEEEEEEEEECCCEEEEEECCCCCCCCC-CCEEEECCCEEEEEC
Q ss_conf 1389999557899981666523141899-81-69955999999870898799998148788878-888897798489885
Q gi|254780615|r 10 VGRIQQIMGAVVDVVFVNSLPPIFSSLE-TS-DKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSR-GDCVIDTGTQITVPV 86 (478)
Q Consensus 10 ~GrV~~V~G~vvev~g~~~~~~i~~~i~-~~-~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~-G~~V~~tg~~l~VpV 86 (478)
+-.|..|.|++|-+.-... ..+.++. +. .++....+.|.-..+++ ..+..|+.|.||.. .+.+..+|..+++||
T Consensus 2 y~~~~~v~GPlv~l~~v~~--~~~~eiv~~~l~~g~~r~Gqvle~~~~~-a~vqvfeGt~G~d~~~~~~~~~G~~l~~~~ 78 (464)
T TIGR01040 2 YKTVSGVNGPLVILENVKF--PKFAEIVNLTLPDGTVRKGQVLEVSGEK-AVVQVFEGTSGIDAKKTTVEFTGDILRLPV 78 (464)
T ss_pred CCEECCCCCCEEEEHHCCC--CCCEEEEEEEECCCCCCCCEEEEEECCC-EEEEEECCCCCCCCCCCEEEECCHHHHHHH
T ss_conf 6200004664423001055--1200046676167861233057760772-089982476441222314554210231122
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHH
Q ss_conf 92376558878752301678753001100234544410000134200023110023557021541003675666624899
Q gi|254780615|r 87 GEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLI 166 (478)
Q Consensus 87 G~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~ 166 (478)
++++||||+|+-|.|||..+++..+++..+.+.+.||..|....|+++|||.+||.|..+.||||+.||+.+|..+..+.
T Consensus 79 s~~mlGr~f~GsG~~id~gP~~l~~~y~d~~G~~inP~~r~yP~em~~tG~s~id~~~si~rGqkiP~fsa~GlPhne~a 158 (464)
T TIGR01040 79 SEDMLGRVFNGSGKPIDKGPKVLAEDYLDINGQPINPQARIYPEEMIQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIA 158 (464)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHHH
T ss_conf 04531011036775223565310354411478645862114738898502025665666543653312304788635678
Q ss_pred HHHHHHHHH---------CCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHH
Q ss_conf 999998850---------57885268762164345999999854244200122234443323169997176689678777
Q gi|254780615|r 167 MELINNVAK---------AHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSR 237 (478)
Q Consensus 167 ~~~i~n~~~---------~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~ 237 (478)
.++++...- .+.-.+||+++|---...+=|-.++. ..+.|++++++.+-+|+|..+|..
T Consensus 159 aqi~rq~~lv~~~~~~~~~~~f~~vf~amGvn~e~a~ff~~df~------------~~G~~~~~~lflnlandPt~eri~ 226 (464)
T TIGR01040 159 AQICRQAGLVKKDVKDGHEDNFAIVFAAMGVNLETARFFKQDFE------------ENGSMERVTLFLNLANDPTIERII 226 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHH------------HCCCHHHEEEEEEECCCCCCHHHH
T ss_conf 88888778888876402234315652001010578899988675------------347710135665414785301220
Q ss_pred HHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC--CCCEEEEEE
Q ss_conf 77778776899986-699679997155999876012455311441011012235666578887631777--653256665
Q gi|254780615|r 238 VALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL--KGSITSVQA 314 (478)
Q Consensus 238 ~~~~a~tiAEyfrd-~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~--~GSIT~~~t 314 (478)
.|..|+|.|||+.. .++|||+++.|++.||.|.||+|.+..|.|+|+|||++++++++.++||||+.. +||||.+|+
T Consensus 227 tPr~al~~ae~lay~~~~hvl~iltd~ssya~alrevsaareevPgrrG~PGymy~dl~~iyeraGrv~Gr~Gsitq~Pi 306 (464)
T TIGR01040 227 TPRLALTTAEYLAYECEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPI 306 (464)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 00367777877765247607998503357999998776555406777888732577789987630421167664242002
Q ss_pred EEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEE----CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43047664410589999750342564115663188675322355431116201----28999999999999999899899
Q gi|254780615|r 315 IYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDI----VGQEHYDVARRVQEILQRYKSLQ 390 (478)
Q Consensus 315 V~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i----~~~~h~~~a~~~r~~l~~y~el~ 390 (478)
..+|.||+++||||.+..|++|||+++|.|.++.+||+||++.|.||+|...+ .-++|..+++++...++.-++..
T Consensus 307 ltmPnddithPiPdltGyitegqiy~dr~l~~~~iyPPi~vlPslsrlmk~aiG~gmtr~dh~~vs~qly~~~~~~~d~~ 386 (464)
T TIGR01040 307 LTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAKYAIGKDVA 386 (464)
T ss_pred EECCCCCCCCCCCCCCCEEECCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42576445677653211022242455101430557883235566899988752353101247889999998888887899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 99997365569988999999999999-98349971100005789736159999999999976
Q gi|254780615|r 391 DIIAILGMDELSEEDKLVVARARKLE-RFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 (478)
Q Consensus 391 ~~i~~~g~~~l~~~~~~~i~r~~~i~-~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~ 451 (478)
.+-++.|.+.|+.+|...++...+.+ +|+.|..|... .+-+.++..|.+|.
T Consensus 387 amkavvG~eal~~~d~l~l~f~~~fe~~f~~qg~y~~r----------~~~~~ld~~W~llr 438 (464)
T TIGR01040 387 AMKAVVGEEALSSEDLLYLEFLEKFEKKFIAQGAYENR----------TIFESLDLAWELLR 438 (464)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHH----------HHHHHHHHHHHHHH
T ss_conf 99887402221413112457888998877512652102----------68988988899999
No 57
>KOG1353 consensus
Probab=100.00 E-value=0 Score=375.61 Aligned_cols=317 Identities=21% Similarity=0.313 Sum_probs=280.3
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
.+.+..+++|+|.+|.+++.+|.|+++.- -++++.+.+|-+ ++..|++.++|.++.|++..-++.|+.|.+|+..
T Consensus 13 ~~~a~leEtg~VLsIGdGIArV~GL~nvQ--AeE~vEFssGlK---gmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaI 87 (340)
T KOG1353 13 NTSADLEETGRVLSIGDGIARVYGLTNVQ--AEEMVEFSSGLK---GMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAI 87 (340)
T ss_pred CCCCCHHHCCCEEEECCCEEEEECCCCCC--HHHHHHHHCCCC---CHHCCCCCCCEEEEEECCCCEECCCCEEEEEEEE
T ss_conf 66555444363678747340221533003--677885632432---1002566771589997574022147558966665
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
..||+|+.|||||+|++|||+||+||+...+++ +..|..+.+|++||+|++|.+.|||||||++|+|++++|
T Consensus 88 vDVpvg~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~sv~epmqtg~KAvdslVpigRgqrELiIgdRqTG 159 (340)
T KOG1353 88 SDVPPLKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTG 159 (340)
T ss_pred ECCCCHHHHHHHHHHHHCCEECCCCCCCCCCCC--------CCCCEEEECHHHHHHHHHHCEEEECCCCEEEEECCCCCC
T ss_conf 126716777522045306743588875632123--------245312405236666686602103358567873156668
Q ss_pred HHHHHHHHHHHHHHCCC-------CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 24899999998850578-------85268762164345999999854244200122234443323169997176689678
Q gi|254780615|r 162 KTVLIMELINNVAKAHG-------GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGA 234 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~-------~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~ 234 (478)
||.|..+++.|++..+. -.|||++||++-..|..++..+.+ .++|++|++|++|++
T Consensus 160 kTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~------------~~a~~y~ivv~atas----- 222 (340)
T KOG1353 160 KTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEE------------ADAMEYSIVVAATAS----- 222 (340)
T ss_pred CEEEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH------------CCCCEEEEEEEEECC-----
T ss_conf 545410444454641234343350799999606104089999988875------------587227999985013-----
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 77777778776899986699679997155999876012455311441011012235666578887631777653256665
Q gi|254780615|r 235 RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQA 314 (478)
Q Consensus 235 r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~t 314 (478)
T Consensus 223 -------------------------------------------------------------------------------- 222 (340)
T KOG1353 223 -------------------------------------------------------------------------------- 222 (340)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43047664410589999750342564115663188675322355431116201289999999999999998998999999
Q gi|254780615|r 315 IYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIA 394 (478)
Q Consensus 315 V~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~ 394 (478)
+++|++.|||+|++|| ||||+|+.+||.+|++||||+..|+||+.. ....+.++++++.++..|++|+|...|.+
T Consensus 223 ---q~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgs-aaq~kamkqvag~~klelaq~revaafaq 297 (340)
T KOG1353 223 ---QAGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGS-AAQTKAMKQVAGSLKLELAQYREVAAFAQ 297 (340)
T ss_pred ---CCCCEEEECCCCEEEE-CCHHHHHHHHHHHCCCHHHEEEEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---5666246625432455-325677788877156334242057441154-67788999873042237877888999987
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHH
Q ss_conf 736556998899999999999998349971100005789736159999999
Q gi|254780615|r 395 ILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRG 445 (478)
Q Consensus 395 ~~g~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~ 445 (478)
++ . +|+..+++.+.|+.|+.++|+|+.| .+..+||++..
T Consensus 298 fg-s-dlda~tq~~l~rg~rltellkq~qy----------~p~~~e~qv~~ 336 (340)
T KOG1353 298 FG-S-DLDAATQQLLNRGVRLTELLKQGQY----------APLAIEEQVAV 336 (340)
T ss_pred HC-C-CCCHHHHHHHHHHHHHHHHHHCCCC----------CCCCHHHHEEE
T ss_conf 43-5-3047899999760679999845788----------98212332024
No 58
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=0 Score=349.63 Aligned_cols=295 Identities=23% Similarity=0.279 Sum_probs=235.0
Q ss_pred CCCCCCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHCCCCC-CCCCHHHHCCCCCCCCCHHHCC---CCCCCCCCCCCC
Q ss_conf 878887888889779848988592376558878752301678-7530011002345444100001---342000231100
Q gi|254780615|r 65 RTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQG-AIISSEKRAIHQPSPSYTEQST---DASILTTGIKVI 140 (478)
Q Consensus 65 ~t~GI~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PLDg~g-~i~~~~~~pi~~~~p~~~~R~~---i~e~L~TGIkaI 140 (478)
.-.+++.||.|...-++.+ -|+ -|-+|-..-|.+.+..- -+..+... |..|.+|-. -.+.+.| |+|
T Consensus 54 rrf~LR~GD~V~G~iR~p~--~ge-aL~~V~~VNg~~pe~~~~R~~F~~LT-----Pi~P~erl~LE~~~~~~s~--Rii 123 (379)
T PRK12608 54 RRFGLRTGDLVEGVIRAPR--EKE-TLVRIDSVNGTDPEKLQRRKHFDDLT-----PLHPEERIVLETGSDDLSM--RVL 123 (379)
T ss_pred HHCCCCCCCEEEEEECCCC--CCH-HHEEEHHCCCCCHHHHCCCCCCCCCC-----CCCCCCEEECCCCCCCCCC--CEE
T ss_conf 7549999998999863899--874-20414523894989955746755687-----7799650440148876441--103
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 23557021541003675666624899999998850578852687-62164345999999854244200122234443323
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGS 219 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~ 219 (478)
|.+.|||||||.+|++++++|||+|+++|++.+.++|.++.+++ +|+||++||+||....
T Consensus 124 DL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDERPEEVTdm~r~v------------------- 184 (379)
T PRK12608 124 DLVAPIGKGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDERPEEVTDMKRSV------------------- 184 (379)
T ss_pred EEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHC-------------------
T ss_conf 1004634574012745898657899999999998579984899998168935888888623-------------------
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH
Q ss_conf 16999717668967877777778776899986699679997155999876012455311441011012235666578887
Q gi|254780615|r 220 KCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQE 299 (478)
Q Consensus 220 ~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~E 299 (478)
+..+|++|+|+||-.+.+++..++..|++++++|+||++++||+||+|+|||.++...||..+ .|.++. +-..|+.+.
T Consensus 185 ~gEVvaSTfD~~~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRAyn~~~~~sGr~ls-gg~d~~-al~~pk~~F 262 (379)
T PRK12608 185 KGEVYASTFDRPYDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARAYNSEVDSSGRTLS-GGVDAR-ALERPKRLF 262 (379)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCHH-HHHHHHHHH
T ss_conf 707999779899899999999999999999876996899965177889987533688886157-786956-750068985
Q ss_pred HHCCC--CCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHH
Q ss_conf 63177--76532566654304-7664410589999750342564115663188675322355431116201289999999
Q gi|254780615|r 300 RITTT--LKGSITSVQAIYVP-ADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVA 376 (478)
Q Consensus 300 Rag~~--~~GSIT~~~tV~~~-~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a 376 (478)
.|+++ ++||+|.++|++++ |.++.|+|.++..+..+++|+|||+||++++|||||+.+|.+|- +....+++.++..
T Consensus 263 gaar~ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r~fPAIdi~~SgTR~-EelLl~~~e~~~~ 341 (379)
T PRK12608 263 GAARKIEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRR-EELLLDSKELEKV 341 (379)
T ss_pred HHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCCH-HHHCCCHHHHHHH
T ss_conf 312577788663256666322666434588999632686089972557767887511554577622-6654899999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999998998999
Q gi|254780615|r 377 RRVQEILQRYKSLQD 391 (478)
Q Consensus 377 ~~~r~~l~~y~el~~ 391 (478)
..+|+.|+.-...+.
T Consensus 342 ~~lRr~l~~~~~~ea 356 (379)
T PRK12608 342 RLLRRALASLKPVEA 356 (379)
T ss_pred HHHHHHHCCCCHHHH
T ss_conf 999998617997999
No 59
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=5.8e-42 Score=294.29 Aligned_cols=292 Identities=22% Similarity=0.287 Sum_probs=217.9
Q ss_pred CCCCCCCCEEEECCCEEEEECCHH--HHHHHHHHHHHHCCCCCCCCCHHHHCCC--CCCCCCHHHCCC---CCCCCCCCC
Q ss_conf 788878888897798489885923--7655887875230167875300110023--454441000013---420002311
Q gi|254780615|r 66 TDGLSRGDCVIDTGTQITVPVGEA--TLGRIMNVIGEPVDDQGAIISSEKRAIH--QPSPSYTEQSTD---ASILTTGIK 138 (478)
Q Consensus 66 t~GI~~G~~V~~tg~~l~VpVG~~--lLGRViD~lG~PLDg~g~i~~~~~~pi~--~~~p~~~~R~~i---~e~L~TGIk 138 (478)
--+++.||.|...-++.+= |+. -|=+|--.-|.+.+ ....++-+ -.|..|.+|-.. .+.+.| |
T Consensus 89 rf~LR~GD~V~G~vR~pke--~Ery~aLl~V~~VNg~~pe------~~~~r~~F~~LTPi~P~erl~LE~~~~~~s~--R 158 (416)
T PRK09376 89 RFNLRTGDTVEGKIRPPKE--GERYFALLKVETVNGEDPE------KARNRILFENLTPLYPNERLKLETGTEDLST--R 158 (416)
T ss_pred HHCCCCCCEEEEEEECCCC--CCCCCCEEEEEECCCCCHH------HHCCCCCCCCCCCCCCHHHHCCCCCCCCCCC--C
T ss_conf 8099888889998868988--8877433776322893989------9657354014877797223114568876540--0
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0023557021541003675666624899999998850578852687-621643459999998542442001222344433
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAV 217 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~ 217 (478)
+||.+.|||||||.+|++++.+|||+|+++|++.+..+|.++.+++ +|+||..||+||-...
T Consensus 159 iiDL~aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDERPEEVTdm~r~v----------------- 221 (416)
T PRK09376 159 VIDLVAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSV----------------- 221 (416)
T ss_pred CEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHC-----------------
T ss_conf 211005413585003756998754799999999998569971999999048934777877504-----------------
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCH-----HHHCCHHHHH
Q ss_conf 23169997176689678777777787768999866996799971559998760124553114410-----1101223566
Q gi|254780615|r 218 GSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPS-----AVGYQSTLAL 292 (478)
Q Consensus 218 ~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~-----~~gYp~~~f~ 292 (478)
+.-+|++|.|+||-.+.+++..++.-|..+.++|+||++++||+||+|+||+.+....||.-+ .-=|+|.-|.
T Consensus 222 --~~eV~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~lsGG~D~~Al~~PKrfF 299 (416)
T PRK09376 222 --KGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFF 299 (416)
T ss_pred --CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHH
T ss_conf --618999779998789999999999999999876997899973157888886234699877544765777760556764
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEECCC-CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHH
Q ss_conf 6578887631777653256665430476-644105899997503425641156631886753223554311162012899
Q gi|254780615|r 293 EMGELQERITTTLKGSITSVQAIYVPAD-DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQE 371 (478)
Q Consensus 293 ~~~~l~ERag~~~~GSIT~~~tV~~~~d-D~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~ 371 (478)
--+|-.| ++||+|.+.|++++.+ -+.|.|-.+..+.-+..++|||+|+++++|||||+.+|.+|- +....+++
T Consensus 300 GAARnie-----~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ldr~la~~RifPAIdi~~SgTRk-EelLl~~~ 373 (416)
T PRK09376 300 GAARNIE-----EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRK-EELLLSPE 373 (416)
T ss_pred HHHCCCC-----CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCH-HHHCCCHH
T ss_conf 1002677-----67517787777752686253899998515784599987667757886401333577725-76537999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999989989999
Q gi|254780615|r 372 HYDVARRVQEILQRYKSLQDI 392 (478)
Q Consensus 372 h~~~a~~~r~~l~~y~el~~~ 392 (478)
+++....+|+.|+.....+.+
T Consensus 374 e~~~~~~lRr~l~~~~~~ea~ 394 (416)
T PRK09376 374 ELQKVWILRKILSPMDEVEAM 394 (416)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999987159979999
No 60
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=2.6e-38 Score=270.31 Aligned_cols=245 Identities=23% Similarity=0.331 Sum_probs=201.2
Q ss_pred CCCCHHHCCC-CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHH
Q ss_conf 4441000013-4200023110023557021541003675666624899999998850578852687-6216434599999
Q gi|254780615|r 120 SPSYTEQSTD-ASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLY 197 (478)
Q Consensus 120 ~p~~~~R~~i-~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~ 197 (478)
|..|.+|-.. +++-..--|+||++.|||||||-+|++++..|||+||++|++.+..+|.++.+++ ||.||..||+||-
T Consensus 381 p~~P~erl~le~~~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~ 460 (667)
T PRK12678 381 PLYPNERLRLETEPNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ 460 (667)
T ss_pred CCCCCCEEECCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 78986422334677653222301113567884546757997872599999999998569972899997378851566766
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 98542442001222344433231699971766896787777777877689998669967999715599987601245531
Q gi|254780615|r 198 HEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALL 277 (478)
Q Consensus 198 ~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~ 277 (478)
..+ +.-||++|.|+||-.+.+++..++--|.-+-++|+||++++|||||+|+||+-..-..
T Consensus 461 r~v-------------------~geViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~s 521 (667)
T PRK12678 461 RSV-------------------KGEVIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS 521 (667)
T ss_pred HCC-------------------CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCC
T ss_conf 404-------------------6069986688988889999999999999987569977999640668888760446998
Q ss_pred CCCCH-----HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCE----EEEEHHHHHCC
Q ss_conf 14410-----1101223566657888763177765325666543047664410589999750342----56411566318
Q gi|254780615|r 278 GRIPS-----AVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDAT----TVLSRQISEKG 348 (478)
Q Consensus 278 g~~P~-----~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~----ivLsr~la~~g 348 (478)
|+.-+ .-=|||.-|.--++-+| ++||+|.|.|.||+.+.-.|-+ +|..+.|+ ++|||+|++++
T Consensus 522 Gr~lsGGvD~~Al~~PKrffGAARnie-----~GGSLTIlaTaLveTGSrmDev---IfeEFKGTGNmEl~LdR~la~~R 593 (667)
T PRK12678 522 GRILSGGVDSTALYPPKRFFGAARNIE-----NGGSLTIIATALVETGSTMDTV---IFEEFKGTGNAELKLDRKIADKR 593 (667)
T ss_pred CCCCCCCCCHHHHHCHHHHHHHHHCCC-----CCCCHHHHHHHHHCCCCHHHHH---HHHHHCCCCCEEEEECHHHHHCC
T ss_conf 773467648676601077767775247-----6744767544553046506788---99885376642888623356455
Q ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86753223554311162012899999999999999989989999
Q gi|254780615|r 349 IYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDI 392 (478)
Q Consensus 349 ~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~ 392 (478)
+|||||+..|.+|- +..+.+++.++.+.++|+.|+.....+.+
T Consensus 594 ifPAidi~~SgTR~-eelLl~~~e~~~~~~lRr~l~~~~~~~a~ 636 (667)
T PRK12678 594 VFPAVDVNPSGTRK-EELLLSPDELAIVHKLRRVLSGLDSQQAI 636 (667)
T ss_pred CCCCCCCCCCCCCH-HHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 65311344577506-76537999999999999987259989999
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=2.3e-37 Score=264.09 Aligned_cols=240 Identities=24% Similarity=0.367 Sum_probs=197.2
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHC
Q ss_conf 000134200023110023557021541003675666624899999998850578852687-6216434599999985424
Q gi|254780615|r 125 EQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDS 203 (478)
Q Consensus 125 ~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~ 203 (478)
++.+...-+.| |+||.+.|||||||.+|.+++..|||+|++++++.+..+|.++..++ +|.||..||+|+-+..
T Consensus 151 E~~~~~~~ls~--RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV--- 225 (422)
T COG1158 151 ERENGSTDLST--RVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSV--- 225 (422)
T ss_pred CCCCCCCCCHH--HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHH---
T ss_conf 04788765026--6766526567884656866987873389999999986379964999999347806777788752---
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 42001222344433231699971766896787777777877689998669967999715599987601245531144101
Q gi|254780615|r 204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSA 283 (478)
Q Consensus 204 ~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~ 283 (478)
+..+|++|.|+||--+.++|...+--|.-.-++|+||.+++||+||+|+||+-+.-..|+.-+
T Consensus 226 ----------------~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLs- 288 (422)
T COG1158 226 ----------------KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS- 288 (422)
T ss_pred ----------------CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEC-
T ss_conf ----------------406986448886054689999999999988871786899965677899885366799777404-
Q ss_pred HHCCHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCE----EEEEHHHHHCCCCCCCCCCCC
Q ss_conf 101223566657888763177-765325666543047664410589999750342----564115663188675322355
Q gi|254780615|r 284 VGYQSTLALEMGELQERITTT-LKGSITSVQAIYVPADDLTDPAPATSFTHLDAT----TVLSRQISEKGIYPAIDPLDS 358 (478)
Q Consensus 284 ~gYp~~~f~~~~~l~ERag~~-~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~----ivLsr~la~~g~~PAId~~~S 358 (478)
.|--+.-++.-.++.--|-|. ++||+|.+.|.+++.+.-.|-+ +|..+.|+ ++|||+||++++|||||+.+|
T Consensus 289 GGvD~nAL~~PKrFFGAARNIEeGGSLTIiATALVdTGSrMDeV---IfEEFKGTGNmEl~LdR~laerRifPAIdi~kS 365 (422)
T COG1158 289 GGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEV---IFEEFKGTGNMELHLDRKLAERRIFPAIDINKS 365 (422)
T ss_pred CCCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHH---HHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCC
T ss_conf 87385660483554212205545863411111244147751120---253425777507886013444124530203567
Q ss_pred CCCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43111620128999999999999999899899
Q gi|254780615|r 359 NSSMLEIDIVGQEHYDVARRVQEILQRYKSLQ 390 (478)
Q Consensus 359 ~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~ 390 (478)
.+|- +....++++.+-.-.+|++++.-.+.+
T Consensus 366 GTRk-EeLLl~~~~l~k~w~lRr~l~~md~~~ 396 (422)
T COG1158 366 GTRK-EELLLSPDELQKMWVLRRILSPMDEID 396 (422)
T ss_pred CCCH-HHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 7615-765489999999999999736787489
No 62
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.96 E-value=2.4e-28 Score=204.91 Aligned_cols=161 Identities=32% Similarity=0.458 Sum_probs=146.4
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10036756666248999999988505788526876216434599999985424420012223444332316999717668
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
.++|||++|+|||+|+.+++.|+++ +++.|+|+.++|+.+|+.+++..+. ....++++.++.+++++
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~~~q~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 67 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGES------------LKGALDNLIIVFATADD 67 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHH------------CCCCCCEEEEEECCCCC
T ss_conf 9899989999899999999999876-3997999986664489999999862------------24671307999359997
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 96787777777877689998669967999715599987601245531144101101223566657888763177765325
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT 310 (478)
++.++.. +++++|++++++||+++||+|+|++|+||+ +.|||+.++..+++|+|||+ +++||
T Consensus 68 ~~~~~~~------~~~~~~~~~~~~vliiiDSit~~~~a~~e~---------~~g~~~~v~~~~~~L~~~Ak---~~~it 129 (165)
T cd01120 68 PAAARLL------SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR---KGGVT 129 (165)
T ss_pred CHHHHHH------HHHHHHHHCCCCEEEEEECHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHH---CCCCE
T ss_conf 6999999------999999986997799992889988774001---------58867899999999999997---79828
Q ss_pred EEEEEEECCCCCCCH----HHHHHHHHCCCEEEEEH
Q ss_conf 666543047664410----58999975034256411
Q gi|254780615|r 311 SVQAIYVPADDLTDP----APATSFTHLDATTVLSR 342 (478)
Q Consensus 311 ~~~tV~~~~dD~~dp----i~~~~~si~Dg~ivLsr 342 (478)
.|++..++.||.++| ++.++..++|++|+|+|
T Consensus 130 vi~i~~v~~d~~~~~~~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 130 VIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCEEEEEEC
T ss_conf 999998433778997725388888364266999839
No 63
>TIGR00767 rho transcription termination factor Rho; InterPro: IPR004665 Members of this family have a related but highly variable long, highly charged insert near the amino end. The proteins differ in the specificity of RNA binding.; GO: 0003715 transcription termination factor activity, 0005524 ATP binding, 0006353 transcription termination.
Probab=99.86 E-value=1.3e-20 Score=154.07 Aligned_cols=241 Identities=21% Similarity=0.299 Sum_probs=201.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE-EEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 200023110023557021541003675666624899999998850578852-6876216434599999985424420012
Q gi|254780615|r 131 SILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-VFAGVGERTREGNDLYHEMIDSKVNIDP 209 (478)
Q Consensus 131 e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~-V~~~iGER~rEv~e~~~e~~~~~~~~~~ 209 (478)
.+-...-+++|.+.|+|+|||..|.+++..|||+++..+++.+..++.++. ++.++.||..|+.++....
T Consensus 155 ~~~~~~~~~~~~~~p~g~g~~~l~~~pp~~g~~~~~~~~~~~~~~~~p~~~l~~~l~d~~p~~~~~~~~~~--------- 225 (420)
T TIGR00767 155 DPEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIANAITRNHPEVELIVLLIDERPEEVTDLQRSV--------- 225 (420)
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHH---------
T ss_conf 51146778887651036775303651775442688888887763268743799886336622567777764---------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHH
Q ss_conf 22344433231699971766896787777777877689998669967999715599987601245531144101101223
Q gi|254780615|r 210 RKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQST 289 (478)
Q Consensus 210 ~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~ 289 (478)
+.-++.++.|+||......+...+.-|...-+.++||++++|++||+++||+.+.-..|+.-+ .|..+.
T Consensus 226 ----------~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~p~~g~~l~-gg~~~~ 294 (420)
T TIGR00767 226 ----------KGEVVASTFDEPPSRHVQVAELVLEKAKRLVEHKKDVVILLDSITRLARAYNTVTPPSGKVLS-GGVDAN 294 (420)
T ss_pred ----------HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEE-CCCCHH
T ss_conf ----------212321001344101246889999988887632563477402356766654103666663221-564501
Q ss_pred HHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCCCCH-HHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 5666578887631777-65325666543047664410-589999750342564115663188675322355431116201
Q gi|254780615|r 290 LALEMGELQERITTTL-KGSITSVQAIYVPADDLTDP-APATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDI 367 (478)
Q Consensus 290 ~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~~dp-i~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i 367 (478)
.++.-.++...+.+.. +||+|.+.+.+++.+.-.|- +-....+.-+..+.|+|.++++.+|||+|+..|.+|- +..+
T Consensus 295 ~~~~p~~~~g~~~~~~~gg~l~~~~~~~~~~g~~~d~~~~~~~~g~g~~~~~l~~~~~~~~~~p~~~~~~~g~~~-~~~l 373 (420)
T TIGR00767 295 ALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNLELHLDRKLADRRLFPAIDIKKSGTRK-EELL 373 (420)
T ss_pred HHCCCHHHHHHHCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCH-HHHC
T ss_conf 201414553001022466522221001231365101344443227775011100133321102210123456521-2320
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2899999999999999989989999
Q gi|254780615|r 368 VGQEHYDVARRVQEILQRYKSLQDI 392 (478)
Q Consensus 368 ~~~~h~~~a~~~r~~l~~y~el~~~ 392 (478)
..+++....-.+|+.++...+.+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (420)
T TIGR00767 374 LSPEELQKLWLLRKVLSPLDDVEAL 398 (420)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 3778888999998874044505789
No 64
>pfam00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain.
Probab=99.83 E-value=8.7e-20 Score=148.74 Aligned_cols=97 Identities=42% Similarity=0.668 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCC
Q ss_conf 99999999999989989999997365569988999999999999983499711000057897361599999999999767
Q gi|254780615|r 373 YDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQG 452 (478)
Q Consensus 373 ~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g 452 (478)
+++++.+|..|++|+|++++++++|.++||++|+..+.|+++|++||+||+|+++ +.+|++|++++|+..+++|++|
T Consensus 1 ~~v~~~~~~~Laqy~eL~~~~~~~G~d~L~~~~k~~l~~~~~~~~~L~Q~~~~p~---~~~~q~v~~~~~~~~~~~i~~g 77 (110)
T pfam00306 1 KQVAGQLKLELAQYRELQAIVQLVGEDALSEEDKLTLERARRIEEFLKQNQYSPE---PVEKQYVPVEETIDLFYALLRG 77 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCEEEHHHHHHHHHHHHCC
T ss_conf 9247999999998999999998718310489999999999999999827446887---7787542399999999999878
Q ss_pred CCCCCCHHHHHHCCCHHHHH
Q ss_conf 64468978976418999998
Q gi|254780615|r 453 EYDHLPELAFYMVGSIDEAV 472 (478)
Q Consensus 453 ~~d~~pe~~~~~~g~i~e~~ 472 (478)
++|++|+..|+++|++++..
T Consensus 78 ~~d~~p~~~~~~ig~~~~~~ 97 (110)
T pfam00306 78 KFDDLPEDALYRIGTIDLAK 97 (110)
T ss_pred CCCCCCHHHHHHCCCHHHHH
T ss_conf 77778899988628699999
No 65
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=98.74 E-value=1.9e-07 Score=67.81 Aligned_cols=198 Identities=17% Similarity=0.149 Sum_probs=106.7
Q ss_pred CCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0023110023557--02154100367566662489999999885057885268762164345999999854244200122
Q gi|254780615|r 133 LTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPR 210 (478)
Q Consensus 133 L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~ 210 (478)
+.|||..+|-++. +-+|.-.+|.|++|+|||+++.+.+.+.+..++.-|+|+...|...++.+-... -++...
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~---~g~~~~-- 75 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKS---FGWDLE-- 75 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH---CCCCHH--
T ss_conf 988955688631699829969999858972599999999999998658968999813799999999998---299858--
Q ss_pred CCCCCCCCCEEEEEEECCCCCHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHC
Q ss_conf 23444332316999717668967----87777777877689998669967999715599987601245531144101101
Q gi|254780615|r 211 KNNGSAVGSKCSLLYGQMNEPPG----ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGY 286 (478)
Q Consensus 211 ~~~~~~~~~~tv~v~~~~~~~~~----~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gY 286 (478)
.....+ +-.++-...+.... .+...--..-.+.++..+.+.+ ++++||+|-+.....+ .
T Consensus 76 ~~~~~g---~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~---------~---- 138 (231)
T pfam06745 76 KLEEEG---KLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKP---------A---- 138 (231)
T ss_pred HHHHCC---CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCH---------H----
T ss_conf 986469---6789862544222100112279999999999999971998-8999764164005889---------9----
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCC
Q ss_conf 22356665788876317776532566654304766441058999975034256411566318867532235
Q gi|254780615|r 287 QSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLD 357 (478)
Q Consensus 287 p~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~ 357 (478)
..-..+..|.... +.--+|.+.|......+-...-....-++.||-|.|+..-......=++-+.+
T Consensus 139 --~~r~~l~~l~~~l---k~~g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K 204 (231)
T pfam06745 139 --MAREILRRLKRVL---KKLGVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEIVK 204 (231)
T ss_pred --HHHHHHHHHHHHH---HHCCCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEEE
T ss_conf --9999999999999---97699199998212577765676301110036999998824998999999998
No 66
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.70 E-value=5.8e-07 Score=64.58 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=111.8
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 013420002311002355--702154100367566662489999999885057885268762164345999999854244
Q gi|254780615|r 127 STDASILTTGIKVIDLIS--PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSK 204 (478)
Q Consensus 127 ~~i~e~L~TGIkaID~l~--pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~ 204 (478)
....|.+.|||.-+|.++ =+-+|.-++|.|++|+|||+++++++.+..++ +.-|+|...-|..+ +++..+..-+
T Consensus 8 ~~~~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~-g~~~~~~~~ee~~~---~~~~~~~~~g 83 (241)
T PRK06067 8 EEEKEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQ-GKRGLAITTENTSK---SYLKQMESLK 83 (241)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCHH---HHHHHHHHCC
T ss_conf 4314525668755786506997799089998079988799999999999867-98299999428999---9999999839
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 20012223444332316999717668967877777778776899986699679997155999876012455311441011
Q gi|254780615|r 205 VNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAV 284 (478)
Q Consensus 205 ~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~ 284 (478)
+... .....+.+.-.-+.....+..+- .....--.+.+.-+..+.++ +++||+|-++....+-.+.
T Consensus 84 ~dl~--~~~~~G~L~i~~~~~~~~~~~~~---~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~~~-------- 149 (241)
T PRK06067 84 LDIS--DFFIWGYLRIFPLNTEGFEWNSE---LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDDVL-------- 149 (241)
T ss_pred CCHH--HHHHCCCCEEEECCCCCCCCCHH---HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHHHH--------
T ss_conf 9859--99866970578324111342155---68999999999999719989-9992801754138889999--------
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCC
Q ss_conf 01223566657888763177765325666543047664410589999750342564115663188675322355
Q gi|254780615|r 285 GYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDS 358 (478)
Q Consensus 285 gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S 358 (478)
+.+..+..|..| | .|.+.|+.. +-+.+.....+.++.|+-|.|+.....-...=.+.+++.
T Consensus 150 ----~~l~~l~~l~~~------g-~tvllt~~~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K~ 210 (241)
T PRK06067 150 ----NFFTECKNLCDN------G-KTILITLHP--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVKL 210 (241)
T ss_pred ----HHHHHHHHHHHC------C-CEEEEEECC--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEEE
T ss_conf ----999999999968------9-889999056--764766431248998999995878439999999999991
No 67
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.69 E-value=7.4e-07 Score=63.88 Aligned_cols=203 Identities=12% Similarity=0.140 Sum_probs=122.5
Q ss_pred HHCCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 000134200023110023557--021541003675666624899999998850578852687621643459999998542
Q gi|254780615|r 125 EQSTDASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 125 ~R~~i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~ 202 (478)
.....++.+.|||.-+|.|+- +-+|--.+|.|++|+|||+++.+.+.+.++ ++.-|+|..--|...... ..+..
T Consensus 240 ~~~~~~~rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~-~GE~~l~~~FeE~~~~l~---~~a~~ 315 (501)
T PRK09302 240 TQRSSNERISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACR-RGERCLLFAFEESRAQLV---RNATS 315 (501)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHH---HHHHH
T ss_conf 56665200047973278872599758946999889998889999999999986-599089999967999999---99997
Q ss_pred CCCCCCCCCCCCCCCCCEEEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 4420012223444332316999-717668967877777778776899986699679997155999876012455311441
Q gi|254780615|r 203 SKVNIDPRKNNGSAVGSKCSLL-YGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIP 281 (478)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~tv~v-~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P 281 (478)
-++.. ......+ +-.++ ..+...+|.+.. ..+=+--.+.+-+ .+++||++-|..|..+-.
T Consensus 316 ~G~dl--~~~~~~G---~l~i~~~~p~~~~~~e~~------~~i~~~v~~~~~~-rVvIDsls~~~~~~~~~~------- 376 (501)
T PRK09302 316 WGIDL--EEMERKG---LLKIICARPESTGLEDHL------QIIKREIEEFKPS-RVAVDPLSALARGGSLNE------- 376 (501)
T ss_pred CCCCH--HHHHHCC---CEEEEEECCCCCCHHHHH------HHHHHHHHHCCCC-EEEECCHHHHHHHCCHHH-------
T ss_conf 39984--8887489---479998370005989999------9999999972998-999958068765268599-------
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC-CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 01101223566657888763177765325666543047664-41058999975034256411566318867532235543
Q gi|254780615|r 282 SAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDL-TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360 (478)
Q Consensus 282 ~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~-~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~S 360 (478)
|...+.. +.+.+- .-.+|.+.|.+++..-- ..+-+..+-++.|+-|.|..--.+-..+=+|-++++-.
T Consensus 377 ----~r~~l~~-L~~~Lk------~~gvT~l~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~~g~l~R~i~VlK~R~ 445 (501)
T PRK09302 377 ----FRQFVIR-LTDYLK------QEEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALNVLKMRG 445 (501)
T ss_pred ----HHHHHHH-HHHHHH------HCCCEEEEEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEECCEEEEEEEEEEECC
T ss_conf ----9999999-999997------68978999761235567664476660011124789998713899989899999368
Q ss_pred C
Q ss_conf 1
Q gi|254780615|r 361 S 361 (478)
Q Consensus 361 r 361 (478)
.
T Consensus 446 s 446 (501)
T PRK09302 446 S 446 (501)
T ss_pred C
T ss_conf 9
No 68
>pfam02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain. This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.
Probab=98.60 E-value=1.7e-07 Score=68.06 Aligned_cols=67 Identities=43% Similarity=0.613 Sum_probs=56.9
Q ss_pred EEEEECCEEEEEEC-CCCCCCCCEEEECC-CCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 99995578999816-66523141899816-995599999987089879999814878887888889779
Q gi|254780615|r 13 IQQIMGAVVDVVFV-NSLPPIFSSLETSD-KGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTG 79 (478)
Q Consensus 13 V~~V~G~vvev~g~-~~~~~i~~~i~~~~-~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg 79 (478)
|++|.|+++++.+. ...|+++|.+.... +..+...|++.+++++.|++++|++|+||++|++|++||
T Consensus 1 v~~v~G~Vv~v~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~l~~~~V~~i~l~~t~Gl~~G~~V~~TG 69 (69)
T pfam02874 1 IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLSRGDEVKRTG 69 (69)
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEECCC
T ss_conf 979998999969695237885001597300378837998752489839999976867753899998295
No 69
>PRK04328 hypothetical protein; Provisional
Probab=98.54 E-value=1.5e-06 Score=61.92 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 200023110023557--021541003675666624899999998850578852687621643459999998542442001
Q gi|254780615|r 131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208 (478)
Q Consensus 131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~ 208 (478)
+.+.|||+-+|.++. +-+|.-.+|.|++|+|||+++.+.+.+.++ ++..|+|+..-|...+..+ .+..-+....
T Consensus 4 eRv~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~-~GE~~lyis~eE~~~~l~~---~~~~~G~d~~ 79 (250)
T PRK04328 4 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRR---NMAQFGWDVR 79 (250)
T ss_pred CEECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHH---HHHHCCCCHH
T ss_conf 11035856678751599879969999828999989999999999987-6997799997279999999---9998099868
Q ss_pred CCCCCCCCCCCEEEEEEECC-CC---CHHHHHHH------HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHC
Q ss_conf 22234443323169997176-68---96787777------7778776899986699679997155999876012455311
Q gi|254780615|r 209 PRKNNGSAVGSKCSLLYGQM-NE---PPGARSRV------ALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLG 278 (478)
Q Consensus 209 ~~~~~~~~~~~~tv~v~~~~-~~---~~~~r~~~------~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g 278 (478)
.....+ +-.++-+-+ .- ..-.++.. ....-.+.+..++.+-+ .+++||+|-+..+
T Consensus 80 --~~~~~g---~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-rvVIDSit~l~~~--------- 144 (250)
T PRK04328 80 --KYEEEG---KFAIVDAFTGGIGEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAK-RVVIDSVSTLYLT--------- 144 (250)
T ss_pred --HHHHCC---CEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHC---------
T ss_conf --986569---7799851233334200000101368535999999999999851898-8999370787745---------
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC--CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCC
Q ss_conf 4410110122356665788876317776532566654304766--44105899997503425641156631886753223
Q gi|254780615|r 279 RIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADD--LTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPL 356 (478)
Q Consensus 279 ~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD--~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~ 356 (478)
.+-..+ .....+.+.+.+. -+|++.|..++.++ ++.|- +-...||-|.|...-.+....-.+-+.
T Consensus 145 ~~~~~r----~~l~~l~~~l~~~------g~Ttll~~e~~~~~~~~~~~~---ve~~~DgvI~L~~~~~~~~~~R~l~I~ 211 (250)
T PRK04328 145 KPAVAR----SIVMQLKRVLAGL------GCTSIFVSQVSVGERGFGGPG---VEHAVDGIIRLDLDEIDGELKRSLIVW 211 (250)
T ss_pred CHHHHH----HHHHHHHHHHHHC------CCEEEEEECCCCCCCCCCCCC---EEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 858899----9999999999868------986999971003656667786---589998999988871399799999999
Q ss_pred C
Q ss_conf 5
Q gi|254780615|r 357 D 357 (478)
Q Consensus 357 ~ 357 (478)
+
T Consensus 212 K 212 (250)
T PRK04328 212 K 212 (250)
T ss_pred E
T ss_conf 8
No 70
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.53 E-value=2.5e-06 Score=60.41 Aligned_cols=197 Identities=17% Similarity=0.161 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 200023110023557--021541003675666624899999998850578852687621643459999998542442001
Q gi|254780615|r 131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208 (478)
Q Consensus 131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~ 208 (478)
+.+.|||.-+|-++- +-+|.-++|.|++|+|||+++.+.+.+.++. +..|+|+..-|-..++.+-+..+. ....
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g---~d~~ 78 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFG---WDLE 78 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEEECCHHHHHHHHHHCC---CCHH
T ss_conf 656899741888836898899789999389986899999999977626-985899992069899999998809---9778
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCH
Q ss_conf 22234443323169997176689678------777777787768999866996799971559998760124553114410
Q gi|254780615|r 209 PRKNNGSAVGSKCSLLYGQMNEPPGA------RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPS 282 (478)
Q Consensus 209 ~~~~~~~~~~~~tv~v~~~~~~~~~~------r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~ 282 (478)
..... -+-.++-+-....+.. -.......-.+-+.+.+.+ ..-+++||++.+......-..
T Consensus 79 --~~~~~---g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~~------- 145 (260)
T COG0467 79 --VYIEK---GKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDPAL------- 145 (260)
T ss_pred --HHHHC---CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCHHH-------
T ss_conf --97544---40687631211125420104665228999999999998628-988999663077665278257-------
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC-CCCCC
Q ss_conf 110122356665788876317776532566654304766441058999975034256411566318867-53223
Q gi|254780615|r 283 AVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYP-AIDPL 356 (478)
Q Consensus 283 ~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~P-AId~~ 356 (478)
+ -.....+.++.+ ++.+|++.+...+.+..... ...-.+.||.|.|+.....-+.+- .+.+.
T Consensus 146 ---~-r~~~~~l~~~~~------~~~~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~ 208 (260)
T COG0467 146 ---V-RRILLLLKRFLK------KLGVTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRIL 208 (260)
T ss_pred ---H-HHHHHHHHHHHH------HCCEEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf ---8-999999998765------06848999974433466656--614216899999977722572488899998
No 71
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.41 E-value=1.1e-05 Score=56.31 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 20002311002355--70215410036756666248999999988505788526876216434599999985
Q gi|254780615|r 131 SILTTGIKVIDLIS--PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 200 (478)
Q Consensus 131 e~L~TGIkaID~l~--pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~ 200 (478)
+.+.|||.-+|-++ =+-+|.-.+|-|++|+|||+++.+.+.+.++.++..|+|+...|...+..+....+
T Consensus 4 eRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~ 75 (501)
T PRK09302 4 EKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASF 75 (501)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 421448711577854898899779998389999999999999999885599789998579999999999984
No 72
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.34 E-value=1.4e-05 Score=55.50 Aligned_cols=118 Identities=17% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC--CHHHHHHHHHHHHHCC
Q ss_conf 34200023110023557--0215410036756666248999999988505788526876216--4345999999854244
Q gi|254780615|r 129 DASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE--RTREGNDLYHEMIDSK 204 (478)
Q Consensus 129 i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE--R~rEv~e~~~e~~~~~ 204 (478)
+.|.+.||++.+|-++- +.+|.=..|+|++|+|||+|+.+++.+.++. +..++|+- +| +.... .++....
T Consensus 1 ~~erisTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~-g~~vlYid-tE~~~~er~----~qi~~~~ 74 (224)
T PRK09361 1 IEELLPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQ-GKKVIYID-TEGLSPERF----KQIAGED 74 (224)
T ss_pred CCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEC-CCCCCHHHH----HHHHCCC
T ss_conf 98530379789998626998888799998999985999999999999974-99099967-876788999----9985657
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 20012223444332316999717668967877777778776899986699679997155999876
Q gi|254780615|r 205 VNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269 (478)
Q Consensus 205 ~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A 269 (478)
....+++-. ++...+-.. ...++..++.+..+ +--|+++||++-+-++
T Consensus 75 ---------~~~~~~~i~-~~~~~~~~~------~~~~i~~~~~~~~~-~~~lvVIDSi~~~~~~ 122 (224)
T PRK09361 75 ---------FEELLSNII-IFEPSSFEE------QREAIQKAEKIAKE-NVGLIVLDSATSLYRL 122 (224)
T ss_pred ---------HHHHHHCCE-EECCCCHHH------HHHHHHHHHHHHHC-CCCEEEEECCHHHEEH
T ss_conf ---------345420614-724798899------99999999987505-8738999623010000
No 73
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.32 E-value=4.1e-05 Score=52.45 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=93.6
Q ss_pred CCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC--CHHHHHHHHHHHHHCCCCCC
Q ss_conf 0023110023557--0215410036756666248999999988505788526876216--43459999998542442001
Q gi|254780615|r 133 LTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE--RTREGNDLYHEMIDSKVNID 208 (478)
Q Consensus 133 L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE--R~rEv~e~~~e~~~~~~~~~ 208 (478)
+.||+..+|-++= +.+|.=..|.|.+|+|||+|+.+++.|.++. +..++|+- +| -+....++.....
T Consensus 1 IsTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~-g~~v~Yid-tE~~~~er~~qi~~~~~------- 71 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYID-TEGLSSERFRQIAGDRP------- 71 (218)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEE-CCCCCCHHHHHHHHHHH-------
T ss_conf 9988078999856998788799998999984999999999998636-98699996-65567699999987536-------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCH
Q ss_conf 22234443323169997176689678777777787768999866996799971559998760124553114410110122
Q gi|254780615|r 209 PRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQS 288 (478)
Q Consensus 209 ~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~ 288 (478)
+.....+.+....|-.. ........+.+.+++ --|+++||++-+-++.- ...|+.....-
T Consensus 72 -------~~~~~~i~v~~~~~~~~------~~~~i~~~~~~~~~~-~~lvViDSi~tl~~~e~------~~~~~~~~~~r 131 (218)
T cd01394 72 -------ERAASSIIVFEPMDFNE------QGRAIQETETFADEK-VDLVVVDSATALYRLEL------GDDDTTIKNYR 131 (218)
T ss_pred -------HHHHCCCEEECCCCHHH------HHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHC------CCCCCHHHHHH
T ss_conf -------66530514626787688------999999999764147-72999914045545540------68964799999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEE--EEEC-CCCCCCHHHHHHHHHC-CCEEEEEHH
Q ss_conf 35666578887631777653256665--4304-7664410589999750-342564115
Q gi|254780615|r 289 TLALEMGELQERITTTLKGSITSVQA--IYVP-ADDLTDPAPATSFTHL-DATTVLSRQ 343 (478)
Q Consensus 289 ~~f~~~~~l~ERag~~~~GSIT~~~t--V~~~-~dD~~dpi~~~~~si~-Dg~ivLsr~ 343 (478)
.+...+..|..=|. +-.++.+-+ |... +.+.-.|+.=.+..|. |.-++|++.
T Consensus 132 ~l~~~~~~L~~~Ak---~~~~~vil~nqVt~~~~~~~~~p~GG~~LeH~vd~vl~~e~~ 187 (218)
T cd01394 132 ELAKQLTFLLWLAR---KHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKL 187 (218)
T ss_pred HHHHHHHHHHHHHH---HCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHCCEEEEEECC
T ss_conf 99999999999987---669889999215884577756556720414110289999848
No 74
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.31 E-value=6.3e-06 Score=57.76 Aligned_cols=146 Identities=21% Similarity=0.148 Sum_probs=85.4
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 15410036756666248999999988505788526876216434599999985424420012223444332316999717
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ 227 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~ 227 (478)
+++.+.|+|++|+|||+++..++.+..+.. ..++....+...+....... .....
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~--~~v~~~~~~~~~~~~~~~~~-----------------------~~~~~ 55 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-----------------------LIIVG 55 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCC--CCEEEEEHHHHHHHHHHHHH-----------------------HHHHC
T ss_conf 997899999997029999999998726689--96899875998988898765-----------------------30001
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 66896787777777877689998669967999715599987601245531144101101223566657888763177765
Q gi|254780615|r 228 MNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKG 307 (478)
Q Consensus 228 ~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~G 307 (478)
.+.....+...+....+.|++.. ..++++|++.++.............. ...........
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 115 (148)
T smart00382 56 GKKASGSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE----------------LRLLLLLKSEK 115 (148)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH----------------HHHHCCCCCCC
T ss_conf 12210519999999999998449----98999827502147620799999999----------------99851765789
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 32566654304766441058999975034256411
Q gi|254780615|r 308 SITSVQAIYVPADDLTDPAPATSFTHLDATTVLSR 342 (478)
Q Consensus 308 SIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr 342 (478)
.+..+.+... ...+.+...+..+|.++.+.+
T Consensus 116 ~~~vi~~~n~----~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 116 NLTVILTTND----EKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred CEEEEEEECC----CCCCCHHHHCCCCCEEEEEEC
T ss_conf 9899995699----522498770744787999828
No 75
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.07 E-value=8.5e-05 Score=50.35 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=83.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE-CCCC
Q ss_conf 003675666624899999998850578852687621643459999998542442001222344433231699971-7668
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG-QMNE 230 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~-~~~~ 230 (478)
.+|-|++|+|||+++.+++.+.++ ++.-|+|+..-|...+..+ .+..-+.... ..... .+-.++-. +...
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis~eE~~~~l~~---~~~~~g~d~~--~~~~~---g~l~i~~~~~~~~ 72 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELIE---NAESLGWDLE--RLEDE---GLLAIVDADPDEI 72 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHHH---HHHHCCCCHH--HHHHC---CCEEEEECCCCCC
T ss_conf 158768999999999999999987-6997899995079999999---9998399858--98645---8568996262002
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 96787777777877689998669967999715599987601245531144101101223566657888763177765325
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT 310 (478)
.+..........-.+.+.-+..+-++ +++||++-+..... . ...-.++..+ +.+.+ --+|
T Consensus 73 ~~~~~~~~~~l~~~i~~~i~~~~~~~-vVIDSi~~l~~~~~----------~--~~~~~~~~l~-~~l~~------~~~t 132 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEEFKAKR-VVIDSVSGLLLMEQ----------S--TARLEIRRLL-FALKR------FGVT 132 (187)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCE-EEECCHHHHHHCCH----------H--HHHHHHHHHH-HHHHH------CCCC
T ss_conf 20333236789999999999849989-99948688752566----------6--6899999999-99997------6996
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 666543047664410589999750342564115663
Q gi|254780615|r 311 SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISE 346 (478)
Q Consensus 311 ~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~ 346 (478)
.+.+.....++-....+.....+.||-|.|...--.
T Consensus 133 ~ll~~e~~~~~~~~~~~~~~~~l~DgiI~L~~~~~~ 168 (187)
T cd01124 133 TLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLDEEG 168 (187)
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECC
T ss_conf 899997425667667888477997899999788049
No 76
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.88 E-value=8.9e-05 Score=50.23 Aligned_cols=120 Identities=21% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHC-----CCCCEEEEEECCCH---HHHHHHHHHHHH
Q ss_conf 0023110023557--0215410036756666248999999988505-----78852687621643---459999998542
Q gi|254780615|r 133 LTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGERT---REGNDLYHEMID 202 (478)
Q Consensus 133 L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~-----~~~v~V~~~iGER~---rEv~e~~~e~~~ 202 (478)
|.||++.+|.++- +-.|+=.-|+|.+|+|||.|+++++.|++.. ....+||.-. |.+ +-..++.+
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdt-E~~f~~~Rl~qia~---- 75 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT-EGTFRPERLVQIAE---- 75 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHHHHH----
T ss_conf 9888578996507996478799999999984999999999998424753678962999953-67758899999999----
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 4420012223444332316999717668967877777778776899986699679997155999876
Q gi|254780615|r 203 SKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269 (478)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A 269 (478)
.. .......+++..++-..+-+ ..... -...-+++.+...--|+++||++-..+.
T Consensus 76 ~~------~~~~~~~l~~i~~~~~~~~~---~l~~~---l~~l~~~l~~~~~v~LvVIDSia~l~r~ 130 (235)
T cd01123 76 RF------GLDPEEVLDNIYVARAYNSD---HQLQL---LEELEAILIESSRIKLVIVDSVTALFRA 130 (235)
T ss_pred HH------CCCHHHHHCCEEEECCCCHH---HHHHH---HHHHHHHHHCCCCCEEEEEEECHHHHHH
T ss_conf 71------34724542254796379999---99999---9999998730377239999610455566
No 77
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.75 E-value=0.0018 Score=41.58 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=93.6
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 02154100367566662489999999885057885268762164345999999854244200122234443323169997
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLY 225 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~ 225 (478)
+-+|.-++|-|++|+|||+++++++.+..++ +.-|+|.-.-|-.+ +|++.|..-++... .....+.+...-+ +
T Consensus 21 ip~gs~~li~G~~GtGKsi~~~~~~~~~l~~-g~~~~yis~e~t~~---~~i~qm~s~g~di~--~~~~~G~l~~i~~-~ 93 (230)
T PRK08533 21 IPFGSIILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSSQLTTT---EFIKQMMSLGYDIN--KKLISGKLLYIPV-Y 93 (230)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCHH---HHHHHHHHCCCCCH--HHHHCCCEEEEEC-C
T ss_conf 8898489998689987899999999999878-98699999438999---99999998699817--9975796799961-3
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 17668967877777778776899986699679997155999876012455311441011012235666578887631777
Q gi|254780615|r 226 GQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305 (478)
Q Consensus 226 ~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~ 305 (478)
..-.++ ..+..+.. .+-+..+..++|| +++||+|-..... ..+..+...+ +.+.+..+.+
T Consensus 94 ~~~~~~---~~~~~~L~-~ll~~~~~~~~dv-IIIDSlS~l~~~~--------------~~~~~~~~~~-~~lk~l~s~g 153 (230)
T PRK08533 94 PLLSGN---SEKRDFLD-KLMNTRRFYEKDV-VIIDSLSSLVSRD--------------ASEVQIRDLM-AFFKRISSLN 153 (230)
T ss_pred CCCCCH---HHHHHHHH-HHHHHHHHCCCCE-EEEECCHHHHHCC--------------CCHHHHHHHH-HHHHHHHHCC
T ss_conf 433540---45789999-9973266437989-9990531885167--------------7789999999-9999998589
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 65325666543047664410589999750342564115663
Q gi|254780615|r 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISE 346 (478)
Q Consensus 306 ~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~ 346 (478)
+ |.+.|+. .+.+++..-.-++++-|++|.|+.....
T Consensus 154 k---tIilTv~--p~~~~e~~l~~lrs~aDv~i~L~~~~vG 189 (230)
T PRK08533 154 K---VIILTAN--PKELPESVLLILRTASTILIRLEVKVFG 189 (230)
T ss_pred C---EEEEEEC--CCCCCHHHHHHHHEEEEEEEEEEEEECC
T ss_conf 8---8999956--3313624544204104899998736109
No 78
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.69 E-value=0.00013 Score=49.18 Aligned_cols=111 Identities=25% Similarity=0.360 Sum_probs=75.0
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 4200023110023557---0215410036756666248999999988505788526876216434599999985424420
Q gi|254780615|r 130 ASILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVN 206 (478)
Q Consensus 130 ~e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~ 206 (478)
-+.+.||.-++|..+- +.+|.=+-|+|++++|||+|+..++.+.|+. +.+|+|.=. |.+-. .++.+.+ ++
T Consensus 30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~-gg~~~~iD~-E~a~d-~~~a~~l---GV- 102 (322)
T pfam00154 30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDA-EHALD-PVYAKKL---GV- 102 (322)
T ss_pred CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHHCC-HHHHHHC---CC-
T ss_conf 54461580899998758997787089998898777899999999999734-993899853-66059-8899980---98-
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 0122234443323169997176689678777777787768999866996799971559998
Q gi|254780615|r 207 IDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 207 ~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a 267 (478)
..++ +++++.| ...-++.++|++...|.-.|+++||+.-.+
T Consensus 103 ----------D~~~--l~~~qpd--------~~Eqal~i~~~li~~~~~~liViDSvaal~ 143 (322)
T pfam00154 103 ----------DIDN--LLVSQPD--------TGEQALEIADMLVRSGAVDLIVVDSVAALV 143 (322)
T ss_pred ----------CHHH--EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf ----------8025--3897788--------399999999998537997659982534567
No 79
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.53 E-value=0.00024 Score=47.43 Aligned_cols=110 Identities=25% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 200023110023557---02154100367566662489999999885057885268762164345999999854244200
Q gi|254780615|r 131 SILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNI 207 (478)
Q Consensus 131 e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~ 207 (478)
+.+.||.-.+|..+- +.+|.=+-|+|+.++|||+++..++.+.|+. +..|+|.=. |..= -.++.+.+ ++
T Consensus 34 ~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~-gg~~~~iDa-E~a~-d~~~a~~l---GV-- 105 (325)
T cd00983 34 EVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDA-EHAL-DPVYAKKL---GV-- 105 (325)
T ss_pred CEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHCC-CHHHHHHC---CC--
T ss_conf 3462681999999758996688089998898777999999999998735-983999962-5425-98999980---99--
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 122234443323169997176689678777777787768999866996799971559998
Q gi|254780615|r 208 DPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 208 ~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a 267 (478)
..++ +++.+.+ ...-++.++|.+...|.--|+++||+.-..
T Consensus 106 ---------D~~~--l~~~qp~--------~~Eq~l~i~~~li~s~~~dliViDSvaal~ 146 (325)
T cd00983 106 ---------DLDN--LLISQPD--------TGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred ---------CHHH--EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf ---------8467--5896663--------899999999997515887679981511236
No 80
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.45 E-value=0.00094 Score=43.49 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCC-----CCCEEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 0023110023557--02154100367566662489999999885057-----8852687621643459999998542442
Q gi|254780615|r 133 LTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGYSVFAGVGERTREGNDLYHEMIDSKV 205 (478)
Q Consensus 133 L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~-----~~v~V~~~iGER~rEv~e~~~e~~~~~~ 205 (478)
+.||++.+|.++= +..|+=.-|+|.+|+|||.++.+++.|.++.. ...+||.-. |.+= -.|.++++..+..
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDt-E~~f-~~~rl~~i~~~~~ 78 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT-EGAF-RPERLVQLAVRFG 78 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCC-CHHHHHHHHHHHC
T ss_conf 9887478998857998888399999999998999999999998542211699961999955-7753-1999999987603
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 00122234443323169997176689678777777787768999866996799971559998
Q gi|254780615|r 206 NIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 206 ~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a 267 (478)
......+++..++-.. +- +. ....+.-.+.+..+++--|+++||++-..
T Consensus 79 ------~~~~~~l~~i~~~~~~-~~---e~---~~~~~~~l~~~~~~~~v~liViDSi~al~ 127 (226)
T cd01393 79 ------LDPEEVLDNIYVARPY-NG---EQ---QLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred ------CCHHHHHHHEEEECCC-CH---HH---HHHHHHHHHHHHHCCCCEEEEEECCCEEC
T ss_conf ------2667764333684379-99---99---99999999987524784289993220011
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.26 E-value=0.0016 Score=42.01 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=49.6
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 02154100367566662489999999885057885268762164345999999854244200122234443323169997
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLY 225 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~ 225 (478)
-++=.-+-++|++|||||||+.-|++. .+ ....-+-++----.|+++.+++
T Consensus 49 ~~~~~S~Il~GPPGtGKTTLA~iIA~~-t~--~~F~~lsAv~sgvkdlr~ii~~-------------------------- 99 (726)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANH-TR--AHFSSLNAVLAGVKDLRAEVDA-------------------------- 99 (726)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-HC--CCEEEEECCCCCHHHHHHHHHH--------------------------
T ss_conf 699982788897999999999999887-48--8679985620377999999999--------------------------
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 1766896787777777877689998-6699679997155999876012455
Q gi|254780615|r 226 GQMNEPPGARSRVALTGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISA 275 (478)
Q Consensus 226 ~~~~~~~~~r~~~~~~a~tiAEyfr-d~g~dVll~~Dsltr~a~A~rEisl 275 (478)
|+..+ ..|+.++||+|-+-||-.++-+.=|
T Consensus 100 --------------------A~~~~~~~g~~tILFIDEIHRfNK~QQD~LL 130 (726)
T PRK13341 100 --------------------AKERLERHGKRTILFIDEVHRFNKAQQDALL 130 (726)
T ss_pred --------------------HHHHHHHCCCCEEEEEECHHHCCHHHHHHHH
T ss_conf --------------------9999874599659998625425887899878
No 82
>PRK09354 recA recombinase A; Provisional
Probab=97.20 E-value=0.0014 Score=42.36 Aligned_cols=109 Identities=25% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 200023110023557---02154100367566662489999999885057885268762164345999999854244200
Q gi|254780615|r 131 SILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNI 207 (478)
Q Consensus 131 e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~ 207 (478)
+.+.||.-.+|.-+- +.+|.=+-|+|+..+|||+|+..++.+.|+. +.+|+|.=. |..= -.++.+.+ ++
T Consensus 39 ~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~-Gg~~a~iDa-E~al-d~~~a~~l---GV-- 110 (350)
T PRK09354 39 ETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDA-EHAL-DPVYAKKL---GV-- 110 (350)
T ss_pred CEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEE-CCCC-CHHHHHHC---CC--
T ss_conf 6544771789998758996787089998898777999999999999975-994799960-0027-98899984---97--
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 12223444332316999717668967877777778776899986699679997155999
Q gi|254780615|r 208 DPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRF 266 (478)
Q Consensus 208 ~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~ 266 (478)
+-.-+++++.| ...-|+.++|.+...|.--++++||+.-.
T Consensus 111 -----------d~d~llv~qpd--------~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL 150 (350)
T PRK09354 111 -----------DIDNLLVSQPD--------TGEQALEIADALVRSGAVDLIVVDSVAAL 150 (350)
T ss_pred -----------CHHHEEEECCC--------HHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf -----------71571785686--------79999999999985488418998253345
No 83
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.18 E-value=0.0012 Score=42.70 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=30.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 00367566662489999999885057885268762164345999999854
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 201 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~ 201 (478)
.-|.|++|+|||.||.-+.+.+.+.+....|+-.-.| +|.+++.
T Consensus 148 LfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae------~F~~~~v 191 (447)
T PRK00149 148 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSE------KFTNDFV 191 (447)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHH------HHHHHHH
T ss_conf 5897799887889999999999985899728995499------9999999
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.00 E-value=0.005 Score=38.74 Aligned_cols=105 Identities=23% Similarity=0.322 Sum_probs=57.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 00367566662489999999885057885268762164345999999854244200122234443323169997176689
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEP 231 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~ 231 (478)
.-|.|++|.|||.||.-+.+... .+ +..|+-.-.| +|.+++..+-- . +.
T Consensus 144 LfIyG~~GlGKTHLL~AIgn~i~-~~-~~kV~Yvtae------~F~~~~v~ai~--------------~--------~~- 192 (455)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVSALR-ES-GGKILYVSSE------LFTEHLVSAIR--------------S--------GE- 192 (455)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-CC-CCEEEEECHH------HHHHHHHHHHH--------------C--------CC-
T ss_conf 58878999978999999999853-79-9869997499------99999999997--------------5--------88-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH-----------------HHHHHHHHHHCCCCHHHHCCHHHHHHH
Q ss_conf 678777777787768999866996799971559998-----------------760124553114410110122356665
Q gi|254780615|r 232 PGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT-----------------QANSEISALLGRIPSAVGYQSTLALEM 294 (478)
Q Consensus 232 ~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a-----------------~A~rEisl~~g~~P~~~gYp~~~f~~~ 294 (478)
...+ -++|| .-||||+ ||+-.++ +.++.|-+...++|. ++
T Consensus 193 -~~~F---------r~~yr--~~DvLLI-DDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~----------el 249 (455)
T PRK12422 193 -MQRF---------RSFYR--NVDALFI-EDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPG----------DL 249 (455)
T ss_pred -HHHH---------HHHHH--CCCEEEE-EHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH----------HH
T ss_conf -9999---------99996--3887763-147887284889999999999999859969996898957----------65
Q ss_pred HHHHHHHC-CCCCCCEE
Q ss_conf 78887631-77765325
Q gi|254780615|r 295 GELQERIT-TTLKGSIT 310 (478)
Q Consensus 295 ~~l~ERag-~~~~GSIT 310 (478)
..|.+|.- ++..|=++
T Consensus 250 ~~l~~RL~SRf~~GL~v 266 (455)
T PRK12422 250 KAMEERLISRFEWGIAI 266 (455)
T ss_pred HHHHHHHHHHHHCCEEE
T ss_conf 12689999886376132
No 85
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0093 Score=36.98 Aligned_cols=174 Identities=19% Similarity=0.237 Sum_probs=92.6
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHC
Q ss_conf 0134200023110023557--021541003675666624899999998850578852687-6216434599999985424
Q gi|254780615|r 127 STDASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDS 203 (478)
Q Consensus 127 ~~i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~ 203 (478)
....+.+.||.+++|.++- +-+|.-.-|||+.|+|||+++.+++-|.|+. ...++|. .-| +-....+.. +...
T Consensus 36 ~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~--~l~p~r~~~-l~~~ 111 (279)
T COG0468 36 REDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEH--ALDPERAKQ-LGVD 111 (279)
T ss_pred HHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCC--CCCHHHHHH-HHHH
T ss_conf 6436601655055787746886553589984688765466899998886537-98089995899--989999999-8875
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHH-HHHHHHHCCC
Q ss_conf 420012223444332316999717668967877777778776899986699--6799971559998760-1245531144
Q gi|254780615|r 204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQ--DVLFFVDNIFRFTQAN-SEISALLGRI 280 (478)
Q Consensus 204 ~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~--dVll~~Dsltr~a~A~-rEisl~~g~~ 280 (478)
. ..-+++++.+. ..-++-+++++-..+. ==|+++||++-+-++. .+
T Consensus 112 ~---------------~d~l~v~~~~~--------~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~-------- 160 (279)
T COG0468 112 L---------------LDNLLVSQPDT--------GEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE-------- 160 (279)
T ss_pred H---------------HCCEEEECCCC--------HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCC--------
T ss_conf 4---------------21536866897--------7999999999987546887889982574346365548--------
Q ss_pred CHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE---CCC---CCCCHHHHHHHHHCCCE
Q ss_conf 1011012235666578887631777653256665430---476---64410589999750342
Q gi|254780615|r 281 PSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYV---PAD---DLTDPAPATSFTHLDAT 337 (478)
Q Consensus 281 P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~---~~d---D~~dpi~~~~~si~Dg~ 337 (478)
.+..+-+.-..+.+-+.+-+..+..+ ++.+.|=.+ ++. |...|+.-++..|.-..
T Consensus 161 d~~~~~~~r~ls~~l~~L~~~a~~~~--~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~ 221 (279)
T COG0468 161 DGHLGLRARLLSKALRKLTRLANKYN--TAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASV 221 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHE
T ss_conf 53489999999999999999999749--58999784034067666886658772388755324
No 86
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.92 E-value=0.004 Score=39.40 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=49.8
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 100367566662489999999885-0578852687621643459999998542442001222344433231699971766
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMN 229 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~-~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~ 229 (478)
-++|.|-+|+|||||+..+.++.. +.+=+.++++-+++.. ...++...+.+.-.. . . ....+
T Consensus 21 vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~------------~-~---~~~~~ 83 (285)
T pfam00931 21 VVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTY-TEFRLQKDILQELGL------------D-D---SDWVE 83 (285)
T ss_pred EEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCC-CHHHHHHHHHHHHCC------------C-C---CCCCC
T ss_conf 99988999563999999997165565059838999979766-689999999998566------------6-5---45555
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 896787777777877689998669967999715599
Q gi|254780615|r 230 EPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFR 265 (478)
Q Consensus 230 ~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr 265 (478)
... ...+..+.+++ ++|..|+++||+-.
T Consensus 84 ~~~------~~l~~~l~~~L--~~kr~LiVLDDVw~ 111 (285)
T pfam00931 84 KNE------SELAVKIKEAL--LRKRFLLVLDDVWE 111 (285)
T ss_pred CCH------HHHHHHHHHHH--CCCCEEEEECCCCC
T ss_conf 789------99999999997--27966999638887
No 87
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0093 Score=36.98 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=30.0
Q ss_pred CCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1100235-57021541003675666624899999998
Q gi|254780615|r 137 IKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
++|+|.. +.+-+|..++|+|.+|+|||||+..+..-
T Consensus 39 ~~AL~~Is~~i~~Ge~vaIIG~nGsGKSTL~~~l~Gl 75 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 7986164558859989999949998499999999758
No 88
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=96.87 E-value=0.0047 Score=38.93 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=75.5
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEEE-C-CCH
Q ss_conf 44410000134200023110023557--021541003675666624899999998850-----57885268762-1-643
Q gi|254780615|r 120 SPSYTEQSTDASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAK-----AHGGYSVFAGV-G-ERT 190 (478)
Q Consensus 120 ~p~~~~R~~i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~-----~~~~v~V~~~i-G-ER~ 190 (478)
+...+++..--..|.||.+.+|.++- +-+|.=.-|+|.+|+|||.++.+++.+++- .....+||.=. | =+.
T Consensus 12 ~~~~~~~r~~~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~ 91 (261)
T pfam08423 12 ATELHQRRSEVIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRP 91 (261)
T ss_pred HHHHHHHHCCCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCH
T ss_conf 99999975487357789878998737986677299998998887899999999994070965699972899936888698
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 4599999985424420012223444332316999717668967877777778776899986699679997155999876
Q gi|254780615|r 191 REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269 (478)
Q Consensus 191 rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A 269 (478)
+-..++.+.+ .......+++.. ++-..|- -.++.... .+.+.+. +.+--|+++||++-+-++
T Consensus 92 eRl~qia~~~----------~~~~~~~L~~I~-v~r~~~~--~~~~~~l~---~~~~~~~-~~~v~LvVvDSiaalfR~ 153 (261)
T pfam08423 92 ERIVAIAERF----------GLDPEEVLDNIA-YARAYNT--EHQMQLLL---QAAAMMS-ESRFALLIVDSATALYRT 153 (261)
T ss_pred HHHHHHHHHH----------CCCHHHHHHHCE-ECCCCCH--HHHHHHHH---HHHHHHH-CCCCEEEEEECCCEEEEE
T ss_conf 9999999982----------999789875331-4168998--99999999---9999873-178349998324002333
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.84 E-value=0.0048 Score=38.86 Aligned_cols=83 Identities=20% Similarity=0.382 Sum_probs=46.9
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf 55702154100367566662489999999885057885268762164345999999854244200122234443323169
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCS 222 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv 222 (478)
++--++=.-+.++|++|||||||+.-++.. . +....-+-++-....|+++++++
T Consensus 31 ~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~-~--~~~f~~lnA~~~gv~dir~ii~~----------------------- 84 (417)
T PRK13342 31 MIEAGRLSSMILWGPPGTGKTTLARIIAGA-T--DAEFEALSAVTSGVKDLREVIEE----------------------- 84 (417)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHH-H--CCCEEEEECCCCCHHHHHHHHHH-----------------------
T ss_conf 997699975998896999899999999998-6--89889961410388999999999-----------------------
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 99717668967877777778776899986699679997155999876012455
Q gi|254780615|r 223 LLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA 275 (478)
Q Consensus 223 ~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl 275 (478)
|++. ..|+..++|+|-+-||-.++-+.=|
T Consensus 85 -----------------------a~~~-~~~~~tilfiDEIHRfnK~QQD~LL 113 (417)
T PRK13342 85 -----------------------AKQS-RLGRRTILFIDEIHRFNKAQQDALL 113 (417)
T ss_pred -----------------------HHHH-HCCCCEEEEEECHHHCCHHHHHHHH
T ss_conf -----------------------8863-1489659999782005889999998
No 90
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.82 E-value=0.0057 Score=38.34 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=75.3
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCHHHHHHHHHHHHHHC--C---CCCEEEEEE-C-CCH
Q ss_conf 444100001342000231100235570--215410036756666248999999988505--7---885268762-1-643
Q gi|254780615|r 120 SPSYTEQSTDASILTTGIKVIDLISPY--QKGGKIGLFGGAGVGKTVLIMELINNVAKA--H---GGYSVFAGV-G-ERT 190 (478)
Q Consensus 120 ~p~~~~R~~i~e~L~TGIkaID~l~pi--g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~--~---~~v~V~~~i-G-ER~ 190 (478)
+-..+++..-...+.||.+.+|.++-= -.|.=.-|||.+|+|||.|+.+++.|++.. . +.-+||.=. | =|.
T Consensus 72 a~el~~~r~~~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~p 151 (318)
T PRK04301 72 ALEVLERRKSIGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRP 151 (318)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCH
T ss_conf 99999986347824788878880547983367078886688787035667767653376777898863799956898697
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHH
Q ss_conf 45999999854244200122234443323169997176689678777777787768999866996-79997155999876
Q gi|254780615|r 191 REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQD-VLFFVDNIFRFTQA 269 (478)
Q Consensus 191 rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~d-Vll~~Dsltr~a~A 269 (478)
+-..++-+-+ .......+++..+.-+ .|. -.++.... ...+++ .++++ -|+++||++-+-++
T Consensus 152 eRi~qia~~~----------g~d~~~~L~nI~v~r~-~~~--~~q~~~~~---~~~~~~-~~~~~v~LvVvDSi~alfR~ 214 (318)
T PRK04301 152 ERIEQMAEGL----------GLDPDEVLDNIHVARA-YNS--DHQMLLAE---KAEELI-KEGNNIKLVIVDSLTAHFRA 214 (318)
T ss_pred HHHHHHHHHH----------CCCHHHHHHCEEEEEC-CCH--HHHHHHHH---HHHHHH-HHCCCCEEEEEECCHHHEEE
T ss_conf 9999999984----------9997898640268613-998--99999999---999999-62788049999434232121
No 91
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.71 E-value=0.0023 Score=40.90 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=37.8
Q ss_pred CCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 0023110023557-0215410036756666248999999988505
Q gi|254780615|r 133 LTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKA 176 (478)
Q Consensus 133 L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~ 176 (478)
+.||+..+|-++- +.+|+=.-|.|.+|+|||+++..++.|.+..
T Consensus 2 IpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~ 46 (186)
T pfam03796 2 LPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARNAALK 46 (186)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 388807788642698888179999679998799999999999997
No 92
>PRK08506 replicative DNA helicase; Provisional
Probab=96.62 E-value=0.0022 Score=41.13 Aligned_cols=53 Identities=25% Similarity=0.452 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0023110023557-0215410036756666248999999988505788526876
Q gi|254780615|r 133 LTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 133 L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
+.||++.+|-++. +.+|+=+-|-|-+++|||+++..++.|.++....|.+|-+
T Consensus 176 i~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~~V~~FSL 229 (473)
T PRK08506 176 LDTGFKQLNKMTKGFNKGDLIIIAARPSMGKTTLVLNMVLKALNQGKGVAFFSL 229 (473)
T ss_pred CCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 778808788872699856279995079986789999999999965996589822
No 93
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.61 E-value=0.015 Score=35.57 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 200023110023557--021541003675666624899999998850578852687621643459999998542442001
Q gi|254780615|r 131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208 (478)
Q Consensus 131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~ 208 (478)
+.+.||+.=+|-.+= +..|.=++|=|.+|+|||||+.+++.+.++.+ .-+.| ..||-+-+=--+--
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~-~~vLY-vSGEES~~QIk~RA---------- 129 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLY-VSGEESPEQIKLRA---------- 129 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEE-EECHHHHHHHHHHH----------
T ss_conf 5444783666540057730671799825998868899999999998639-93899-82456789999899----------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 2223444332316999717668967877777778776899986699679997155999
Q gi|254780615|r 209 PRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRF 266 (478)
Q Consensus 209 ~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~ 266 (478)
.. -+.....+.+.+..|-. .|.+.. ++-+--++++||+--.
T Consensus 130 -~R---Lg~~~~~l~l~set~le------------~Il~~i-~~~kP~~lIIDSIQT~ 170 (372)
T cd01121 130 -DR---LGISTENLYLLAETNLE------------DILASI-EELKPDLVIIDSIQTV 170 (372)
T ss_pred -HH---HCCCCCCCEEEECCCHH------------HHHHHH-HHHCCCEEEEECHHHC
T ss_conf -98---58788772788435699------------999999-9719988999562202
No 94
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.58 E-value=0.016 Score=35.43 Aligned_cols=106 Identities=21% Similarity=0.320 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 4200023110023557--02154100367566662489999999885057885268762164345999999854244200
Q gi|254780615|r 130 ASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNI 207 (478)
Q Consensus 130 ~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~ 207 (478)
.+.+.||+.=+|-.+= +..|+=++|=|.+|+|||||+.+++.+.++. ..+.| ..||-+-+=--.--+
T Consensus 69 ~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~--~~vLY-vSGEES~~Qik~RA~-------- 137 (454)
T PRK11823 69 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAG--GKVLY-VSGEESLQQIKLRAE-------- 137 (454)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--CCEEE-ECCCHHHHHHHHHHH--------
T ss_conf 5532378556652215872066489950799888999999999998559--95799-815015789999999--------
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 1222344433231699971766896787777777877689998669967999715599
Q gi|254780615|r 208 DPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFR 265 (478)
Q Consensus 208 ~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr 265 (478)
. -+.....+.+++..|-.. |.+... +-+--++++||+--
T Consensus 138 ---R---Lg~~~~~l~l~~et~l~~------------Il~~i~-~~~P~~lIIDSIQT 176 (454)
T PRK11823 138 ---R---LGLPSDNLYLLAETNLED------------ILATIE-EEKPDLVVIDSIQT 176 (454)
T ss_pred ---H---HCCCCCCCEEEECCCHHH------------HHHHHH-HHCCCEEEEECHHE
T ss_conf ---7---588888737885368999------------999998-60998899943111
No 95
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=96.56 E-value=0.002 Score=41.40 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCC--CC--EEEEEECCCHHHHHHHHHHHHH
Q ss_conf 13420002311002355-7021541003675666624899999998850578--85--2687621643459999998542
Q gi|254780615|r 128 TDASILTTGIKVIDLIS-PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHG--GY--SVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 128 ~i~e~L~TGIkaID~l~-pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~--~v--~V~~~iGER~rEv~e~~~e~~~ 202 (478)
--.|.+=.-.+.++-|. ==++=+-.+|+||+++|||||+=|++++.+..-+ +. +=.+.|.||+ |+.--|+=.++
T Consensus 101 IaRE~~G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERS-EIAgC~~GvPQ 179 (282)
T TIGR02858 101 IAREVLGAADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERS-EIAGCVNGVPQ 179 (282)
T ss_pred EEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH-HHHHHCCCCCC
T ss_conf 02000577566688773058944678888688988510488898886078542468997469984324-65654588241
Q ss_pred CCCCCC
Q ss_conf 442001
Q gi|254780615|r 203 SKVNID 208 (478)
Q Consensus 203 ~~~~~~ 208 (478)
.++...
T Consensus 180 ~~vG~R 185 (282)
T TIGR02858 180 LDVGIR 185 (282)
T ss_pred CCCCCC
T ss_conf 446760
No 96
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.51 E-value=0.0097 Score=36.86 Aligned_cols=217 Identities=19% Similarity=0.175 Sum_probs=122.9
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC--EECCCCCCCCHHHHHHHHHHHHHHCC-----------CC----C
Q ss_conf 4544410000134200023110023557021541--00367566662489999999885057-----------88----5
Q gi|254780615|r 118 QPSPSYTEQSTDASILTTGIKVIDLISPYQKGGK--IGLFGGAGVGKTVLIMELINNVAKAH-----------GG----Y 180 (478)
Q Consensus 118 ~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr--~gIfgg~GvGKT~l~~~~i~n~~~~~-----------~~----v 180 (478)
..+...++|...=.-|.||++.+|-|+==|-=-+ .=+||-+|+|||-|+.+++-|+|--. ++ -
T Consensus 63 ~~a~~vl~rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~ 142 (333)
T TIGR02236 63 ETADDVLERRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPK 142 (333)
T ss_pred HHHHHHHHHHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCE
T ss_conf 14899999872075044486367656079600005888771007865787667655322871121011000147767876
Q ss_pred EEEEEE-----CCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 268762-----164345999-99985424420012223444332316999717668967877777778776899986699
Q gi|254780615|r 181 SVFAGV-----GERTREGND-LYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQ 254 (478)
Q Consensus 181 ~V~~~i-----GER~rEv~e-~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~ 254 (478)
.||+=- =||-.++.+ +-.+ ...........++|++.=+.=|=.+ -.|+.-+--+-.+++--.++++
T Consensus 143 av~IDTEnTFRPERI~qmA~GL~~g-----~l~~~melD~~evL~nI~vARAyNS---~HQmllve~~~~li~e~~~~~~ 214 (333)
T TIGR02236 143 AVYIDTENTFRPERIEQMAKGLARG-----TLQAAMELDPDEVLKNIYVARAYNS---NHQMLLVEKAKELIKELKNEDK 214 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----HHHHHHCCCHHHHHCCEEEEEEECC---HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8998559798625799999863111-----3666532787777203047785263---1479999999999973015799
Q ss_pred CE-EEEEECHHHHHHHHHHHHHHHCCCCHHHHC---CHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC------CCCCC
Q ss_conf 67-999715599987601245531144101101---223566657888763177765325666543047------66441
Q gi|254780615|r 255 DV-LFFVDNIFRFTQANSEISALLGRIPSAVGY---QSTLALEMGELQERITTTLKGSITSVQAIYVPA------DDLTD 324 (478)
Q Consensus 255 dV-ll~~Dsltr~a~A~rEisl~~g~~P~~~gY---p~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~------dD~~d 324 (478)
+| ||++||||-|=+| |-|||+.- |=.|.- |=.=|.|.++.=+ +-.+=|=-|.+ ||-+-
T Consensus 215 pv~L~~VDSLtsHFRa---------EY~GRg~LA~RQQKLnk-Hlh~L~~ladlyn--~aV~VTNQV~A~PDaFFG~Pt~ 282 (333)
T TIGR02236 215 PVRLLIVDSLTSHFRA---------EYVGRGNLAERQQKLNK-HLHDLLRLADLYN--AAVVVTNQVMARPDAFFGDPTK 282 (333)
T ss_pred CEEEEEECCCCCCCCC---------CCCCHHHHHHHHHHHHH-HHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCC
T ss_conf 4689998121002236---------76450247889869878-8998865414021--7899855612278734486987
Q ss_pred HHHHHHHHHCCCE-EEEEHHHHHCCCCCCCC
Q ss_conf 0589999750342-56411566318867532
Q gi|254780615|r 325 PAPATSFTHLDAT-TVLSRQISEKGIYPAID 354 (478)
Q Consensus 325 pi~~~~~si~Dg~-ivLsr~la~~g~~PAId 354 (478)
||-=++.+|.=+. +||-+...++++-==||
T Consensus 283 piGGhilgH~AT~R~yLrKsk~~kRiarl~D 313 (333)
T TIGR02236 283 PIGGHILGHAATFRLYLRKSKGDKRIARLVD 313 (333)
T ss_pred CCCCEEECCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 7677154127856899996479814899873
No 97
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.013 Score=35.99 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=47.7
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 21541003675666624899999998850578852687621643459999998542442001222344433231699971
Q gi|254780615|r 147 QKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
++=.-+-+.|++|||||+|+.-++.. .+..+.-+-++----.|+++.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~---~~~~f~~~sAv~~gvkdlr~i------------------------------ 92 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT---TNAAFEALSAVTSGVKDLREI------------------------------ 92 (436)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEECCCCCCHHHHHHH------------------------------
T ss_conf 99860577789998888999999876---177669951523467999999------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 7668967877777778776899986699679997155999876012455
Q gi|254780615|r 227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA 275 (478)
Q Consensus 227 ~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl 275 (478)
+.-|+-++..|+.++||+|-+-||-.++.+.=|
T Consensus 93 ----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 93 ----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred ----------------HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHH
T ss_conf ----------------999999872588349987225333744565510
No 98
>PRK06749 replicative DNA helicase; Provisional
Probab=96.49 E-value=0.0028 Score=40.36 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 00023110023557-02154100367566662489999999885057885268
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
-+.||++.+|-++. +.+|+=+-|=|-+++|||+++..++.|.++....+.+|
T Consensus 168 Gi~TGf~~LD~lt~Gl~~g~LiviaaRPsmGKTa~alnia~~~a~~g~~v~~f 220 (428)
T PRK06749 168 GIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLF 220 (428)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 68778388987524999886899962798976899999999999649927998
No 99
>PRK05595 replicative DNA helicase; Provisional
Probab=96.38 E-value=0.0032 Score=40.00 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 00023110023557-0215410036756666248999999988505
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKA 176 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~ 176 (478)
-+.||++.+|-++- +.+|+=+-|-|.+|+|||+++..++.|.+..
T Consensus 183 Gi~TGf~~LD~~t~Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~ 228 (444)
T PRK05595 183 GVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALR 228 (444)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7658847699874599857779998579898079999999999986
No 100
>PRK05748 replicative DNA helicase; Provisional
Probab=96.36 E-value=0.0031 Score=40.06 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=43.6
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 00023110023557-0215410036756666248999999988505788526876216434
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 191 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~r 191 (478)
=+.||++.+|-++. +.+|+=+-|-|.+|+|||+++..++.|.+... +..|...--|-+.
T Consensus 185 Gi~TG~~~LD~~~~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~~-~~~v~~fSlEM~~ 244 (448)
T PRK05748 185 GIPTGFRDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKT-DKNVAIFSLEMGA 244 (448)
T ss_pred EEECCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCH
T ss_conf 10578278999827988673799984799876899999999999856-9808998177888
No 101
>PRK08082 consensus
Probab=96.35 E-value=0.0038 Score=39.55 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHH-CCCCCEEE
Q ss_conf 00023110023557-021541003675666624899999998850-57885268
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVF 183 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~-~~~~v~V~ 183 (478)
=+.||++.+|-++. +.+|+=+-|-|-+|+|||+++..++.|++. +...|.+|
T Consensus 185 Gi~TGf~~LD~lt~G~~~g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~f 238 (453)
T PRK08082 185 GIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIF 238 (453)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 554884888864147775857999867887578999999999998559948997
No 102
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.33 E-value=0.0023 Score=40.99 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=55.3
Q ss_pred HCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCC-CCCCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 301678753001100234544410000134200-0231100235-57021541003675666624899999998850578
Q gi|254780615|r 101 PVDDQGAIISSEKRAIHQPSPSYTEQSTDASIL-TTGIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 178 (478)
Q Consensus 101 PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L-~TGIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~ 178 (478)
-||..++. .+-++++.+|+-.-.+-+-++-.. .+|++++|.+ +-+--||.+.|.|.||.|||||...+-|=+-...+
T Consensus 339 ~lD~~~E~-D~G~~~~~RPv~G~~eFR~v~~~Yp~~~~~aL~~i~l~~~~G~~vALVGRSGSGKsTlv~LlPRFy~p~~G 417 (603)
T TIGR02203 339 LLDSPPEK-DTGTRALERPVRGRVEFRNVTFRYPGRDRPALDSISLVVEPGETVALVGRSGSGKSTLVNLLPRFYEPDSG 417 (603)
T ss_pred HCCCCCCC-CCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 12788543-47882688851124888766665378872412366651158735998706885389998552366045888
Q ss_pred CCE
Q ss_conf 852
Q gi|254780615|r 179 GYS 181 (478)
Q Consensus 179 ~v~ 181 (478)
++|
T Consensus 418 ~Il 420 (603)
T TIGR02203 418 QIL 420 (603)
T ss_pred CEE
T ss_conf 565
No 103
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=96.31 E-value=0.022 Score=34.49 Aligned_cols=52 Identities=27% Similarity=0.373 Sum_probs=35.4
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 557021541003675666624899999998850578852687621643459999998542
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~ 202 (478)
+-=+.+||-+.++|++|+|||.|+.-+.+...+. +--+.|.-. .++++++..
T Consensus 41 ~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~-g~~v~f~~~-------~~L~~~l~~ 92 (178)
T pfam01695 41 LDWIEQAENLLLLGPPGVGKTHLACALGHQACRA-GYSVLFTRT-------PDLVEQLKR 92 (178)
T ss_pred CCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEC-------HHHHHHHHH
T ss_conf 9742158768998999987899999999999986-985999961-------679999998
No 104
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.30 E-value=0.0034 Score=39.81 Aligned_cols=44 Identities=32% Similarity=0.420 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 00023110023557-021541003675666624899999998850
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
=+.||++.+|-++- +.+|+=+-|-|.+|+|||+++..++.|++.
T Consensus 176 Gi~TG~~~LD~~~~Gl~~g~LiIiaARPsmGKTafalnia~n~A~ 220 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVAL 220 (421)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 787880789998369998868999854678745999999999998
No 105
>PRK08760 replicative DNA helicase; Provisional
Probab=96.27 E-value=0.0042 Score=39.21 Aligned_cols=53 Identities=28% Similarity=0.378 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHH-HCCCCCEEEE
Q ss_conf 00023110023557-02154100367566662489999999885-0578852687
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFA 184 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~-~~~~~v~V~~ 184 (478)
=+.||++.+|.++. +-+|+=+-|=|-+++|||+++..++.|.+ +.+..|.+|-
T Consensus 211 Gi~TG~~~LD~~t~Gl~~G~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fS 265 (476)
T PRK08760 211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFS 265 (476)
T ss_pred ECCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3677968899744699877779998778874789999999999983799789970
No 106
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.25 E-value=0.023 Score=34.35 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=94.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-----EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003675666624899999998850578852687-----621643459999998542442001222344433231699971
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-----GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-----~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
.=|||++|+|||.++++.+.+.+ ...-..||+ +-.||=+-+.+ +. -..++...-.++|+.
T Consensus 15 TQiYGp~G~GKTn~c~~~a~~a~-~~Gk~v~YiDTEGGLS~ER~~q~~~-------~~-------~~D~e~~~~~~iv~~ 79 (223)
T TIGR02237 15 TQIYGPPGSGKTNICLILAVNAA-RQGKKVVYIDTEGGLSPERFKQIAE-------DR-------ALDPERVLSNVIVFE 79 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHH-------CC-------CCCHHHHHCCEEEEC
T ss_conf 89875899867899999999998-6189589996289832899999863-------05-------889888841535523
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC-C-CCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 76689678777777787768999866-9-967999715599987601245531144101101223566657888763177
Q gi|254780615|r 227 QMNEPPGARSRVALTGLTVAEHFRDQ-G-QDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT 304 (478)
Q Consensus 227 ~~~~~~~~r~~~~~~a~tiAEyfrd~-g-~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~ 304 (478)
.++=. +| -.|+.-++-|.+. | +-=|+++||+|-|=++-++ +.--.....--.+..++.-|+.=|.+.
T Consensus 80 ~~~f~--eQ----~~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~-----~d~nk~~~~~~~l~~Ql~~Ll~lArk~ 148 (223)
T TIGR02237 80 VFDFD--EQ----EVAIQKTSKLIDRDGDKADLVVVDSFTALYRLERS-----DDRNKQISLNRELARQLTLLLSLARKK 148 (223)
T ss_pred CCCHH--HH----HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 53567--89----99999999998606883314888153345420257-----860256799999999999999998764
Q ss_pred CC-CCEE-EEEEEEECC-CCCCCHHHHHHHHHCCCEEE-EEH
Q ss_conf 76-5325-666543047-66441058999975034256-411
Q gi|254780615|r 305 LK-GSIT-SVQAIYVPA-DDLTDPAPATSFTHLDATTV-LSR 342 (478)
Q Consensus 305 ~~-GSIT-~~~tV~~~~-dD~~dpi~~~~~si~Dg~iv-Lsr 342 (478)
+= -=|| .+|+---.+ -|.-.|+.-.+..|+-..|+ |+|
T Consensus 149 ~~AVviTNQvy~d~~~gG~~~~~P~GG~~L~h~~K~i~rLE~ 190 (223)
T TIGR02237 149 DLAVVITNQVYTDVNNGGSETLRPLGGHLLEHWSKVILRLEK 190 (223)
T ss_pred CCCEEEEEEEEEEECCCCCCEEEECCCHHHHHHHCEEEEEEC
T ss_conf 997899711588637797320100331134311021335644
No 107
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.21 E-value=0.092 Score=30.45 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 200023110023557-0215410036756666248999999988505788526876216434599
Q gi|254780615|r 131 SILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 194 (478)
Q Consensus 131 e~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~ 194 (478)
+-|.+....+|-++- +.+|+=+-|.|.+|+|||+++.+++.|.+..++.-+.|.-.=+...++.
T Consensus 11 ~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~ 75 (271)
T cd01122 11 EEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
T ss_conf 56658816688873799998089999689986999999999999997699089997049999999
No 108
>PRK08181 transposase; Validated
Probab=96.19 E-value=0.027 Score=33.90 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=33.6
Q ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECCCHHHHHHHHHHHHH
Q ss_conf 70215410036756666248999999988505788526-87621643459999998542
Q gi|254780615|r 145 PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-FAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 145 pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V-~~~iGER~rEv~e~~~e~~~ 202 (478)
=+-+++-+.++|++|+|||.|+.-+.+...+ .+..| |.- +.++++++..
T Consensus 102 fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~--~G~~V~f~~-------~~~L~~~L~~ 151 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTR-------TTDLVQKLQV 151 (269)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEE-------HHHHHHHHHH
T ss_conf 8864870899899998788999999999998--799399978-------9999999999
No 109
>PTZ00035 Rad51; Provisional
Probab=96.17 E-value=0.017 Score=35.20 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCC--CCCCEECCCCCCCCHHHHHHHHHHHHHH--CC---CCCEEEEEE-----
Q ss_conf 54441000013420002311002355702--1541003675666624899999998850--57---885268762-----
Q gi|254780615|r 119 PSPSYTEQSTDASILTTGIKVIDLISPYQ--KGGKIGLFGGAGVGKTVLIMELINNVAK--AH---GGYSVFAGV----- 186 (478)
Q Consensus 119 ~~p~~~~R~~i~e~L~TGIkaID~l~pig--~Gqr~gIfgg~GvGKT~l~~~~i~n~~~--~~---~~v~V~~~i----- 186 (478)
.+-..++|..---.+.||-+.+|.|+-=| -|.-.=|||.+|+|||.|+.+++-++|- .. .+-+||.-.
T Consensus 98 ta~~~~~~R~~~~~itTGs~~LD~LLGGGiet~sITEi~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFr 177 (350)
T PTZ00035 98 NAIDYHDARQNLIKFTTGSKQLDRLLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFR 177 (350)
T ss_pred CHHHHHHHHHHCEEECCCCHHHHHHHCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCC
T ss_conf 19999999864603575857888762789413858789727989789999999999048577779886279996889987
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 16434599999985424420012223444332316999717668967877777778776899986699679997155999
Q gi|254780615|r 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRF 266 (478)
Q Consensus 187 GER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~ 266 (478)
-||-++..+-+ .......+++..+.-+ .+..-.+.+. .-++-+..+.+=-|+++||+|-+
T Consensus 178 peRi~qIA~~~-------------gld~~~vL~nI~~ara-~n~ehq~~ll------~~~~~~~~e~~vrLlIVDSital 237 (350)
T PTZ00035 178 PERIVAIAKRY-------------GLHPTDCLNNIAYAKA-YNCDHQTELL------IDASAMMADARFALLIVDSATAL 237 (350)
T ss_pred HHHHHHHHHHC-------------CCCHHHHHHHEEEEEE-CCHHHHHHHH------HHHHHHHHCCCEEEEEEHHHHHH
T ss_conf 89999999870-------------9997998533223220-6878899999------99999851167589985445667
Q ss_pred HHH
Q ss_conf 876
Q gi|254780615|r 267 TQA 269 (478)
Q Consensus 267 a~A 269 (478)
-++
T Consensus 238 FR~ 240 (350)
T PTZ00035 238 YRS 240 (350)
T ss_pred HHH
T ss_conf 665
No 110
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=96.13 E-value=0.0094 Score=36.94 Aligned_cols=221 Identities=5% Similarity=-0.127 Sum_probs=142.5
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 71766896787777777877689998669967999715599987601245531144101101223566657888763177
Q gi|254780615|r 225 YGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT 304 (478)
Q Consensus 225 ~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~ 304 (478)
....+.+..++..|-++...++++.++..+|+-+..+.+.+++-+.+|..--+...+...+|+-..-+-+++.+++-..-
T Consensus 288 T~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYER 367 (588)
T COG1155 288 TVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYER 367 (588)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 36762576661888664353223199988763025677501389999999987335002886444416789999999985
Q ss_pred CCCCEE-------EEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHH----
Q ss_conf 765325-------666543047664410589999750342564115663188675322355431116201289999----
Q gi|254780615|r 305 LKGSIT-------SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHY---- 373 (478)
Q Consensus 305 ~~GSIT-------~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~---- 373 (478)
.+-+-| ..-||--...+...++..++-+.|=..+-+.-.|..+.+++-..|..+.+-.-. .+.+.-..
T Consensus 368 aG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS-~Y~~~~~~~~~~ 446 (588)
T COG1155 368 AGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYS-LYTEDLRSWYDE 446 (588)
T ss_pred CCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCHHEEEEEEEECCCCHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHC
T ss_conf 4723422788625899982577899998476521100355664200144453232376567377799-989888877640
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf ---99999999999899899999973655699889999999999999834997110000578973615999999999997
Q gi|254780615|r 374 ---DVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 374 ---~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
.--..+|..+.+.-+.++-++...+.-+.|.....-.....+.++++|.|.-.+.| .++.......--+.++
T Consensus 447 ~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQnaf-----d~vD~~~~~~kq~~mm 521 (588)
T COG1155 447 NVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQNAF-----DEIDAYCSLRKQYLML 521 (588)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCHHHHHHHH
T ss_conf 25823899999999998877999999998574236628889999999999888765156-----7310138889999999
Q ss_pred C
Q ss_conf 6
Q gi|254780615|r 451 Q 451 (478)
Q Consensus 451 ~ 451 (478)
.
T Consensus 522 ~ 522 (588)
T COG1155 522 K 522 (588)
T ss_pred H
T ss_conf 9
No 111
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.043 Score=32.61 Aligned_cols=57 Identities=26% Similarity=0.472 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 200023110023557--021541003675666624899999998850578852687621643
Q gi|254780615|r 131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190 (478)
Q Consensus 131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~ 190 (478)
..+.||+.-+|-.+= +.+|+=++|=|++|.|||||+.+++.+.++.. -+.|+ .||-+
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYV-sGEES 131 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYV-SGEES 131 (456)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC--CEEEE-ECCCC
T ss_conf 4235781888765367723661799736898779899999999987059--57999-67767
No 112
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.10 E-value=0.0061 Score=38.15 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=30.2
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 355702154100367566662489999999885057885
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v 180 (478)
.=+.+-+|++++|.|++|+|||||+.-+.+-..-.++.+
T Consensus 334 isl~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I 372 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI 372 (569)
T ss_pred CCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 656888997899879999987999999997764267874
No 113
>PRK08006 replicative DNA helicase; Provisional
Probab=96.09 E-value=0.0056 Score=38.39 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 00023110023557-02154100367566662489999999885057-8852687
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFA 184 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~-~~v~V~~ 184 (478)
=+.||++.+|.++. +-+|+=+-|=|-+++|||+++..++.|.+..+ .-+.+|-
T Consensus 206 Gi~TGf~~LD~~t~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fS 260 (471)
T PRK08006 206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS 260 (471)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3668838898641688217389999469987699999999999986699579981
No 114
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.07 E-value=0.016 Score=35.34 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=16.8
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 003675666624899999998
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n 172 (478)
+.++|++|||||+|+.-+++.
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~ 73 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANE 73 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 788789999888999999984
No 115
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.06 E-value=0.005 Score=38.76 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=29.1
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 355702154100367566662489999999885057885
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v 180 (478)
.=+.+-+|++++|+|.+|+|||||+.-+..-..-..+.+
T Consensus 56 Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I 94 (282)
T cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI 94 (282)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 489984999999999999819999999957872786589
No 116
>PRK07004 replicative DNA helicase; Provisional
Probab=96.06 E-value=0.0058 Score=38.33 Aligned_cols=59 Identities=25% Similarity=0.211 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 00023110023557-0215410036756666248999999988505788526876216434
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 191 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~r 191 (478)
=+.||++.+|-++- +.+|+=+-|=|-+++|||+++..++.|++..+ +..|...--|-++
T Consensus 195 Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~~-g~~V~~FSLEMs~ 254 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY-GLPVAVFSMEMPG 254 (460)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCH
T ss_conf 38679388986523898775799973687642699999999998725-8866998477999
No 117
>PRK08840 replicative DNA helicase; Provisional
Probab=96.04 E-value=0.0058 Score=38.32 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 00023110023557-02154100367566662489999999885057885268762164345
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 192 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rE 192 (478)
=+.||++.+|-++. +-+|+=+-|=|-+++|||+++..++.|.+..+ +..|...--|=+.|
T Consensus 199 Gi~TG~~~LD~~~~Gl~~G~LiviaaRPsmGKTalalnia~n~a~~~-~~~v~~fSlEMs~~ 259 (464)
T PRK08840 199 GVSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIFSLEMPAE 259 (464)
T ss_pred CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCHH
T ss_conf 68889899987536987576799983798736899999999999965-99679976779989
No 118
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.03 E-value=0.0043 Score=39.15 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
|.=+.+-+|++++|+|.+|+|||||+..+..-..
T Consensus 26 ~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 2588986999999999999879999999998728
No 119
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.01 E-value=0.011 Score=36.51 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 410036756666248999999988505
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINNVAKA 176 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n~~~~ 176 (478)
+++.|.|.+|+||||++..++...++.
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~g 27 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQG 27 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 989998279898999999999999869
No 120
>PRK06526 transposase; Provisional
Probab=95.99 E-value=0.03 Score=33.65 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECCCHHHHHHHHHHHH
Q ss_conf 235570215410036756666248999999988505788526-8762164345999999854
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-FAGVGERTREGNDLYHEMI 201 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V-~~~iGER~rEv~e~~~e~~ 201 (478)
-.+-=|-++|-+.|+|++|+|||.|+.-+.+...+ .+..| |.- +.++++++.
T Consensus 90 a~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~--~G~~v~f~~-------~~~L~~~L~ 142 (254)
T PRK06526 90 GTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ--AGHRVLFAT-------AAQWVARLA 142 (254)
T ss_pred HCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEE-------HHHHHHHHH
T ss_conf 63717765887899899998689999999999998--699679987-------799999999
No 121
>PRK08694 consensus
Probab=95.98 E-value=0.0058 Score=38.32 Aligned_cols=58 Identities=24% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 00023110023557-021541003675666624899999998850578852687621643
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~ 190 (478)
=+.||++.+|.++- +-+|+=+-|=|-+|+|||+++..++.|.+... ...|...--|=+
T Consensus 200 Gi~TG~~~LD~~t~Gl~~G~LiVIaaRPsmGKTalalnia~~~a~~~-~~~V~~fSLEMs 258 (468)
T PRK08694 200 GVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEG-KLPVAVFSMEMG 258 (468)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCC
T ss_conf 15579688987644888784799961786537899999999999847-984799778899
No 122
>PRK07263 consensus
Probab=95.95 E-value=0.007 Score=37.78 Aligned_cols=44 Identities=30% Similarity=0.415 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 00023110023557-021541003675666624899999998850
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
=+.||++.+|-++- +-+|+=+-|=|.+++|||+++..++.|++.
T Consensus 185 Gi~TGf~~LD~~t~Gl~~GdLiviaaRPsmGKTa~alnia~~iA~ 229 (453)
T PRK07263 185 GLPTGFRDLDKITTGLHPDQLIILAARPAVGKTAFVLNIAQNVGT 229 (453)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 675885879977328997868999727888478999999999998
No 123
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.95 E-value=0.0065 Score=38.00 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=28.4
Q ss_pred CCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 00235-5702154100367566662489999999885
Q gi|254780615|r 139 VIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 139 aID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
+++.+ +.+-+|++++|.|++|+|||||+.-+.+-..
T Consensus 357 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~LL~gly~ 393 (581)
T PRK11176 357 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD 393 (581)
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 0106633579994431228999867899999985366
No 124
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.0038 Score=39.55 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=29.2
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 55702154100367566662489999999885057885268
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
=+.+.+|...||+|.||+|||||+.-++- ..+...+-+.|
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~G-l~~p~~G~I~~ 66 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAG-LEKPSSGSILL 66 (252)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEE
T ss_conf 59964897899984898988899999956-56788862898
No 125
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.93 E-value=0.064 Score=31.45 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=44.9
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10036756666248999999988505788526876216434599999985424420012223444332316999717668
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
=..|.|+.|+|||+++..++.+.. .+-.+++.+=-..=+..|++..+...-- . . ....+.
T Consensus 45 ~~lltGe~GtGKTtllr~l~~~l~---~~~~~~~~i~~~~l~~~~ll~~i~~~lg---------~---~-----~~~~~~ 104 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD---QERVVAAKLVNTRVDAEDLLRMVAADFG---------L---E-----TEGRDK 104 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CCCEEEEEECCCCCCHHHHHHHHHHHCC---------C---C-----CCCCCH
T ss_conf 599972998988999999998459---3454899976999999999999999859---------8---9-----889899
Q ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEEC
Q ss_conf 96787777777877689998---669967999715
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFR---DQGQDVLFFVDN 262 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfr---d~g~dVll~~Ds 262 (478)
+... + .+-+|+. .+|+.+++++|.
T Consensus 105 ~~~~--~------~l~~~L~~~~~~g~~~vliIDE 131 (269)
T TIGR03015 105 AALL--R------ELEDFLIEQFAAGKRALLVVDE 131 (269)
T ss_pred HHHH--H------HHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999--9------9999999999669946999724
No 126
>PRK09165 replicative DNA helicase; Provisional
Probab=95.90 E-value=0.0081 Score=37.36 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 00023110023557-0215410036756666248999999988505
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKA 176 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~ 176 (478)
=+.||++.+|-++- +-+|+=+-|=|-+++|||+++..++.|++++
T Consensus 187 Gi~TGf~~LD~~t~G~~~GdLiIIAARPsmGKTafaLniA~n~A~~ 232 (484)
T PRK09165 187 GISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA 232 (484)
T ss_pred CEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 3315844599871588877379996079997789999999999987
No 127
>PRK06904 replicative DNA helicase; Validated
Probab=95.89 E-value=0.0071 Score=37.76 Aligned_cols=46 Identities=30% Similarity=0.314 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 00023110023557-02154100367566662489999999885057
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~ 177 (478)
=+.||++.+|-++. +-+|+=+-|=|.+++|||+++..++.|.+..+
T Consensus 203 Gi~TG~~~LD~~t~Gl~~g~LiViAaRPsmGKTa~alnia~n~A~~~ 249 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS 249 (472)
T ss_pred EECCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 32289799974415887575799973798756899999999999955
No 128
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.87 E-value=0.011 Score=36.60 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=22.9
Q ss_pred CCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 1002-355702154100367566662489999999
Q gi|254780615|r 138 KVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 138 kaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+++| .=+.+.+|++++|.|++|+|||||+.-+.+
T Consensus 364 ~vL~~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g 398 (588)
T PRK11174 364 TLAGPLNFTLPAGQRVALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred EECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 51036469974997899989998649999999987
No 129
>PRK09519 recA recombinase A; Reviewed
Probab=95.86 E-value=0.028 Score=33.86 Aligned_cols=53 Identities=28% Similarity=0.517 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 20002311002355702---1541003675666624899999998850578852687
Q gi|254780615|r 131 SILTTGIKVIDLISPYQ---KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 131 e~L~TGIkaID~l~pig---~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
+.+.||.-.+|.-+-+| ||-=+-|||+-..|||+|+..+|.+.||. +++|+|.
T Consensus 39 ~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~IAeaQK~-GG~aAfI 94 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGVAAFI 94 (790)
T ss_pred CEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 4450461678887616884660499987897765899999999999853-9979999
No 130
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.85 E-value=0.013 Score=36.01 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=73.7
Q ss_pred CCCCEEEECCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC--C-----------CCCCCHHHCCCC------
Q ss_conf 788888977984898859237655887875230167875300110023--4-----------544410000134------
Q gi|254780615|r 70 SRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIH--Q-----------PSPSYTEQSTDA------ 130 (478)
Q Consensus 70 ~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~--~-----------~~p~~~~R~~i~------ 130 (478)
+.|..+.++|+.++..-++.+++-|=|.+|.-.|.--|+...+ .|+. + +.|.|.=|++-.
T Consensus 38 ~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegE-LPldflGsRFeGl~PPVV~~p~F~IRkkA~~vfTLD 116 (315)
T TIGR02782 38 RLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGE-LPLDFLGSRFEGLLPPVVEAPSFAIRKKAVRVFTLD 116 (315)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEEC-CCCCHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCH
T ss_conf 0679730016611789999999999876446043578626610-751112011004687755655101110224104707
Q ss_pred CCCCCCC---CCCCCCCCCCCC-CCEECCCCCCCCHHHHHHHHHHHHHH-CCCC-CEEEEEECCCHHHH
Q ss_conf 2000231---100235570215-41003675666624899999998850-5788-52687621643459
Q gi|254780615|r 131 SILTTGI---KVIDLISPYQKG-GKIGLFGGAGVGKTVLIMELINNVAK-AHGG-YSVFAGVGERTREG 193 (478)
Q Consensus 131 e~L~TGI---kaID~l~pig~G-qr~gIfgg~GvGKT~l~~~~i~n~~~-~~~~-v~V~~~iGER~rEv 193 (478)
+-.+-|| +..|.|.-...- +-++|.||-|+|||||+.-++..+++ +..+ -.|+. |=++|.
T Consensus 117 dYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P~dR~vIi---EDT~El 182 (315)
T TIGR02782 117 DYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANALLAEIAKLNDPDDRVVII---EDTAEL 182 (315)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE---ECCHHH
T ss_conf 776404455789999999997129889981458857999999999885216999618998---547132
No 131
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.85 E-value=0.076 Score=30.99 Aligned_cols=90 Identities=24% Similarity=0.253 Sum_probs=64.0
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 21541003675666624899999998850578852687621643459999998542442001222344433231699971
Q gi|254780615|r 147 QKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
-+|.-+-+.|-||+|||||+..+.....+ ....++.+=|..-| +++.
T Consensus 5 ~kg~viW~TGLsGSGKTTiA~~l~~~L~~--~g~~~~~LDGD~lR---~~~~---------------------------- 51 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLDGDELR---EIFG---------------------------- 51 (176)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEECCHHHH---HHHC----------------------------
T ss_conf 88679997899999899999999999997--59977998868999---8736----------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 7668967877777778776899986699679997155999876
Q gi|254780615|r 227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269 (478)
Q Consensus 227 ~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A 269 (478)
...-+.-.|..-..-...+|.++.+||-.|++-.=|.++-.++
T Consensus 52 ~~gfs~~~R~~n~~r~~~lak~l~~~g~~vIvs~isp~~~~R~ 94 (176)
T PRK05541 52 HSGYDKESRIEMALKRAKLAAFLADQGMIVIVTTISMFNEIYA 94 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 5898999999999999999999864698036752279899999
No 132
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.80 E-value=0.0052 Score=38.60 Aligned_cols=37 Identities=32% Similarity=0.569 Sum_probs=29.1
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3557021541003675666624899999998850578
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 178 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~ 178 (478)
.=+.+-+|++++|.|++|+|||||+..+..-.....+
T Consensus 21 i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G 57 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 5899869999999999987599999999861766788
No 133
>PRK05636 replicative DNA helicase; Provisional
Probab=95.78 E-value=0.0093 Score=36.98 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 00023110023557-021541003675666624899999998850
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
-+.||++.+|-++- +-+|+=+-|=|-+++|||+|+..++.|++.
T Consensus 249 Gi~TGf~~LD~~t~Gl~~G~LiIiAARPsmGKTalAlnia~n~A~ 293 (507)
T PRK05636 249 GIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTIALDFMRSASI 293 (507)
T ss_pred EEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 565880889975508883567999737878668999999999998
No 134
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=95.75 E-value=0.008 Score=37.41 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=57.8
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 57021541003675666624899999998850578852687621643459999998542442001222344433231699
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSL 223 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~ 223 (478)
+.+-.|.|+.|.|+||+|||||++-+..-..=.++.+. +=|.- ..++. .....|.|.
T Consensus 382 L~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vt---l~G~~-------~~~~~-------------~~evrr~v~ 438 (566)
T TIGR02868 382 LDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT---LDGVP-------VSSLS-------------EDEVRRRVS 438 (566)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEE---ECCCC-------HHHCC-------------CCHHEHHEE
T ss_conf 41138860898668876578999999840289999178---77732-------43257-------------311000003
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 97176689678777777787768999866996799971559998760124553114410110122356665788876317
Q gi|254780615|r 224 LYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT 303 (478)
Q Consensus 224 v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~ 303 (478)
+++|- +=.-++|+-|- +++++|-..-| |--.++.+.+||.|=
T Consensus 439 ~~aQ~---------aHlF~ttvr~N--------------------------LrlarpdaaaG---DtdeE~~~aL~~vgL 480 (566)
T TIGR02868 439 VFAQD---------AHLFDTTVREN--------------------------LRLARPDAAAG---DTDEELLAALERVGL 480 (566)
T ss_pred ECCCC---------CCCCCCCHHHH--------------------------HHHCCCCCCCC---CCHHHHHHHHHHHCC
T ss_conf 12788---------62110547878--------------------------87318888998---888999999997158
No 135
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.74 E-value=0.0046 Score=38.98 Aligned_cols=32 Identities=31% Similarity=0.563 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-+|+.++|+|++|+|||||+..+..-
T Consensus 23 dIsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 60789869989999999998699999999728
No 136
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.70 E-value=0.0038 Score=39.55 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 235570215410036756666248999999988
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|.=+.+-+|+.++|.|++|+|||||+..+....
T Consensus 23 ~isl~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 148997699899999999985899999981895
No 137
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.68 E-value=0.0058 Score=38.30 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=22.5
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.=+.+-+|++++|.|++|+|||||+.-+.+-
T Consensus 360 isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~ 390 (575)
T PRK11160 360 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 390 (575)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 1589769988999889997599999998623
No 138
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.005 Score=38.73 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
|.=+.+.+|++++|.|.+|+|||||+.-+..-..
T Consensus 20 ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~ 53 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6089987999999998999829999999966766
No 139
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.68 E-value=0.052 Score=32.05 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 154100367566662489999999885
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
...-++|.|++|+|||+++..+++...
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 998089989999886599999999712
No 140
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.67 E-value=0.0067 Score=37.91 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=38.8
Q ss_pred CCCCCCHHHCCCCCCCCC---CCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 454441000013420002---31100235-57021541003675666624899999998
Q gi|254780615|r 118 QPSPSYTEQSTDASILTT---GIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 118 ~~~p~~~~R~~i~e~L~T---GIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
...|+.++-+-.+--+.+ .++|+|.. +.+.+|+..||.|.+|+|||||+..+..-
T Consensus 7 ~~~pplLeV~nL~v~f~~~~g~v~av~~Vsf~i~~GEilgivGeSGsGKSTl~~~i~gl 65 (330)
T PRK09473 7 ATVPLLLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred CCCCCEEEEECEEEEECCCCCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99884799956599964899528986674768889989999868987799999999768
No 141
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.66 E-value=0.0057 Score=38.36 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 235570215410036756666248999999988
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|.=+.+-+|++++|.|.+|+|||||+.-+..-.
T Consensus 21 ~isl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 558997699999999999998999999982386
No 142
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.0038 Score=39.50 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=78.4
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE-----EEEECCCH-------HHHHHHHHHHHHCCCCCCC
Q ss_conf 35570215410036756666248999999988505788526-----87621643-------4599999985424420012
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-----FAGVGERT-------REGNDLYHEMIDSKVNIDP 209 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V-----~~~iGER~-------rEv~e~~~e~~~~~~~~~~ 209 (478)
.=+.+.+|.|++|+|+.|+|||||+..++-...-..+.+.+ ++-..+.. ..+.+.+..+.........
T Consensus 331 vsl~i~~GeriaIvG~NGsGKSTLlk~L~G~l~p~~G~i~~~~~v~igy~~Q~~~~~l~~~~t~l~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410 (638)
T ss_pred CCCEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHH
T ss_conf 75056378479997478713889999972887888856998444433411076776506112499999885725469999
Q ss_pred CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH--HHHHHHHCCCCHHHHCC
Q ss_conf 2234443323169997176689678777777787768999866996799971559998760--12455311441011012
Q gi|254780615|r 210 RKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAN--SEISALLGRIPSAVGYQ 287 (478)
Q Consensus 210 ~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~--rEisl~~g~~P~~~gYp 287 (478)
....+.-.+...-+.--...-|-++|.|.+.+.+.+ +.-|| |++|-=|+|-.-. ..+-- .-..|+
T Consensus 411 r~~L~~f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~------~~pnl-LiLDEPTNhLDi~s~e~Le~------aL~~y~ 477 (638)
T PRK10636 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW------QRPNL-LLLDEPTNHLDLDMRQALTE------ALIDFE 477 (638)
T ss_pred HHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH------CCCCE-EEEECCCCCCCHHHHHHHHH------HHHHCC
T ss_conf 999986688977863911339999999999999982------59988-99858876688899999999------998489
Q ss_pred HHHHH-HH-HHHHHHHCC----CCCCCEEEEEEEEECCCCCCCHH
Q ss_conf 23566-65-788876317----77653256665430476644105
Q gi|254780615|r 288 STLAL-EM-GELQERITT----TLKGSITSVQAIYVPADDLTDPA 326 (478)
Q Consensus 288 ~~~f~-~~-~~l~ERag~----~~~GSIT~~~tV~~~~dD~~dpi 326 (478)
|++.. -| -.++++.+. ..+|.|+.+ .+++++|.
T Consensus 478 Gtvl~VSHDr~fl~~~~~~~~~~~~g~~~~~------~G~~~~y~ 516 (638)
T PRK10636 478 GALVVVSHDRHLLRSTTDDLYLVHDRKVEPF------DGDLEDYQ 516 (638)
T ss_pred CEEEEEECCHHHHHHHCCEEEEEECCEEEEC------CCCHHHHH
T ss_conf 8399997899999975278999969978994------78989999
No 143
>PRK06321 replicative DNA helicase; Provisional
Probab=95.64 E-value=0.011 Score=36.59 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 00023110023557-02154100367566662489999999885057-8852687
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFA 184 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~-~~v~V~~ 184 (478)
=+.||++-+|-++. +-+|+=+-|=|-+|+|||+++..++.|++..+ ..|.+|-
T Consensus 208 GipTGf~~LD~lt~Gl~~GdliviaaRPsmGKTalalnia~~~a~~~~~~v~~fS 262 (472)
T PRK06321 208 GIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFS 262 (472)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 2256848899985598867579985389997799999999999985699469975
No 144
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.62 E-value=0.0076 Score=37.54 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 235570215410036756666248999999988505788
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~ 179 (478)
|.=+.+-+|++++|.|++|+|||||+..+..- ....+.
T Consensus 22 ~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl-~~~~G~ 59 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGD 59 (275)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCE
T ss_conf 50799879999999999999799999999603-578953
No 145
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.0055 Score=38.47 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=25.5
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 557021541003675666624899999998
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=+.+-+|++++|.|.+|+|||||+..+..-
T Consensus 22 sl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl 51 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 899859989999999998399999999767
No 146
>KOG2028 consensus
Probab=95.59 E-value=0.033 Score=33.40 Aligned_cols=215 Identities=21% Similarity=0.239 Sum_probs=103.3
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 10036756666248999999988505788526-87621643459999998542442001222344433231699971766
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-FAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMN 229 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V-~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~ 229 (478)
-+-+.|++|+|||+|+.-++.+ +|.+.-..| ..+.--...+++++++.-+...
T Consensus 164 SmIlWGppG~GKTtlArlia~t-sk~~SyrfvelSAt~a~t~dvR~ife~aq~~~------------------------- 217 (554)
T KOG2028 164 SMILWGPPGTGKTTLARLIAST-SKKHSYRFVELSATNAKTNDVRDIFEQAQNEK------------------------- 217 (554)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-------------------------
T ss_conf 0588669987658899999860-57774279997414566188999999988787-------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH------------CCCCHHHHCCHHHHHHHHHH
Q ss_conf 896787777777877689998669967999715599987601245531------------14410110122356665788
Q gi|254780615|r 230 EPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALL------------GRIPSAVGYQSTLALEMGEL 297 (478)
Q Consensus 230 ~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~------------g~~P~~~gYp~~~f~~~~~l 297 (478)
--.++...||+|-+-||-.++..+-|-. -|-|+ |...+.|
T Consensus 218 --------------------~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPS--------Fqln~aL 269 (554)
T KOG2028 218 --------------------SLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPS--------FQLNAAL 269 (554)
T ss_pred --------------------HHHCCEEEEEEHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCC--------CCHHHHH
T ss_conf --------------------652440698737765532321100342130670699853668976--------0112778
Q ss_pred HHHHCCC--CC-----------CCEEEEEEEEECCCC-------CCCHHHHHHHHHCCCEEE-------EEHHHHHCCCC
Q ss_conf 8763177--76-----------532566654304766-------441058999975034256-------41156631886
Q gi|254780615|r 298 QERITTT--LK-----------GSITSVQAIYVPADD-------LTDPAPATSFTHLDATTV-------LSRQISEKGIY 350 (478)
Q Consensus 298 ~ERag~~--~~-----------GSIT~~~tV~~~~dD-------~~dpi~~~~~si~Dg~iv-------Lsr~la~~g~~ 350 (478)
+-|+--+ ++ -.|..+.--.-+.+. +.|-|-+-+-.+.||--- ++-.++..+.-
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g 349 (554)
T KOG2028 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSG 349 (554)
T ss_pred HHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 73160667336888999999999987632102568899983124568899999870473188887789999998875247
Q ss_pred CCCCCCCCCC----------CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 7532235543----------111620128999999999999999899899999973655699889999999999999834
Q gi|254780615|r 351 PAIDPLDSNS----------SMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMS 420 (478)
Q Consensus 351 PAId~~~S~S----------r~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~~~~~~i~r~~~i~~fL~ 420 (478)
-+-+++.|.- -+- +-.|++||+....+-+...--.++..+--+.-+-++.++ -+-.+||+.+|-+
T Consensus 350 ~~~~~~lSidDvke~lq~s~~~Y--Dr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEd---PLYVARRlvR~AS 424 (554)
T KOG2028 350 QSSRVLLSIDDVKEGLQRSHILY--DRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGED---PLYVARRLVRFAS 424 (554)
T ss_pred CCCCCEECHHHHHHHHHHCCCEE--CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
T ss_conf 76564002888999985312000--455305778999998760177655279999999716887---0799999998751
Q ss_pred CCCC
Q ss_conf 9971
Q gi|254780615|r 421 QPFH 424 (478)
Q Consensus 421 Qp~~ 424 (478)
.+.-
T Consensus 425 EDIG 428 (554)
T KOG2028 425 EDIG 428 (554)
T ss_pred CCCC
T ss_conf 0337
No 147
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.58 E-value=0.01 Score=36.70 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 235570215410036756666248999999988505788
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~ 179 (478)
|.=+.+-+|++++|.|++|+|||||+.-+.+-..-.++.
T Consensus 359 ~is~~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~ 397 (593)
T PRK10790 359 NINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (593)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 601044899789987999886899999999855678994
No 148
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.0067 Score=37.90 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 1002355702154100367566662489999999
Q gi|254780615|r 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 138 kaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+.+|.=+.+.+|+...|+|++|+|||||+..+..
T Consensus 13 ~~v~i~l~i~~Ge~~~ilGpSGsGKSTLl~li~G 46 (211)
T cd03298 13 QPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred EEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8962788988998999999999559999999976
No 149
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.56 E-value=0.009 Score=37.07 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 235570215410036756666248999999988
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|.=+.+-+|++++|.|++|+|||||+.-+.+-.
T Consensus 353 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~gly 385 (585)
T PRK13657 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLHRVF 385 (585)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 703897599889998898986999999986015
No 150
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.55 E-value=0.0096 Score=36.89 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 10023557021541003675666624899999998850578852687621643459999998542442001222344433
Q gi|254780615|r 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAV 217 (478)
Q Consensus 138 kaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~ 217 (478)
++++-+..+-+|+.++|+|++|+|||||+.+++--..-..+.+ .+- |.+ +..
T Consensus 14 ~~l~~~~~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i-~~~--g~~---------------~~~---------- 65 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWD--GIT---------------PVY---------- 65 (177)
T ss_pred EEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE-EEC--CCC---------------EEC----------
T ss_conf 9865899558998999989999999999999968867889946-666--861---------------221----------
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHH
Q ss_conf 23169997176689678777777787768999866996799971559998760124553114410110122356665788
Q gi|254780615|r 218 GSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGEL 297 (478)
Q Consensus 218 ~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l 297 (478)
.. ...+-|-++|-|++.+.+ ++ +..+++ ++| ||-+. --+..-..+.++
T Consensus 66 ~p------q~~~LSGGqrQRv~iAra-l~-----~~p~ll-lLD-----------------EPts~--LD~~~r~~i~~~ 113 (177)
T cd03222 66 KP------QYIDLSGGELQRVAIAAA-LL-----RNATFY-LFD-----------------EPSAY--LDIEQRLNAARA 113 (177)
T ss_pred CC------CCCCCCHHHHHHHHHHHH-HH-----CCCCEE-EEC-----------------CCCCC--CCHHHHHHHHHH
T ss_conf 55------515079899999999999-82-----399999-974-----------------88653--899999999999
Q ss_pred HHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCC
Q ss_conf 8763177765325666543047664410589999750342564115663188
Q gi|254780615|r 298 QERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGI 349 (478)
Q Consensus 298 ~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~ 349 (478)
+.+... ++..|.+.+ .-|+ ..+..+-|--+|++-+....|+
T Consensus 114 ik~l~~--~~~~Tvl~v----sHdl-----~~a~~~aDrI~vl~g~~~~~g~ 154 (177)
T cd03222 114 IRRLSE--EGKKTALVV----EHDL-----AVLDYLSDRIHVFEGEPGVYGI 154 (177)
T ss_pred HHHHHH--HCCCEEEEE----CCCH-----HHHHHHCCEEEEEECCCCEEEE
T ss_conf 999999--659779998----5889-----9999869999999389826988
No 151
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.072 Score=31.13 Aligned_cols=102 Identities=15% Similarity=0.297 Sum_probs=56.3
Q ss_pred CCCCCCCCC---EECCCCCCCCHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 557021541---00367566662489999999885057885-26876216434599999985424420012223444332
Q gi|254780615|r 143 ISPYQKGGK---IGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVG 218 (478)
Q Consensus 143 l~pig~Gqr---~gIfgg~GvGKT~l~~~~i~n~~~~~~~v-~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~ 218 (478)
|.|.-+|.+ +.|.|.+|+|||+.+..++.......... .+|+=|=+ -++....+.++.+.-.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~-~~t~~~i~~~i~~~~~------------- 98 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE-LRTPYQVLSKILNKLG------------- 98 (366)
T ss_pred HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCHHHHHHHHHHHHC-------------
T ss_conf 99985589986079988999873289999999997331567579995130-7878799999999826-------------
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 316999717668967877777778776899986699679997155999876
Q gi|254780615|r 219 SKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269 (478)
Q Consensus 219 ~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A 269 (478)
+.|.........=..+-+++..+++.+++++|.+-.....
T Consensus 99 -----------~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 99 -----------KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK 138 (366)
T ss_pred -----------CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf -----------8997676326899999997774187599997647654154
No 152
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.49 E-value=0.13 Score=29.52 Aligned_cols=108 Identities=17% Similarity=0.289 Sum_probs=60.2
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 215410036756666248999999988505788-5268762164345999999854244200122234443323169997
Q gi|254780615|r 147 QKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLY 225 (478)
Q Consensus 147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~-v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~ 225 (478)
.++..+.|.|.+|+|||+.....+...+....+ ..||+=| .+-+.-..++.++.+.-. +.
T Consensus 53 ~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc-~~~~t~~~i~~~i~~~L~--------~~---------- 113 (394)
T PRK00411 53 SRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINC-QIDRTRYAILSEIARSLF--------GH---------- 113 (394)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCHHHHHHHHHHHHC--------CC----------
T ss_conf 99984799889999899999999999997468965999969-668989999999999956--------99----------
Q ss_pred ECCCCCHHHHHHHHHHHHHHH-------HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
Q ss_conf 176689678777777787768-------9998669967999715599987601245531144101101223566657888
Q gi|254780615|r 226 GQMNEPPGARSRVALTGLTVA-------EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQ 298 (478)
Q Consensus 226 ~~~~~~~~~r~~~~~~a~tiA-------Eyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ 298 (478)
+ .|..|.... +++...++.+++++|.+-.+.. ..+.++.|.+.++.
T Consensus 114 -----~------~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~----------------~~~~~vLY~L~r~~ 166 (394)
T PRK00411 114 -----P------PPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVE----------------KEGNDVLYSLLRAH 166 (394)
T ss_pred -----C------CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC----------------CCCCHHHHHHHHCC
T ss_conf -----8------98778789999999999861669758999965540203----------------66508999998540
Q ss_pred HH
Q ss_conf 76
Q gi|254780615|r 299 ER 300 (478)
Q Consensus 299 ER 300 (478)
|.
T Consensus 167 ~~ 168 (394)
T PRK00411 167 EE 168 (394)
T ss_pred CC
T ss_conf 22
No 153
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.48 E-value=0.0068 Score=37.85 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-+|++++|.|.+|+|||||+..+..-
T Consensus 32 ~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl 63 (226)
T cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 53899829999999999998499999999645
No 154
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.48 E-value=0.2 Score=28.28 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=90.2
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE-
Q ss_conf 1541003675666624899999998850578852687621643459999998542442001222344433231699971-
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG- 226 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~- 226 (478)
-|+=+.|.|+-|+|||+|.+.++-..- +.+..|..-.-|- .++||+..|..-..... .. .+...-+++.
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L--~~g~~v~yvsTe~--T~refi~qm~sl~ydv~--~~----~l~G~l~~~~~ 96 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFL--MNGYRVTYVSTEL--TVREFIKQMESLSYDVS--DF----LLSGRLLFFPV 96 (235)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECH--HHHHHHHHHHHCCCCCH--HH----HHCCEEEEEEE
T ss_conf 676999988898548899999999887--0895489998403--59999998886388716--87----75062689993
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf ---76689678777777787768999866996799971559998760124553114410110122356665788876317
Q gi|254780615|r 227 ---QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT 303 (478)
Q Consensus 227 ---~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~ 303 (478)
..+..+-.+..- . --+.|+-+-..+||++ +||++-++.--.|...+ ..++.+-+|..
T Consensus 97 ~~~~~~~~~~~~~~~-L--~~l~~~~k~~~~dViI-IDSls~~~~~~~~~~vl------------~fm~~~r~l~d---- 156 (235)
T COG2874 97 NLEPVNWGRRSARKL-L--DLLLEFIKRWEKDVII-IDSLSAFATYDSEDAVL------------NFMTFLRKLSD---- 156 (235)
T ss_pred CCCCCCCCHHHHHHH-H--HHHHHHHHHHCCCEEE-EECCCHHHHCCCHHHHH------------HHHHHHHHHHH----
T ss_conf 245422573778999-9--9997557752377899-95343776526499999------------99999999872----
Q ss_pred CCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHH
Q ss_conf 77653256665430476644105899997503425641156
Q gi|254780615|r 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQI 344 (478)
Q Consensus 304 ~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~l 344 (478)
.|- |.+-|| -.+-+++-.-.-++++-|.++.|+.+-
T Consensus 157 --~gK-vIilTv--hp~~l~e~~~~rirs~~d~~l~L~~~~ 192 (235)
T COG2874 157 --LGK-VIILTV--HPSALDEDVLTRIRSACDVYLRLRLEE 192 (235)
T ss_pred --CCC-EEEEEE--CHHHCCHHHHHHHHHHHHEEEEEEHHH
T ss_conf --897-899994--734337899999987520258987023
No 155
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.47 E-value=0.0067 Score=37.90 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 235570215410036756666248999999988
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|.=+.+-+|++++|.|++|+|||||+..+..-.
T Consensus 20 ~i~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~ 52 (173)
T cd03246 20 NVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 769998599999999999980999999996666
No 156
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.0056 Score=38.43 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=34.5
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 110023-5570215410036756666248999999988505788526876
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
|+|+|. =+.+.+|...+|+|.||+|||||+..+... ..-.++-+.|-+
T Consensus 28 v~Av~~Vsl~i~~GE~lgiVGeSGsGKSTL~~~l~gl-~~p~~G~I~~~G 76 (327)
T PRK11308 28 VKALDGVSFNLERGKTLAVVGESGCGKSTLARLLTMI-ETPTGGELYYQG 76 (327)
T ss_pred EEEECCEEEEECCCCEEEEECCCCHHHHHHHHHHHCC-CCCCCCEEEECC
T ss_conf 8885060679889999999999831999999999569-998863799899
No 157
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.0076 Score=37.54 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=30.6
Q ss_pred CCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1100235-57021541003675666624899999998
Q gi|254780615|r 137 IKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
++|+|.. +.+.+|+..||+|.+|+||||++..++.-
T Consensus 20 v~Av~~Vsf~i~~GEilgivGeSGsGKSTl~~~ilgl 56 (327)
T PRK11022 20 FKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (327)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9998441879889999999999987899999999748
No 158
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.45 E-value=0.0072 Score=37.68 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
|.=+.+-+|++++|.|.+|+|||||+.-+..-..
T Consensus 19 ~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~ 52 (218)
T cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7699986999999999999809999999855565
No 159
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=95.39 E-value=0.1 Score=30.17 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 0023557021541003675666624899999998
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.+|.|...-+|+..-+.|.||||||+|+..++-+
T Consensus 161 gl~~L~~~L~~k~tv~~G~SGVGKSSLIN~L~p~ 194 (351)
T PRK12289 161 GLEALLKQLRNKITVVAGPSGVGKSSLINRLIPD 194 (351)
T ss_pred CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 8999999875986999817988788988763741
No 160
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.006 Score=38.23 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 11002-355702154100367566662489999999
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
-+|+| .=+.+-+|..++|+|++|+||||++.++..
T Consensus 14 ~~al~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~g 49 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 889830276886998999999999569999999975
No 161
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.36 E-value=0.0076 Score=37.53 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 235570215410036756666248999999988
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|.=+.+-+|++++|.|++|+|||||+.-+.+-.
T Consensus 341 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y 373 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 804798599889998999997799999982896
No 162
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.0065 Score=37.98 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=26.5
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.=+.+-+|+.++|+|++|+|||||+..+..-
T Consensus 18 isl~i~~GE~v~iiG~nGaGKSTLl~~i~Gl 48 (233)
T PRK10771 18 FTLTVERGEQVAILGPSGAGKSTLLNLIAGF 48 (233)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 7889889989999999998199999999659
No 163
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.0072 Score=37.71 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+-+||+++|+|.+|+|||||+.-+..
T Consensus 19 ~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g 49 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 5689986999999999999989999999743
No 164
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.33 E-value=0.0062 Score=38.12 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE-----EEEECCC------HHHHHHHHHHHHHC-CC---
Q ss_conf 235570215410036756666248999999988505788526-----8762164------34599999985424-42---
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-----FAGVGER------TREGNDLYHEMIDS-KV--- 205 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V-----~~~iGER------~rEv~e~~~e~~~~-~~--- 205 (478)
|.=+.+-+|.|++|.|+.|+|||||+..++-...-..+.+.+ ++-.-+- ...+.+.+.+-... ..
T Consensus 337 ~vsl~i~~Ge~ialvG~NGsGKSTLlk~l~G~l~p~~G~i~~g~~~~i~y~~Q~~~~l~~~~tv~~~l~~~~~~~~~~~~ 416 (632)
T PRK11147 337 DFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQYRAELDPEKTVMDNLAEGKQEVMVNGK 416 (632)
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEHHHHHHCCCCCCHHHHHHHCCHHCCCCHH
T ss_conf 53333578877999889884277999986066689987799899870775515476459768699999732321011558
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 00122234443323169997176689678777777787768999866996799971559998760124553114410110
Q gi|254780615|r 206 NIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVG 285 (478)
Q Consensus 206 ~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~g 285 (478)
..........-.+...-+-..-..-|-++|.|.+.+.+.+ +..| +|++|-=|+|-.-..--.|- -+-..
T Consensus 417 ~r~~~~~L~~f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~------~~pn-lLiLDEPTNhLDi~s~e~Le----~aL~~ 485 (632)
T PRK11147 417 PRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL------KPSN-LLILDEPTNDLDVETLELLE----ELLDS 485 (632)
T ss_pred HHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHC------CCCC-EEEEECCCCCCCHHHHHHHH----HHHHH
T ss_conf 9999999998577988963915539999999999999857------7997-89998987657999999999----99985
Q ss_pred CCHHHH-HHHHH-HHHHHCCC-----CCCCEEEE
Q ss_conf 122356-66578-88763177-----76532566
Q gi|254780615|r 286 YQSTLA-LEMGE-LQERITTT-----LKGSITSV 312 (478)
Q Consensus 286 Yp~~~f-~~~~~-l~ERag~~-----~~GSIT~~ 312 (478)
|++++. --|=| +++|.++. .+|.|+.+
T Consensus 486 y~Gtvl~VSHDr~fl~~~~~~~~~~~~~g~~~~~ 519 (632)
T PRK11147 486 YQGTLLLVSHDRQFVDNTVTECWIFEGNGKIGEY 519 (632)
T ss_pred CCCEEEEEECCHHHHHHHCCEEEEEECCCEEEEC
T ss_conf 8983999979899998534569999569817988
No 165
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.009 Score=37.06 Aligned_cols=38 Identities=34% Similarity=0.649 Sum_probs=28.5
Q ss_pred CCCCCCC--CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 0231100--2355702154100367566662489999999
Q gi|254780615|r 134 TTGIKVI--DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 134 ~TGIkaI--D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.-|.|.| |.=+.|..|+|+||+|..|+|||||+..+.-
T Consensus 10 ~~G~~~ll~~vsl~I~~Ge~vgLVG~NGsGKSTLlklL~G 49 (638)
T PRK10636 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred EECCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 9899289867679998998999988999889999999808
No 166
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.31 E-value=0.0079 Score=37.43 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-+|++++|.|++|+|||||+..+..-
T Consensus 22 ~isl~i~~G~~v~ivG~sGsGKSTLl~ll~gl 53 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 45999879999999999998599999999672
No 167
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.0088 Score=37.13 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+.+|..++|.|.+|+|||||+..+..-
T Consensus 25 ~isl~i~~GE~vaivG~nGsGKSTL~k~l~Gl 56 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 30768879989999999996599999999728
No 168
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.28 E-value=0.0053 Score=38.55 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=32.2
Q ss_pred HHCCCCCCCCCCC---CCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 0001342000231---100-2355702154100367566662489999999
Q gi|254780615|r 125 EQSTDASILTTGI---KVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 125 ~R~~i~e~L~TGI---kaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+-+-++..+.+|- .++ |.=+.+-+|+.++|.|++|+|||||+..+..
T Consensus 8 ev~~lsk~y~~~~~~~~vL~~isl~i~~GE~v~ivG~sGsGKSTLl~~i~G 58 (228)
T PRK10584 8 EVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred EEECEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 996849998999827999847388999998999999998589999999966
No 169
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.012 Score=36.34 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=29.9
Q ss_pred CCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1002-355702154100367566662489999999885
Q gi|254780615|r 138 KVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 138 kaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
++++ .=+++..|+|+.|.|.+|+||||+++-+.++..
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred CHHHCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 42105651325887688877999878999999972358
No 170
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.25 E-value=0.011 Score=36.55 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+.+|+-++|+|++|+|||||+..++.-
T Consensus 19 ~vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl 50 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 31788849979999889999899999999646
No 171
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.01 Score=36.66 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 110023-55702154100367566662489999999
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
..++|. =+.+-+|...+|+|++|+|||||+..+.-
T Consensus 13 ~~vl~~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~G 48 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 889876174887998999999999839999999977
No 172
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.24 E-value=0.01 Score=36.68 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 2355702154100367566662489999999885057885268762
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~i 186 (478)
|.=+.+-+|++++|.|.+|+|||||+.-+..- .+...+-+.+-++
T Consensus 39 ~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl-~~p~~G~I~idg~ 83 (257)
T cd03288 39 HVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM-VDIFDGKIVIDGI 83 (257)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCEEEECCE
T ss_conf 53899879999999999998199999999605-6678888999989
No 173
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.23 E-value=0.0085 Score=37.21 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|++++|.|++|+|||||+..+..
T Consensus 19 ~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~G 49 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 4588988999999995899988999999869
No 174
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.23 E-value=0.063 Score=31.49 Aligned_cols=149 Identities=20% Similarity=0.250 Sum_probs=79.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003675666624899999998850578-----852687621643459999998542442001222344433231699971
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~-----~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
-.++|.+|||||.+.-.++..++..+. +.-||. ++-..++++
T Consensus 211 PiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~s---------------------------------LDlg~LvAG 257 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS---------------------------------LDLGLLQAG 257 (852)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEE---------------------------------EEHHHHHHC
T ss_conf 74657999879999999999997699986774385678---------------------------------678888640
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7668967-877777778776899986699679997155999876012455311441011012235666578887631777
Q gi|254780615|r 227 QMNEPPG-ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305 (478)
Q Consensus 227 ~~~~~~~-~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~ 305 (478)
+.-.--. .|++ .+-+.....+.++.||+|.+-...-|+.. .+++ +.+.++--+ ..
T Consensus 258 tkyRGeFEeRlk------~ii~ei~~~~~~iILFIDEiHtlvGAG~~--------------~G~~--DaaNiLKPa--La 313 (852)
T TIGR03345 258 ASVKGEFENRLK------SVIDEVKASPQPIILFIDEAHTLIGAGGQ--------------AGQG--DAANLLKPA--LA 313 (852)
T ss_pred CCCCCHHHHHHH------HHHHHHHHCCCCEEEEEEHHHHHCCCCCC--------------CCCC--CHHHHHHHH--HH
T ss_conf 357635999999------99999984899769996348775289988--------------8862--278875178--73
Q ss_pred CCCEEEEEEEEE-------CC----------CCCCCHHHHHHHHHCCCEE--------------------EEEHHHHHCC
Q ss_conf 653256665430-------47----------6644105899997503425--------------------6411566318
Q gi|254780615|r 306 KGSITSVQAIYV-------PA----------DDLTDPAPATSFTHLDATT--------------------VLSRQISEKG 348 (478)
Q Consensus 306 ~GSIT~~~tV~~-------~~----------dD~~dpi~~~~~si~Dg~i--------------------vLsr~la~~g 348 (478)
.|.|..|.+-.. +- =.+.+|-.+.+..||.|.- -||...-.-+
T Consensus 314 rGelr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR 393 (852)
T TIGR03345 314 RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred CCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
T ss_conf 78734998357899988864268899624755279998799999999879998554796870899999999987215545
Q ss_pred CCC--CCCCCC
Q ss_conf 867--532235
Q gi|254780615|r 349 IYP--AIDPLD 357 (478)
Q Consensus 349 ~~P--AId~~~ 357 (478)
..| |||++.
T Consensus 394 ~LPDKAIDLlD 404 (852)
T TIGR03345 394 QLPDKAVSLLD 404 (852)
T ss_pred CCCHHHHHHHH
T ss_conf 58427899999
No 175
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=95.23 E-value=0.2 Score=28.21 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 54100367566662489999999885057885268762164345999999854244200122234443323169997176
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQM 228 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~ 228 (478)
.+=+.|.|.+++|||+|+...+.+.. ......+|.-+-++..+ .. +.++........ . ..........
T Consensus 20 ~~~ivi~G~RR~GKTsLi~~~~~~~~-~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~l~~--~--~~~~~~~~~~----- 87 (223)
T pfam01637 20 YPIIVVYGPRRCGKTALLREFLEELR-ELGYRVIYYDPLRREFE-EK-LDRFEEAKRLAE--A--LGDALPKIGI----- 87 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CCCCEEEEEECHHHHHH-HH-HHHHHHHHHHHH--H--HHHHCCCCCC-----
T ss_conf 71899986887879999999998633-46852899951444379-99-998888899999--9--8765123322-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 689678777777787768999866996799971559998
Q gi|254780615|r 229 NEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 229 ~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a 267 (478)
..+ .....+-..+-++..+.|+++++++|.....+
T Consensus 88 -~~~---~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~ 122 (223)
T pfam01637 88 -AKS---KLAFLSLTLLFELLKRKGKKIAIIIDEVQYAI 122 (223)
T ss_pred -CCC---CCHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf -211---20788999999999855996599970167764
No 176
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.22 E-value=0.0099 Score=36.80 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=28.7
Q ss_pred CCCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 31100-2355702154100367566662489999999
Q gi|254780615|r 136 GIKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+..++ |.=+.+.+|.-..|+|+||+|||||+.+++-
T Consensus 16 ~~~al~~v~l~v~~Ge~~~llGpSG~GKtTlLr~iaG 52 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9988866486998999999999995359999999976
No 177
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.22 E-value=0.0085 Score=37.22 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2355702154100367566662489999999885057885268
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
|.=+.+-+|+-.+|+|++|+|||||+..+..-. +-+.+-+.|
T Consensus 26 ~is~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~-~p~~G~I~~ 67 (269)
T PRK11831 26 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGEILF 67 (269)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEEEE
T ss_conf 716688799899999399975999999996798-889866999
No 178
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.22 E-value=0.01 Score=36.75 Aligned_cols=36 Identities=33% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1100-23557021541003675666624899999998
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
-+++ |.=+.+-+|+..+|.|++|+|||||+..+..-
T Consensus 13 ~~vL~~vsl~i~~Gei~~iiG~nGaGKSTLl~~i~Gl 49 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9786403788869989999889999899999999568
No 179
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.011 Score=36.40 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=27.5
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 1100-2355702154100367566662489999999
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.+++ |.=+.+.+|+-+.|+|+||||||||+..++-
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 687605035877997999989997889999999968
No 180
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.0081 Score=37.35 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.5
Q ss_pred CCCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 231100235-57021541003675666624899999998
Q gi|254780615|r 135 TGIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 135 TGIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+.+++++.. +.+.+|..++|.|.+|+|||||+..+..-
T Consensus 18 ~~v~aL~~is~~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl 56 (277)
T PRK13642 18 SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 988664430799889989999999996899999999638
No 181
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.19 E-value=0.0089 Score=37.08 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=26.3
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.=+.+-+|++++|.|.+|+|||||+..+..-
T Consensus 23 isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl 53 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 4899869989999999999899999999679
No 182
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.0082 Score=37.33 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.3
Q ss_pred CCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 10023-557021541003675666624899999998
Q gi|254780615|r 138 KVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 138 kaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+|+|- =+.+.+|+.++|+|++|+|||||+..+..-
T Consensus 21 ~aL~~isl~i~~GE~v~iiG~nGsGKSTLl~~l~GL 56 (287)
T PRK13637 21 KALDNVNIEIEDGEFVALIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 175320769879989999999993999999999739
No 183
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.17 E-value=0.011 Score=36.52 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=16.5
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 570215410036756666248999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+.+.+|+|+||+|..|+|||||+.-+.
T Consensus 24 l~I~~Ge~vgLVG~NGsGKSTLl~iL~ 50 (632)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILS 50 (632)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 999899899999999987999999983
No 184
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=95.17 E-value=0.024 Score=34.22 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=51.3
Q ss_pred HHHHCCCCCCCCCHHHHCCCCCCCC------------CHHHCCCCCCCC-CCCC--CCCCC-CCCCCCCCEECCCCCCCC
Q ss_conf 7523016787530011002345444------------100001342000-2311--00235-570215410036756666
Q gi|254780615|r 98 IGEPVDDQGAIISSEKRAIHQPSPS------------YTEQSTDASILT-TGIK--VIDLI-SPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 98 lG~PLDg~g~i~~~~~~pi~~~~p~------------~~~R~~i~e~L~-TGIk--aID~l-~pig~Gqr~gIfgg~GvG 161 (478)
+.+-+|.+.+.......|+...++. .++-.-++ ... -|-+ +++.+ +++--|.+..|.|.||.|
T Consensus 312 ~~~~l~~~~~~p~~~~~p~~~~~~~~~~~~a~DG~~P~l~~~~v~-~~y~~G~~~pa~~~~sf~~~pG~~vAl~G~SGaG 390 (570)
T TIGR02857 312 LFTVLDAAEPRPLAGKAPLTAAPASALGRLAADGADPSLEFEGVS-VAYAPGRDEPALRPVSFTVEPGERVALVGPSGAG 390 (570)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEE-EECCCCCHHHCCCCCCEEECCCCEEEEEECCCCC
T ss_conf 999973688877887667765443010010036998407887516-8627888010378854166387048886279997
Q ss_pred HHHHHHHHHHHHHHCCCCCEEE---EEEC
Q ss_conf 2489999999885057885268---7621
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVF---AGVG 187 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~---~~iG 187 (478)
||||+..+..- ..-+.+.+.+ +++|
T Consensus 391 KSTLL~lLLGf-~~P~~G~i~v~~~Gg~~ 418 (570)
T TIGR02857 391 KSTLLNLLLGF-VEPTEGAIVVERDGGIN 418 (570)
T ss_pred HHHHHHHHHCC-CCCCCCEEEEECCCCCC
T ss_conf 88999999715-76446468874488853
No 185
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.01 Score=36.67 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=28.4
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 11002-355702154100367566662489999999
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
++|+| .=+.+-+|+..+|+|++|+|||||+..+.-
T Consensus 17 ~~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~G 52 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999967188987998999999999579999999975
No 186
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.011 Score=36.46 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2355702154100367566662489999999885057885268
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
|.=+.+-+|+.++|+|++|+|||||+..+.. ..+...+-+.|
T Consensus 27 ~is~~i~~Ge~vaiiG~sGsGKSTLl~ll~G-l~~p~~G~I~~ 68 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG-IEKVKSGEIFY 68 (269)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEE
T ss_conf 4589985998999999999979999999964-97998509999
No 187
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.0094 Score=36.95 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 110023-557021541003675666624899999998
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.+++|- =+.+.+|.-.+|+|++|+|||||+..+.--
T Consensus 14 ~~~L~dvsl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl 50 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9888131779869989999999984699999999759
No 188
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.11 E-value=0.012 Score=36.14 Aligned_cols=126 Identities=19% Similarity=0.288 Sum_probs=67.5
Q ss_pred CCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1100235-570215410036756666248999999988505788526876216434599999985424420012223444
Q gi|254780615|r 137 IKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGS 215 (478)
Q Consensus 137 IkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~ 215 (478)
++|+|.+ +++.+||.+||.|-||+||||+...+.+- .... +-+.|.+---.+..-++ |.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL-~~s~-G~I~F~G~~i~~~~~~~----mr-------------- 359 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQ-GEIRFDGQDIDGLSRKE----MR-------------- 359 (534)
T ss_pred EEEECCCEEEECCCCEEEEEECCCCCCCHHHHHHHHH-CCCC-CEEEECCCCCCCCCHHH----HH--------------
T ss_conf 0775254367538976777705889811599999852-4768-63897881166648566----20--------------
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHH
Q ss_conf 33231699971766896787777777877689998669967999715599987601245531144101101223
Q gi|254780615|r 216 AVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQST 289 (478)
Q Consensus 216 ~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~ 289 (478)
....+--+|+-.-.-+---|+. .+--|+|-++-.+.+ +-=.+-..|.+.|.+|+++ .|..+.-||-.
T Consensus 360 plR~~mQvVFQDPygSLsPRmt---V~qII~EGL~vh~~~-ls~~eR~~rv~~aL~EVGL---Dp~~r~RYPhE 426 (534)
T COG4172 360 PLRRRMQVVFQDPYGSLSPRMT---VGQIIEEGLRVHEPK-LSAAERDQRVIEALEEVGL---DPATRNRYPHE 426 (534)
T ss_pred HHHHHCEEEEECCCCCCCCCCC---HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCC---CHHHHHCCCCC
T ss_conf 3555226997178777884348---999864214115878-9878899999999998299---94575238865
No 189
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.011 Score=36.58 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=27.1
Q ss_pred CCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 1002-355702154100367566662489999999
Q gi|254780615|r 138 KVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 138 kaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.++| .=+.+.+|.-+.|+|+||+||||++.+++-
T Consensus 20 ~al~~vsl~i~~Ge~~~llGpSG~GKTTlLr~iaG 54 (351)
T PRK11432 20 TVIDNLDLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 89844574988998999999996499999999976
No 190
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.011 Score=36.43 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2355702154100367566662489999999885057885268
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
|.=+.+.+|..++|+|+||+|||||+..+.. .-+-+.+-+.|
T Consensus 42 ~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~G-L~~p~~G~I~~ 83 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINR-LIEPTSGKVLI 83 (269)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEE
T ss_conf 7475888999999998998489999999975-99999759999
No 191
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.012 Score=36.20 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 23557021541003675666624899999998850578852687
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
|.=+.+-+|...+|+|++|+|||||+..+..- -+-..+-+.+-
T Consensus 18 ~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL-~~p~~G~I~~~ 60 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-LRPDSGEVLID 60 (235)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCCEEEEC
T ss_conf 60648879989999999997299999999759-99898589999
No 192
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.09 E-value=0.011 Score=36.40 Aligned_cols=30 Identities=33% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 235570215410036756666248999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
|.=+.+.+|.|+||+|..|+|||||+.-+.
T Consensus 25 ~vsl~i~~Ge~vgLvG~NGaGKSTLlriLa 54 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMA 54 (556)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 818999689899999999971999999984
No 193
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.07 E-value=0.012 Score=36.20 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|.-+.|+|+||+|||||+.+++-
T Consensus 23 dvsl~i~~GE~~~llGpSG~GKTTlLr~iaG 53 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7671999998999999997459999999977
No 194
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.06 E-value=0.013 Score=36.03 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1100235570215410036756666248999999988505788
Q gi|254780615|r 137 IKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179 (478)
Q Consensus 137 IkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~ 179 (478)
=-.+|.=+++-=-+.++|||.||+|||||+.- |-...+-+.+
T Consensus 11 ~f~Ld~~~~~pg~GvtAlFG~SGsGKTtli~~-iaGL~rp~~G 52 (361)
T TIGR02142 11 DFELDVDLTLPGQGVTALFGRSGSGKTTLIRL-IAGLTRPDEG 52 (361)
T ss_pred CEEEEEEEECCCCEEEEEECCCCCHHHHHHHH-HHHCCCCCCC
T ss_conf 54777765328740687125899707899999-8731675668
No 195
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.012 Score=36.13 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+-+|..++|+|+||+|||||+..+..
T Consensus 18 ~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~G 48 (178)
T cd03229 18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7076988998999999999839999999985
No 196
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.05 E-value=0.012 Score=36.24 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+.+|+..+|.|++|+|||||+..+..-
T Consensus 25 ~is~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl 56 (225)
T PRK10247 25 NINFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 51799859969999999999999999999646
No 197
>KOG0057 consensus
Probab=95.05 E-value=0.021 Score=34.70 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=26.9
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 570215410036756666248999999988
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
++|.+|-|++|.|++|+||||++..+.+=.
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 886489789897899987889999999974
No 198
>PRK09183 transposase/IS protein; Provisional
Probab=95.03 E-value=0.094 Score=30.37 Aligned_cols=51 Identities=29% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 57021541003675666624899999998850578852687621643459999998542
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~ 202 (478)
-=+-+++-+.++|++|||||.|+.-+.+...+ .+..|+-- ...++++++..
T Consensus 96 ~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~--~G~~v~f~------~~~~L~~~L~~ 146 (258)
T PRK09183 96 SFIERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFT------TAADLLLQLST 146 (258)
T ss_pred CHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEE------EHHHHHHHHHH
T ss_conf 16655886799899998689999999999998--79939997------89999999999
No 199
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.03 E-value=0.011 Score=36.43 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 235570215410036756666248999999988505788526876
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
|.=+.+-+|..++|.|.+|+|||||+..+..- -+-..+-+.+-+
T Consensus 29 ~Isl~i~~GE~v~iiG~nGsGKSTL~r~l~gl-~~P~~G~I~i~G 72 (281)
T PRK13633 29 DVNLEVKKGEFLVILGHNGSGKSTIAKHMNAL-LLPSEGKVYVDG 72 (281)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCCEEEECC
T ss_conf 40768879989999999998499999999758-878885699999
No 200
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.03 E-value=0.01 Score=36.71 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2355702154100367566662489999999885057885268
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
|.=+.+-+|..++|+|.+|+|||||+..+..- -+...+-+.+
T Consensus 22 ~vsl~i~~GE~vaivG~nGsGKSTL~~~l~Gl-l~p~~G~I~i 63 (276)
T PRK13650 22 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-LEAESGSIII 63 (276)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCEEEEE
T ss_conf 75879989989999999998799999999738-8988608999
No 201
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.01 E-value=0.013 Score=35.98 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+-+|+-.+|+|+||+|||||+..+.-
T Consensus 16 ~vsl~i~~Ge~~~i~GpSGsGKSTLL~~i~g 46 (206)
T TIGR03608 16 DLNLTIEKGKMVAIVGESGSGKSTLLNIIGL 46 (206)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 8077986998999987999709999999975
No 202
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.01 Score=36.65 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCCC-CCC--CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 4200-023--1100235570215410036756666248999999988505788526876
Q gi|254780615|r 130 ASIL-TTG--IKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 130 ~e~L-~TG--IkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
.|+| .|| +-+=|.=+.+.+|.-.+|+|+||+|||||+.++..- -+-..+-+.+-+
T Consensus 32 ~ei~~~tg~~vAv~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~gL-~~Pt~G~I~i~G 89 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-IEPTRGQVLIDG 89 (400)
T ss_pred HHHHHHHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCCEEEECC
T ss_conf 9999864999989740768879999999999984699999999759-998981899999
No 203
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.99 E-value=0.0097 Score=36.83 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=29.8
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 5570215410036756666248999999988505788526
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V 182 (478)
=+.+-+|+..+|+|+.|+|||||+..+..-.....+.+.+
T Consensus 19 s~~i~~Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i~i 58 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 7898599899999999986999999997687889758999
No 204
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=94.98 E-value=0.012 Score=36.14 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 311002-355702154100367566662489999999885057885268
Q gi|254780615|r 136 GIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 136 GIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
+.+++| .=+.+.+|+..+|+|++|+|||||+..+..... -+.+-+.|
T Consensus 18 ~~~aL~~Vs~~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~-p~~G~I~~ 65 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-PDAGEVHY 65 (258)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEE
T ss_conf 9788712277887997999988899889999999856788-88873997
No 205
>PRK10744 phosphate transporter subunit; Provisional
Probab=94.97 E-value=0.014 Score=35.86 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 231100235-5702154100367566662489999999
Q gi|254780615|r 135 TGIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 135 TGIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
-+..+++.+ +.+.+|+..+|+|++|+|||||+..+..
T Consensus 21 g~~~aL~~vsl~i~~Ge~~~liG~nGaGKSTLlk~i~g 58 (257)
T PRK10744 21 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNK 58 (257)
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99767814289988998999999999819999999987
No 206
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.96 E-value=0.013 Score=36.06 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-.|++++|+|.+|+|||||+..+..-
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 50277679988999879999889999998367
No 207
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=94.94 E-value=0.015 Score=35.63 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 35570215410036756666248999999
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+=+++-+|-++.|+|+||.|||||+.-++
T Consensus 17 F~L~V~~Ge~VAi~GpSGAGKSTLLnLiA 45 (213)
T TIGR01277 17 FDLSVEDGERVAILGPSGAGKSTLLNLIA 45 (213)
T ss_pred EECCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 50413017768887589862788987786
No 208
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.012 Score=36.34 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=25.6
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.=+.+-+|++++|.|++|+|||||+.-+..-
T Consensus 22 inl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 52 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2999879999999999998099999999668
No 209
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=94.91 E-value=0.014 Score=35.82 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=32.2
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 11002-3557021541003675666624899999998850578852687
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
++++| .=+.+.+|...+|+|.||+|||||+..+.. ..+-..+-+.|-
T Consensus 25 ~~~l~~vs~~i~~GE~l~ivGeSGsGKSTL~r~i~g-l~~p~sG~I~~~ 72 (266)
T PRK10419 25 QAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVG-LESPSQGNISWR 72 (266)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEEC
T ss_conf 688858175888998999999999779999999966-999996299889
No 210
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.012 Score=36.13 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.5
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 557021541003675666624899999998
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=+.+-+|+.++|+|++|+|||||+..+..-
T Consensus 30 sl~i~~Ge~vaivG~nGsGKSTLlk~l~Gl 59 (273)
T PRK13632 30 SFTINEGEYVAILGHNGSGKSTISKILTGL 59 (273)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889849989999999998699999999738
No 211
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.90 E-value=0.014 Score=35.90 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 23557021541003675666624899999998850578852
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
|.=+.+.+|+..+|.|++|+|||||+..+.. ..+-+.+-+
T Consensus 22 ~isl~i~~Ge~~~iiG~sGsGKTTll~~i~G-l~~p~~G~I 61 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRPTSGEV 61 (218)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEE
T ss_conf 6289986998999999999869999999966-999996499
No 212
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=94.89 E-value=0.026 Score=34.01 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=29.2
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCC--CEEEEEECCCHH
Q ss_conf 10036756666248999999988505788--526876216434
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGG--YSVFAGVGERTR 191 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~--v~V~~~iGER~r 191 (478)
-..|||+.|.||||||..++.+.+|...+ ..|++.==-||-
T Consensus 518 hT~IfG~~G~GKTtLl~fL~a~~~ky~~~~a~~~~~fDkd~g~ 560 (931)
T TIGR00929 518 HTLIFGPTGSGKTTLLNFLLAQLQKYKPNFALTIFAFDKDRGM 560 (931)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
T ss_conf 7778888898469999999999742488987069998878982
No 213
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.86 E-value=0.014 Score=35.76 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 20002311002-3557021541003675666624899999998850578852687
Q gi|254780615|r 131 SILTTGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 131 e~L~TGIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
-.+..|++|+| .=+.+-+|.-++|+|+||+|||||+..+.. .-+-..+-+.+.
T Consensus 8 k~y~~~~~aL~~vsl~i~~Ge~v~i~GpSGsGKSTLl~~i~g-l~~p~sG~i~i~ 61 (214)
T cd03292 8 KTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYK-EELPTSGTIRVN 61 (214)
T ss_pred EEECCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEEC
T ss_conf 997989899822177985998999997999539999999962-989886499999
No 214
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.86 E-value=0.014 Score=35.75 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=27.6
Q ss_pred CCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 3110023-55702154100367566662489999999
Q gi|254780615|r 136 GIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+.+|+|. =+.+.+|...+|+|++|+|||||+..++-
T Consensus 16 ~~~al~~vsl~i~~Ge~~~llGpsG~GKTTllr~iaG 52 (358)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (358)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9979825277988998999999986369999999976
No 215
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.86 E-value=0.017 Score=35.27 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=33.3
Q ss_pred HCCCCCCCCCCCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 0013420002311002-355702154100367566662489999999
Q gi|254780615|r 126 QSTDASILTTGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 126 R~~i~e~L~TGIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
-+-++..+. +..++| .=+.+.+|--.-++|+|||||||++.+|+-
T Consensus 8 ~~~v~k~yg-~~~al~~isl~i~~Gef~tlLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 8 IRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEEEEECC-CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 974566628-7267732144544886899989988888999999967
No 216
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.85 E-value=0.23 Score=27.77 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=62.0
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 15410036756666248999999988505788526876216434599999985424420012223444332316999717
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ 227 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~ 227 (478)
||.-+=|.|-||+|||||+..+.....+. ...++.+=|..-|+ .+. ..
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~--~~~~~~LDGD~~R~---~l~---------------------------~d 48 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQ--GISVYVLDGDNVRH---GLN---------------------------KD 48 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECCHHHHC---CCC---------------------------CC
T ss_conf 98899988989999999999999999975--99779976887750---125---------------------------77
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 6689678777777787768999866996799971559998760
Q gi|254780615|r 228 MNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAN 270 (478)
Q Consensus 228 ~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~ 270 (478)
-.-+.-.|...+.....+|.++.+||-.|++-+=|.++-.+..
T Consensus 49 lgys~~~R~~n~~r~~~lak~l~~~g~~VIvs~isp~~~~R~~ 91 (157)
T pfam01583 49 LGFSEEDRTENIRRIAEVAKLFADAGLIVITSFISPYRADRDM 91 (157)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 7989899999999999999998428965887215789999999
No 217
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=94.83 E-value=0.017 Score=35.20 Aligned_cols=121 Identities=22% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 35570215410036756666248999999988505788526876216434599999985424420012223444332316
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKC 221 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~t 221 (478)
.=+.+--|+.+.|.|.||.||||||.++-.|+.= +++.+-+=-.|+ ..|+.. ..+.. --+..++|
T Consensus 27 v~l~V~aGEcv~L~G~SGaGKSTlLk~lYaNYlp-~~G~i~~~H~G~----~~DL~~-a~pr~---------vl~vRr~t 91 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGA----WVDLAQ-ASPRE---------VLEVRRKT 91 (224)
T ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEEEECCH----HHHHHC-CCHHH---------HHHHHHHH
T ss_conf 4378736735885368887678999976630474-686777762404----767507-68457---------78773003
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCC--CHH-HHCCHHHHH
Q ss_conf 9997176689678777777787-7689998669967999715599987601245531144--101-101223566
Q gi|254780615|r 222 SLLYGQMNEPPGARSRVALTGL-TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRI--PSA-VGYQSTLAL 292 (478)
Q Consensus 222 v~v~~~~~~~~~~r~~~~~~a~-tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~--P~~-~gYp~~~f~ 292 (478)
+=.++|-= |..==-+|+ =+||=....|- ..+.|+.+...+|.|. |=| =-|||+.||
T Consensus 92 iGYVSQFL-----RViPRvsalevV~ePL~~~G~----------~~~~A~~~A~~LL~rLniPERLW~LpPaTFS 151 (224)
T TIGR02324 92 IGYVSQFL-----RVIPRVSALEVVAEPLLERGV----------PREAARARARELLARLNIPERLWSLPPATFS 151 (224)
T ss_pred CCCEEEEE-----EECCCCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCC
T ss_conf 35155530-----312886728888787987289----------5899999999999755740244288788656
No 218
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.83 E-value=0.015 Score=35.60 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=30.8
Q ss_pred CCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 1002-355702154100367566662489999999885057885268
Q gi|254780615|r 138 KVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 138 kaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
+|+| .=+.+-+|..++|+|++|+|||||+..+.. .-+-..+-+.+
T Consensus 21 ~aL~~vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~G-Ll~p~~G~I~~ 66 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA-LLKPTTGTVTV 66 (286)
T ss_pred CEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEE
T ss_conf 06624177986998999999999819999999970-78888875999
No 219
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.015 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|.-.+|+|++|+|||||+..++.
T Consensus 17 ~vs~~v~~Ge~~~iiGpSGsGKSTLlr~i~G 47 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 1487988998999999996359999999974
No 220
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.78 E-value=0.015 Score=35.55 Aligned_cols=120 Identities=21% Similarity=0.358 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 235570215410036756666248999999988505788526876-2164345999999854244200122234443323
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGS 219 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~-iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~ 219 (478)
|.=+.+-||.=.+|+||||+|||||+.-++--....++.+-|+.- |-+=+++ +.++ ..+
T Consensus 26 ~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~--~~~~------------------ir~ 85 (263)
T COG1127 26 GVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEE--ELYE------------------IRK 85 (263)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHCCCHH--HHHH------------------HHH
T ss_conf 73135507818999889886899999998565789887599847641104988--9999------------------984
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH-HHHHHHH----HCCCCH-HHHCCHHHHHH
Q ss_conf 16999717668967877777778776899986699679997155999876-0124553----114410-11012235666
Q gi|254780615|r 220 KCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA-NSEISAL----LGRIPS-AVGYQSTLALE 293 (478)
Q Consensus 220 ~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A-~rEisl~----~g~~P~-~~gYp~~~f~~ 293 (478)
|.-+++ |.-|-|+.+++.| ||-+-+-.-|++-+. .||+.+. .|=+|. ..-||..+.--
T Consensus 86 r~GvlF---------Q~gALFssltV~e-------NVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGG 149 (263)
T COG1127 86 RMGVLF---------QQGALFSSLTVFE-------NVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGG 149 (263)
T ss_pred HEEEEE---------ECCCCCCCCCHHH-------HHHEEHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCH
T ss_conf 351786---------0561235565457-------310006864259999999999999986499856666393320435
Q ss_pred HHH
Q ss_conf 578
Q gi|254780615|r 294 MGE 296 (478)
Q Consensus 294 ~~~ 296 (478)
|.+
T Consensus 150 M~K 152 (263)
T COG1127 150 MRK 152 (263)
T ss_pred HHH
T ss_conf 889
No 221
>PRK08116 hypothetical protein; Validated
Probab=94.78 E-value=0.13 Score=29.43 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCCC-CCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 000231100235570215-41003675666624899999998850578852687621643459999998542
Q gi|254780615|r 132 ILTTGIKVIDLISPYQKG-GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 132 ~L~TGIkaID~l~pig~G-qr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~ 202 (478)
.+....+-.+.|-.+.+- .-+.+.|++|+|||.|+.-|++.... ++--++|.-+ .+|+.+++.
T Consensus 90 a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~-~g~~V~~~~~-------~~ll~~lk~ 153 (262)
T PRK08116 90 AYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIE-KGVPVVFVNV-------PELLNRIKS 153 (262)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEH-------HHHHHHHHH
T ss_conf 999999999989873646861899898999899999999999998-7993999889-------999999999
No 222
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.78 E-value=0.017 Score=35.17 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-+|+..+|+|++|+|||||+..+..=
T Consensus 18 ~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL 49 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 40678879989999999998199999999744
No 223
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.012 Score=36.24 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=31.0
Q ss_pred CCCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 23110023-5570215410036756666248999999988505788
Q gi|254780615|r 135 TGIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179 (478)
Q Consensus 135 TGIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~ 179 (478)
.|..++|. =+.+-+|.-.+|+|++|+|||||+..+.. ..+...+
T Consensus 12 ~g~~~L~~isl~i~~Ge~~~iiGpsGsGKSTLl~~i~g-l~~p~~G 56 (241)
T cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG-LVEPTSG 56 (241)
T ss_pred CCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCE
T ss_conf 79889978388999998999999998339999999974-9999855
No 224
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.013 Score=35.96 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=27.5
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 57021541003675666624899999998850578852
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
+.+.+|+..+|+|++|+|||||+..+.. ..+-..+-+
T Consensus 32 l~i~~Ge~~~liG~NGaGKSTLl~~l~g-l~~p~~G~I 68 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGR-HQPPSEGEI 68 (265)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEE
T ss_conf 8987998999999999809999999956-889987389
No 225
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.011 Score=36.46 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 231100235-570215410036756666248999999988
Q gi|254780615|r 135 TGIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 135 TGIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
.+.+|+|.+ +.+.+|+..+|.|+.|+|||||+..+..-.
T Consensus 15 g~~~aL~~is~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll 54 (277)
T PRK13652 15 GSKEALNNINFIAGRKQRIAVIGPNGAGKSTLFKHFNGIL 54 (277)
T ss_pred CCCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9987986728799899899999999947999999996699
No 226
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.74 E-value=0.031 Score=33.52 Aligned_cols=48 Identities=27% Similarity=0.522 Sum_probs=36.9
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 11002-35570215410036756666248999999988505788526876
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
++|+| .=+.+-+|...||+|-||+||||+...+++- .+-..+-+.|-+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~pt~G~i~f~g 74 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EEPTSGEILFEG 74 (268)
T ss_pred EEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHCC-CCCCCCEEEECC
T ss_conf 4875115689758987899936888778799999728-388872699868
No 227
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.73 E-value=0.017 Score=35.29 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|..+.|+|+||+|||||+..+..
T Consensus 18 ~vsl~i~~Ge~~~ivGpSGsGKSTLL~~i~g 48 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7075988998999999998449999999981
No 228
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.73 E-value=0.014 Score=35.81 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 110023-55702154100367566662489999999885057885
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v 180 (478)
+.|+|- =+.+-+|...||+|+.|.|||||+..+.--..-..+.+
T Consensus 37 f~AL~dVsf~i~~GEivgllG~NGaGKSTLlk~I~Gl~~P~~G~I 81 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 999527078885998999998998619999999967988887479
No 229
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.098 Score=30.24 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHC--CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
Q ss_conf 2376558878752301678753001100--23454441000013420002311002355702154100367566662489
Q gi|254780615|r 88 EATLGRIMNVIGEPVDDQGAIISSEKRA--IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVL 165 (478)
Q Consensus 88 ~~lLGRViD~lG~PLDg~g~i~~~~~~p--i~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l 165 (478)
++---||.-.-++|.-.++........- |...+..+.+-.+.+.| -.||.++ .+|-.+.|.|++|+|||+|
T Consensus 33 pa~pd~v~q~~~QP~sr~s~~~~~t~~f~~v~a~~~~~~eWdrs~~P-----~lId~~f--r~g~~~~~~gdsg~GKttl 105 (402)
T COG3598 33 PAAPDRVLQQAAQPHSRKSALVTITQSFIQVQAEAMRLSEWDRSNSP-----QLIDEFF--RKGYVSILYGDSGVGKTTL 105 (402)
T ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHEEEEHHHHCCHHHCCCCCCH-----HHHHHHH--HCCEEEEEECCCCCCHHHH
T ss_conf 86346899985598420024555013106720411576551731175-----6635776--5170589844886237689
Q ss_pred HHHHHHHHH
Q ss_conf 999999885
Q gi|254780615|r 166 IMELINNVA 174 (478)
Q Consensus 166 ~~~~i~n~~ 174 (478)
+..+.+..+
T Consensus 106 lL~l~Iala 114 (402)
T COG3598 106 LLYLCIALA 114 (402)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 230
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.72 E-value=0.017 Score=35.20 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=27.2
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 1100-2355702154100367566662489999999
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
..++ |.=+.+-+|.-..|+|+||+|||||+..++-
T Consensus 13 ~~~l~~isl~v~~Ge~~~i~GpSG~GKSTlLr~iaG 48 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999876177986998999999998809999999976
No 231
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.015 Score=35.70 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 235570215410036756666248999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
|.=+.+-+|..++|+|++|+|||||+..+.
T Consensus 20 dvsl~i~~Ge~~~iiG~nGaGKSTLl~~l~ 49 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 207788799899999999971999999996
No 232
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.69 E-value=0.017 Score=35.23 Aligned_cols=35 Identities=20% Similarity=0.481 Sum_probs=27.9
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 11002-355702154100367566662489999999
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.++++ .=+.+-+|+-.+|+|++|+|||||+..+..
T Consensus 20 ~~vL~~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G 55 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred EEEEECCEEEEECCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 899889778991880999998999609999999967
No 233
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.68 E-value=0.016 Score=35.48 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=27.9
Q ss_pred CCCCCCCCC------CCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 311002355------70215410036756666248999999988
Q gi|254780615|r 136 GIKVIDLIS------PYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 136 GIkaID~l~------pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
+-|++|.+. ++-+|..++|+|+.|+|||||+..+..-.
T Consensus 6 ~~k~l~~~sL~i~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll 49 (246)
T cd03237 6 MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEECCEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 81761506898568846579899999799976999999997787
No 234
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=94.64 E-value=0.018 Score=35.13 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=28.5
Q ss_pred CCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 31100235-5702154100367566662489999999
Q gi|254780615|r 136 GIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+..++|.+ +.+.+|.-.+|.|++|+|||||+.+++.
T Consensus 29 ~~~aL~~vsl~I~~GE~~~llGpSGsGKSTLlr~iaG 65 (378)
T PRK09452 29 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG 65 (378)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999936277999998999998999769999999976
No 235
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.64 E-value=0.014 Score=35.76 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHC
Q ss_conf 1899999887743
Q gi|254780615|r 465 VGSIDEAVKKAEV 477 (478)
Q Consensus 465 ~g~i~e~~~k~~~ 477 (478)
.|+-||..+|.++
T Consensus 680 ~G~h~eLl~~l~~ 692 (694)
T TIGR03375 680 DGPKDQVLEALRK 692 (694)
T ss_pred ECCHHHHHHHHHC
T ss_conf 8888999962457
No 236
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.63 E-value=0.014 Score=35.73 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCC--CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 023--110023557021541003675666624899999998
Q gi|254780615|r 134 TTG--IKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 134 ~TG--IkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.|| +-+=|.=+.+-+|.-..|+|+||+|||||+.++..-
T Consensus 33 ~tg~~vAV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred HHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 33999989651748879989999999973499999999759
No 237
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.62 E-value=0.017 Score=35.25 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2355702154100367566662489999999885057885268
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
|.=+.+-+|+-.+|.|+.|+|||||+..++--. +-+.+-+.|
T Consensus 19 ~is~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~-~p~~G~I~~ 60 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILF 60 (200)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEE
T ss_conf 227898799799998899987999999997785-889856999
No 238
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.62 E-value=0.016 Score=35.50 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.=+.+-+|++++|.|.+|+|||||+.-+..-
T Consensus 21 is~~i~~G~~vaivG~sGsGKSTll~ll~gl 51 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 0899879999999999998599999999677
No 239
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.61 E-value=0.013 Score=35.99 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=27.1
Q ss_pred CCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 10023-55702154100367566662489999999
Q gi|254780615|r 138 KVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 138 kaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+|++. =+.+-+|+.++|+|++|+|||||+..+..
T Consensus 8 ~AL~~Vsl~i~~Ge~vaiiG~sGsGKSTLl~~l~G 42 (276)
T PRK13634 8 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG 42 (276)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 66514477998998999999999699999999974
No 240
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=94.60 E-value=0.02 Score=34.76 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 5570215410036756666248999999988
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
=+.|-++|=..|+|||||||||++--+ +.+
T Consensus 21 ~~~I~~n~vTAlIGPSGCGKSTlLR~l-NRM 50 (248)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSL-NRM 50 (248)
T ss_pred CCEECCCEEEEEECCCCCCHHHHHHHH-HHH
T ss_conf 620037705898778898678999998-877
No 241
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.60 E-value=0.018 Score=35.11 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=28.2
Q ss_pred CCCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 31100-2355702154100367566662489999999
Q gi|254780615|r 136 GIKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+..++ |.=+.+-+|.-++|+|++|+|||||+.++..
T Consensus 15 ~~~al~~vsl~i~~Ge~~~llGpsG~GKSTllr~i~G 51 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999864388987998999999997369999999977
No 242
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=94.60 E-value=0.054 Score=31.94 Aligned_cols=180 Identities=23% Similarity=0.359 Sum_probs=93.1
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 1003675666624899999998850578852687-621643459999998542442001222344433231699971766
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMN 229 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~ 229 (478)
-+++|||+|.|||||+.=+++-+. ..+-|-. ..=||..-
T Consensus 32 H~LL~GPPGLGKTTLA~IiA~Emg---~~l~iTsGP~L~kPgD------------------------------------- 71 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALEKPGD------------------------------------- 71 (305)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CCCEEEECCCCCCHHH-------------------------------------
T ss_conf 166317568746789999999838---9326740675547578-------------------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH----------HHHCCCCHHHHCCHHHHHHHHHHHH
Q ss_conf 896787777777877689998669967999715599987601245----------5311441011012235666578887
Q gi|254780615|r 230 EPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEIS----------ALLGRIPSAVGYQSTLALEMGELQE 299 (478)
Q Consensus 230 ~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEis----------l~~g~~P~~~gYp~~~f~~~~~l~E 299 (478)
+.+..|++ +-+|||++ |=|-|.+.+-=|+= -..|+=|+++ ++-=++|.+
T Consensus 72 ------laaiLt~L--------~~gDVLFI-DEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar----~v~ldLpPF-- 130 (305)
T TIGR00635 72 ------LAAILTNL--------EEGDVLFI-DEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSAR----SVRLDLPPF-- 130 (305)
T ss_pred ------HHHHHHHC--------CCCCEEEC-CHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCC----EEEECCCCC--
T ss_conf ------99999705--------68963101-2565048334531053001217877871289852----576068694--
Q ss_pred HHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHC-CCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHH
Q ss_conf 63177765325666543047664410589999750-34256411566318867532235543111620128999999999
Q gi|254780615|r 300 RITTTLKGSITSVQAIYVPADDLTDPAPATSFTHL-DATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARR 378 (478)
Q Consensus 300 Rag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~-Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~ 378 (478)
|-+. ..|-.|-+|.|--|= |+++ .=..|=..+|+ .+..=.++.|+-.+-.++-.++|++
T Consensus 131 ----------TLvG-ATTR~G~lt~PLrdR-FG~~~rl~fY~~~EL~--------~Iv~R~A~~L~~ei~~~~a~~IArr 190 (305)
T TIGR00635 131 ----------TLVG-ATTRAGMLTSPLRDR-FGIILRLEFYTPEELA--------EIVSRSAGLLNIEIEQEAALEIARR 190 (305)
T ss_pred ----------CCCC-CCCCCCCCCCCHHHH-HHHHHHCCCCCHHHHH--------HHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf ----------4200-003477410313345-4474540268987899--------9987533441430077899999875
Q ss_pred HHHH----HHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q ss_conf 9999----9989989999997365569988-9999999
Q gi|254780615|r 379 VQEI----LQRYKSLQDIIAILGMDELSEE-DKLVVAR 411 (478)
Q Consensus 379 ~r~~----l~~y~el~~~i~~~g~~~l~~~-~~~~i~r 411 (478)
-|-+ ..-.|..+|+.++-+...-+.. .+.+++.
T Consensus 191 SRGTPRIAnRLLRRVRDfA~V~~~~~I~~~i~~~AL~~ 228 (305)
T TIGR00635 191 SRGTPRIANRLLRRVRDFAQVRGQGVITRDIALKALEM 228 (305)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 47863788877676644888726787388999999886
No 243
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.60 E-value=0.025 Score=34.16 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=29.7
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 35570215410036756666248999999988505788526
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V 182 (478)
.=+.+-+|++++|.|++|+|||||+.-+.+-....++.+.|
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 22775489878885588885789999998615888836989
No 244
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.58 E-value=0.017 Score=35.29 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 5702154100367566662489999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+.+.+|...+|+|++|+|||||+..+..
T Consensus 22 l~i~~Ge~~aliG~sGsGKSTLl~~l~g 49 (248)
T PRK11264 22 LEVKPGEVVAIIGPSGSGKTTLLRCINL 49 (248)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7987998999999999809999999975
No 245
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.58 E-value=0.018 Score=35.16 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2355702154100367566662489999999885057885268
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
|.=+.+.+|...+|+|++|+|||||+..+.. ..+-..+-..+
T Consensus 19 dvs~~i~~Ge~~~liG~nGsGKSTll~~i~G-l~~~~~G~i~~ 60 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINK-LEEITSGDLIV 60 (240)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEE
T ss_conf 3078987998999999999809999999963-89999974878
No 246
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.58 E-value=0.35 Score=26.65 Aligned_cols=151 Identities=24% Similarity=0.296 Sum_probs=75.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003675666624899999998850578-----852687621643459999998542442001222344433231699971
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~-----~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
..++|.+|||||.++-.++..++..+. +..||. ++-..++++
T Consensus 210 piLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~---------------------------------Ldl~~LiAG 256 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS---------------------------------LDIGSLLAG 256 (758)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEE---------------------------------EEHHHHHCC
T ss_conf 60216999869999999999997389976558988998---------------------------------458778616
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHH----
Q ss_conf 7668967-87777777877689998669967999715599987601245531144101101223566657888763----
Q gi|254780615|r 227 QMNEPPG-ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI---- 301 (478)
Q Consensus 227 ~~~~~~~-~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERa---- 301 (478)
+...--. .|++...-. . .+.+++.||+|.+-...-|+. ..|-..+..-.+...+.|-
T Consensus 257 tkyRGefEeRlk~vi~e------~-~~~~~~ILFIDEiH~ivGaG~-----------~~gg~~DaaNlLKP~LarG~l~~ 318 (758)
T PRK11034 257 TKYRGDFEKRFKALLKQ------L-EQDTNSILFIDEIHTIIGAGA-----------ASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_pred CCCCHHHHHHHHHHHHH------H-HHCCCEEEEEECHHHHCCCCC-----------CCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 86415499999999999------9-857985999804344226887-----------67776467887457874697239
Q ss_pred -CCC----------CCCCEE-EEEEEEECCCCCCCHHHHHHHHHCCCEE--------------------EEEHHHHHCCC
Q ss_conf -177----------765325-6665430476644105899997503425--------------------64115663188
Q gi|254780615|r 302 -TTT----------LKGSIT-SVQAIYVPADDLTDPAPATSFTHLDATT--------------------VLSRQISEKGI 349 (478)
Q Consensus 302 -g~~----------~~GSIT-~~~tV~~~~dD~~dpi~~~~~si~Dg~i--------------------vLsr~la~~g~ 349 (478)
|.+ ++..++ -|+.| ++.+|-.+.++.||.|.. -||......+.
T Consensus 319 IgaTT~~EYrk~iekD~AL~RRFq~V-----~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~ 393 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKI-----DITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_pred EEECCHHHHHHCCCCCHHHHHCCCEE-----ECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCC
T ss_conf 99437799875032147888428265-----3189998999999998999873236957743899999999976502688
Q ss_pred CC--CCCCCCC
Q ss_conf 67--5322355
Q gi|254780615|r 350 YP--AIDPLDS 358 (478)
Q Consensus 350 ~P--AId~~~S 358 (478)
.| |||++..
T Consensus 394 lPDKAIdllDe 404 (758)
T PRK11034 394 LPDKAIDVIDE 404 (758)
T ss_pred CCHHHHHHHHH
T ss_conf 96199999999
No 247
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.02 Score=34.82 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=31.4
Q ss_pred CCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 100-235570215410036756666248999999988505788526876
Q gi|254780615|r 138 KVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 138 kaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
.++ |.=+.+-+|..++|.|.+|+|||||+..+.. .-+-+.+-+.+-+
T Consensus 16 ~aL~~vsl~i~~Ge~vaiiG~nGsGKSTL~~~l~G-ll~P~~G~I~v~G 63 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSG 63 (274)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEECC
T ss_conf 46631177984899999999999809999999970-6858887299999
No 248
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=94.56 E-value=0.017 Score=35.19 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=30.7
Q ss_pred CCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 1002-3557021541003675666624899999998850578852
Q gi|254780615|r 138 KVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 138 kaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
++++ .=+.+-+|+-.+|+|+.|+|||||+..+..-.....+.+.
T Consensus 17 ~~l~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~Gl~~~~~G~I~ 61 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61 (241)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 999520789839979999889998699999999678888876277
No 249
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.019 Score=34.95 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=25.3
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 355702154100367566662489999999
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.=+.+-+|..++|+|++|+|||||+..+..
T Consensus 27 vsl~I~~Ge~vaiiG~nGsGKSTL~~~l~G 56 (283)
T PRK13640 27 VSFSIPRGSWTALIGHNGSGKSTISKLING 56 (283)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 186998999999999999879999999964
No 250
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.56 E-value=0.02 Score=34.79 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=8.7
Q ss_pred HHCCCHHHHHHHHH
Q ss_conf 64189999988774
Q gi|254780615|r 463 YMVGSIDEAVKKAE 476 (478)
Q Consensus 463 ~~~g~i~e~~~k~~ 476 (478)
.|-|+.+|..++-+
T Consensus 523 ~~~g~y~~y~~~~~ 536 (556)
T PRK11819 523 WFEGNFQEYEEDKK 536 (556)
T ss_pred EECCCHHHHHHHHH
T ss_conf 90689999999999
No 251
>PRK13542 consensus
Probab=94.55 E-value=0.016 Score=35.42 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 3110023-5570215410036756666248999999988
Q gi|254780615|r 136 GIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 136 GIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|-++++. =+.+.+|+.++|.|+.|+|||||+.-+..-.
T Consensus 30 ~~~il~~isl~i~~Gei~~liGpNGaGKTTLlk~l~Gll 68 (224)
T PRK13542 30 GRAVFRGIDISLAPGDLLQVMGPNGSGKTSLLRVLSGLM 68 (224)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 999884616787599799999999999999999995797
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.55 E-value=0.077 Score=30.95 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCCCCCCC-EECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 00023110023557021541-00367566662489999999885
Q gi|254780615|r 132 ILTTGIKVIDLISPYQKGGK-IGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 132 ~L~TGIkaID~l~pig~Gqr-~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
.|.+-..-++.|- .|.. ..+.|++|+|||.|+.-|++...
T Consensus 81 al~~a~~y~enf~---~~~~gLlF~G~~GTGKThLA~aIan~Li 121 (242)
T PRK07952 81 ALSKARQYVEEFD---GNIASFIFSGKPGTGKNHLAAAICNELL 121 (242)
T ss_pred HHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9999999998654---3887179978999978999999999999
No 253
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=94.55 E-value=0.019 Score=34.89 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=15.3
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 367566662489999999
Q gi|254780615|r 154 LFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 154 Ifgg~GvGKT~l~~~~i~ 171 (478)
|.|+||+|||||+..++-
T Consensus 1 LLGpSGcGKTTlLrlLAG 18 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG 18 (331)
T ss_pred CCCCCCCCHHHHHHHHHC
T ss_conf 978888747999999834
No 254
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.018 Score=35.04 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=32.3
Q ss_pred HHHCCCCCCCCCCCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 000013420002311002-355702154100367566662489999999
Q gi|254780615|r 124 TEQSTDASILTTGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 124 ~~R~~i~e~L~TGIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
++-+-++..+. |..|+| .=+.+.+|.-.+|+|++|+|||||+.++..
T Consensus 20 iev~nlsk~y~-~~~al~~vsl~I~~GE~~~llGpsGsGKSTllr~i~G 67 (377)
T PRK11607 20 LEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred EEEEEEEEEEC-CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99985899999-9999905187999998999999998489999999976
No 255
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=94.54 E-value=0.017 Score=35.18 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 23454441000013420002311002355702154100367566662489999999
Q gi|254780615|r 116 IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 116 i~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.-...++-.++--.+.|. |.=+-|-.|+=+||.|+||+|||||.. ++.
T Consensus 464 i~F~nirFRY~pD~PeVL~------nl~L~I~~Ge~IGIvGpSGSGKSTLTK-L~Q 512 (703)
T TIGR01846 464 ITFENIRFRYKPDSPEVLS------NLSLDIKPGEVIGIVGPSGSGKSTLTK-LLQ 512 (703)
T ss_pred EEEEEEEECCCCCCCHHHH------CCCCCCCCCEEEEEECCCCCCHHHHHH-HHH
T ss_conf 6787533146888717873------268765786579987278986789999-988
No 256
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.52 E-value=0.074 Score=31.06 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0215410036756666248999999988505788526876216
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE 188 (478)
+.+|+=.-|.|++|+|||+++.+++.|.+..+ +..|....-|
T Consensus 10 ~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~-g~~V~~~SlE 51 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLE 51 (242)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 99981899996899999999999999999977-9959999333
No 257
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.51 E-value=0.02 Score=34.81 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.1
Q ss_pred CCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 10023-55702154100367566662489999999
Q gi|254780615|r 138 KVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 138 kaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+++|- =+.+-+|.-.+|+|++|+|||||+..++.
T Consensus 16 ~al~~vsl~i~~GE~~~llGpSGsGKSTLlr~iaG 50 (352)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50 (352)
T ss_pred EEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99906376999998999999998469999999976
No 258
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.51 E-value=0.024 Score=34.21 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=22.0
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2154100367566662489999999
Q gi|254780615|r 147 QKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 147 g~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
-+|+-.+|+|++|+|||||+..+.-
T Consensus 24 k~GEi~gLiGpNGaGKSTLlk~i~G 48 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 8980999989999709999999967
No 259
>KOG4658 consensus
Probab=94.50 E-value=0.22 Score=27.98 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1002355702154100367566662489999999885--05788526876216434599999985424420012223444
Q gi|254780615|r 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGS 215 (478)
Q Consensus 138 kaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~--~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~ 215 (478)
++.+.|...+- |-++|+|=.|+|||||+.++-+... +.+=|+.+.+-+.+ .-.+.+++.++.+.-.. ...
T Consensus 169 kl~~~L~~d~~-~ivgi~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk-~f~~~~iq~~Il~~l~~------~~~ 240 (889)
T KOG4658 169 KLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK-EFTTRKIQQTILERLGL------LDE 240 (889)
T ss_pred HHHHHHCCCCC-CEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCEEEEEEECC-CCCHHHHHHHHHHHHCC------CCC
T ss_conf 99998404799-68999889703499999998413312235787499999776-31088899999998446------871
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 33231699971766896787777777877689998669967999715599
Q gi|254780615|r 216 AVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFR 265 (478)
Q Consensus 216 ~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr 265 (478)
.-..++. .-.+.-+-.++ +++.-|+++||+-.
T Consensus 241 ~~~~~~~----------------~~~~~~i~~~L--~~krfllvLDDIW~ 272 (889)
T KOG4658 241 EWEDKEE----------------DELASKLLNLL--EGKRFLLVLDDIWE 272 (889)
T ss_pred CCCCCCH----------------HHHHHHHHHHH--CCCCEEEEEECCCC
T ss_conf 0001028----------------89999999985--56855999825675
No 260
>PRK07773 replicative DNA helicase; Validated
Probab=94.48 E-value=0.043 Score=32.64 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf 00023110023557-021541003675666624899999998850578-8526876
Q gi|254780615|r 132 ILTTGIKVIDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVFAG 185 (478)
Q Consensus 132 ~L~TGIkaID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~-~v~V~~~ 185 (478)
=+.||.+-+|.++- +-+|+=+-|=|.+++|||++++.++.|++..+. -+++|-+
T Consensus 185 GvpTG~~~ld~~~~g~~~~~l~i~a~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSL 240 (868)
T PRK07773 185 GVPTGFYDLDEMTNGLHPGQMIIVAARPGVGKSTLGLDFARSCSIRHRLASVIFSL 240 (868)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 86889799987631888776799982897777789999999999865996589730
No 261
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.48 E-value=0.019 Score=34.98 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=29.4
Q ss_pred CCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3110023-557021541003675666624899999998
Q gi|254780615|r 136 GIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 136 GIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.++|+|. =+.+.+|+.++|+|+.|+|||||+..+.--
T Consensus 34 ~~~AL~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl 71 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 96987670789838989999979998199999999758
No 262
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.02 Score=34.73 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=28.6
Q ss_pred CCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 311002-355702154100367566662489999999
Q gi|254780615|r 136 GIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+.+++| .=+.+-+|.-++|+|++|+|||||+..+..
T Consensus 14 ~~~~l~~is~~v~~Ge~~~iiGpSGsGKSTll~~i~G 50 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9899866386988998999999999779999999976
No 263
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.018 Score=35.16 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=25.8
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 557021541003675666624899999998
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=+.+.+|+-.+|.|+.|+|||||+..+..-
T Consensus 22 sl~i~~Gei~~liGpNGaGKSTLlk~i~Gl 51 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889989979999999998199999999759
No 264
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.43 E-value=0.017 Score=35.19 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.=+.+-.|+.++|.|+.|+|||||+..++--
T Consensus 30 isf~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl 60 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 3889818989999999998799999999769
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.43 E-value=0.023 Score=34.43 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+.+|+..+|+|+.|+|||||+..+..-
T Consensus 22 ~vs~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl 53 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 30789879979999989998899999999668
No 266
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.022 Score=34.51 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+-+|..++|+|++|+|||||+..+.-
T Consensus 27 ~vs~~i~~GE~v~iiG~sGsGKSTLl~~i~G 57 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 6289988998999999999409999999966
No 267
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.38 E-value=0.15 Score=29.00 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.3
Q ss_pred CEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 10036756666248999999988
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|+.+.|++|||||+|+..++.|.
T Consensus 2 KIlllGDsgVGKTSL~~~~~~~~ 24 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ 24 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989999999998398
No 268
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.019 Score=34.89 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 31100-23557021541003675666624899999998850578852
Q gi|254780615|r 136 GIKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 136 GIkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
+.+|+ |.=+.+-+|..++|+|++|+|||||+..+.--..-..+.+.
T Consensus 18 ~~~aL~dIsl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~ 64 (288)
T PRK13643 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 27336633679859989999999994799999999748888885699
No 269
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.34 E-value=0.018 Score=35.17 Aligned_cols=36 Identities=31% Similarity=0.566 Sum_probs=28.5
Q ss_pred CCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 31100235-5702154100367566662489999999
Q gi|254780615|r 136 GIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.+|+|.+ +.+-+|...+|.|+.|+|||||+..+..
T Consensus 17 g~~aL~~vs~~i~~Ge~~aiiG~NGsGKSTLl~~l~G 53 (273)
T PRK13647 17 GTKALDGVSLVIPEGSKTAILGPNGAGKSTLLLHLNG 53 (273)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8889881178988998999999999759999999966
No 270
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.34 Score=26.71 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 410036756666248999999988
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
.|+.|+|++|+||||++..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 979998999998899999999976
No 271
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.28 E-value=0.023 Score=34.35 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 2355702154100367566662489999999885057885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v 180 (478)
|.=+.+.+|..++|.|++|+|||||+..+..- -+...+-
T Consensus 30 dIs~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl-~~p~~G~ 68 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-ETPTAGD 68 (257)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCCE
T ss_conf 40758879989999989988899999999658-9888870
No 272
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.024 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.6
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 5570215410036756666248999999
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
=+.+ +|.-++|+|+||+|||||+..++
T Consensus 18 ~f~i-~ge~~~iiGpSGsGKSTll~~i~ 44 (214)
T cd03297 18 DFDL-NEEVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred EEEC-CCCEEEEECCCCCHHHHHHHHHH
T ss_conf 9862-99799999999735999999998
No 273
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=94.27 E-value=0.057 Score=31.82 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=27.4
Q ss_pred CCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23557-021541003675666624899999998850
Q gi|254780615|r 141 DLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 141 D~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
+.++| .|+..|+||-|.+|+|||+|...++....+
T Consensus 20 ~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~ 55 (267)
T pfam03308 20 RRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELRR 55 (267)
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 998743599559987689988799999999999996
No 274
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.27 E-value=0.1 Score=30.08 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=28.6
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 1541003675666624899999998850578852687621643
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~ 190 (478)
.++-+-|+|++|+|||.|++-+++... ..+..++|.-..++.
T Consensus 44 ~~~~l~l~G~~G~GKTHLLqA~~~~~~-~~~~~~~yl~~~~~~ 85 (235)
T PRK08084 44 HSGYIYLWGREGAGRSHLLHAACAELS-QRGDAVGYVPLDKRA 85 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEEHHHHH
T ss_conf 987699989999888999999999997-079857998779866
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.26 E-value=0.021 Score=34.70 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=26.5
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 35570215410036756666248999999988
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
.=+.+-+|+..+|.|++|+|||||+..+....
T Consensus 18 is~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~ 49 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 37788699799999899988999999995798
No 276
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.24 E-value=0.026 Score=34.00 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|+.++|.|+.|+|||||+..++-
T Consensus 19 ~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G 49 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 5177987998999999999859999999976
No 277
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.023 Score=34.40 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=26.8
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 11002-35570215410036756666248999999
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
++|+| .=+.+-+|...+|+|.||+|||||+..+.
T Consensus 18 ~~al~~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~ 52 (233)
T cd03258 18 VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99984828899999999998898058999999996
No 278
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=94.22 E-value=0.14 Score=29.25 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.5
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 003675666624899999998
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n 172 (478)
+++.|++|+|||+++..++..
T Consensus 1 iLl~GppGtGKT~~a~~la~~ 21 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKE 21 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHH
T ss_conf 987899999999999999999
No 279
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=94.21 E-value=0.031 Score=33.54 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=37.3
Q ss_pred CCCCCCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0002311002-3557021541003675666624899999998850578852687
Q gi|254780615|r 132 ILTTGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 132 ~L~TGIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
...+|+.|++ .=+.|-||+=.=+.|+||.||||||..+...-.=..+.|.|++
T Consensus 10 ~Y~~~~~aL~~v~l~i~kG~F~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~G 63 (215)
T TIGR02673 10 SYPGGVEALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRVAG 63 (215)
T ss_pred ECCCCCHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 078985113276447527740788727786178999999852698758088887
No 280
>PRK12377 putative replication protein; Provisional
Probab=94.20 E-value=0.33 Score=26.81 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0002311002355702154100367566662489999999885
Q gi|254780615|r 132 ILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 132 ~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
.|.+...-.+.|.. .+.-+-+.|++|||||.|+.-+.+...
T Consensus 86 a~~~a~~~~~~F~~--~~~NlIf~G~pGtGKTHLA~AIg~~a~ 126 (248)
T PRK12377 86 ALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999999998731--886089989999878899999999999
No 281
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.17 E-value=0.028 Score=33.81 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 23557021541003675666624899999998850578852
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
|.=+.+.+|+.++|.|+.|+|||||+..+. +..+...+-+
T Consensus 18 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~p~sG~i 57 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILA-GLSPPLAGRV 57 (201)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCEEE
T ss_conf 307888799599999999999999999996-6778885299
No 282
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.03 Score=33.65 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=31.5
Q ss_pred CCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 100-235570215410036756666248999999988505788526
Q gi|254780615|r 138 KVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182 (478)
Q Consensus 138 kaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V 182 (478)
+|+ |.=+.+.+|+-.||+|+.|.|||||+..++--..-..+.+.|
T Consensus 14 ~al~~vs~~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i 59 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9975426788799599999899984999999996002668998999
No 283
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.16 E-value=0.42 Score=26.09 Aligned_cols=90 Identities=21% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 15410036756666248999999988505788526876216434599999985424420012223444332316999717
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ 227 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~ 227 (478)
+|.-+-|.|-||.|||||+..+.....+. ...++.+=|..=| +.+. .+.
T Consensus 23 kg~viWlTGLSGSGKTTlA~~L~~~L~~~--~~~~~~LDGD~lR---~~l~----~dl---------------------- 71 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHEL--GVHTYLLDGDNVR---HGLC----SDL---------------------- 71 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECHHHHH---HHHC----CCC----------------------
T ss_conf 98699987999998899999999999975--9975997779998---7436----678----------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 668967877777778776899986699679997155999876
Q gi|254780615|r 228 MNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269 (478)
Q Consensus 228 ~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A 269 (478)
.=+.-.|...+....-+|..+.+||..|++-+=|.++..+.
T Consensus 72 -gfs~~dR~~n~~r~~~lak~l~~~G~iVIvs~Isp~~~~R~ 112 (198)
T PRK03846 72 -GFSDADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQ 112 (198)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf -98999999999999999999985898366414788799999
No 284
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.15 E-value=0.021 Score=34.63 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=28.4
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1100-23557021541003675666624899999998
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.+++ |.=+.+-+|+-.+|+|+.|.|||||+..+..-
T Consensus 13 ~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl 49 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9998140899889989999999998599999999779
No 285
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.15 E-value=0.027 Score=33.90 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.9
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 5702154100367566662489999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+.+-+|+..+|+|++|+|||||+..+..
T Consensus 22 l~i~~Gei~~iiG~nGaGKSTLl~~i~G 49 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 8984997999999999999999999837
No 286
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.14 E-value=0.027 Score=33.97 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 235570215410036756666248999999988505788526
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V 182 (478)
|.=+.+-+|+-.+|+|+.|.|||||+..+.--.....+.+.+
T Consensus 20 ~is~~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i 61 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 408898499599999899973999999996698788997799
No 287
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.021 Score=34.59 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=28.4
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 11002-3557021541003675666624899999998
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.++++ .=+.+-+|+.++|+|+.|.|||||+..+..-
T Consensus 18 ~~~L~~isl~i~~Gei~~liG~NGaGKSTLl~~i~G~ 54 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888112789869979999879997599999999679
No 288
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.11 E-value=0.029 Score=33.72 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 35570215410036756666248999999
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
.=+.+-.|.-+-|+|+|||||||++-+|+
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 26897479799998999888899999996
No 289
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.10 E-value=0.028 Score=33.83 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=36.5
Q ss_pred CCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 1100235-57021541003675666624899999998850578852687621643
Q gi|254780615|r 137 IKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190 (478)
Q Consensus 137 IkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~ 190 (478)
++|+|.. +.+-+|..++|+|++|+|||||+..+.. .-+-..+.+.+.+.+++.
T Consensus 20 ~~AL~dvsl~I~~GE~v~IiG~nGsGKSTL~k~l~G-ll~P~~G~V~~~g~d~~~ 73 (304)
T PRK13651 20 LKALDGVSTEINQGEFIAIIGQTGSGKTTFIEHLNA-LLLPDTGTIEWIYFDEKN 73 (304)
T ss_pred CEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEECCCCCC
T ss_conf 468634057985998999987999859999999966-999887169994245434
No 290
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=94.10 E-value=0.047 Score=32.33 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCHHHCCCCC-CCCCCCCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 016787530011002345444100001342-000231100-235570215410036756666248999999988505788
Q gi|254780615|r 102 VDDQGAIISSEKRAIHQPSPSYTEQSTDAS-ILTTGIKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179 (478)
Q Consensus 102 LDg~g~i~~~~~~pi~~~~p~~~~R~~i~e-~L~TGIkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~ 179 (478)
||++ -+..++.||-.+. |.-+-.+- -=+-|-.++ |.=+++--|||+|+.|--|.|||||+.-+.|= ...++.
T Consensus 1242 I~N~-H~~~dd~WP~~G~----M~V~~LT~KYT~~G~avL~dlSFsv~~GQ~VGlLGRTGsGKSTLLSAlLRL-~~T~GE 1315 (1534)
T TIGR01271 1242 IENK-HVKKDDIWPSGGQ----MDVKDLTAKYTEAGRAVLQDLSFSVEAGQRVGLLGRTGSGKSTLLSALLRL-LSTEGE 1315 (1534)
T ss_pred EECC-CCCCCCCCCCCCE----EEECCCEEEECCCCHHHHHHCCEEECCCCEEEEEECCCCCHHHHHHHHHHH-CCCCCC
T ss_conf 6077-6764677999885----675254023210205556413414438835775302687678999999996-077981
Q ss_pred CEEE
Q ss_conf 5268
Q gi|254780615|r 180 YSVF 183 (478)
Q Consensus 180 v~V~ 183 (478)
+.|=
T Consensus 1316 I~ID 1319 (1534)
T TIGR01271 1316 IQID 1319 (1534)
T ss_pred EEEC
T ss_conf 6762
No 291
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.019 Score=34.90 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 10023-557021541003675666624899999998
Q gi|254780615|r 138 KVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 138 kaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.++|. =+.+-+|+-.+|+|+.|+|||||+..+..-
T Consensus 21 ~~l~~isl~I~~Ge~~~iiGpNGaGKSTLlk~i~Gl 56 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 998402889859979999999883999999999749
No 292
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.08 E-value=0.027 Score=33.89 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=27.9
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 11002-3557021541003675666624899999998
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.+++| .=+.+.+|.-.+|+|+.|+|||||+..+..-
T Consensus 15 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLlk~i~Gl 51 (257)
T PRK13548 15 KTVLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (257)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9988033789869989999999998799999998567
No 293
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.05 E-value=0.029 Score=33.73 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.4
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 55702154100367566662489999999
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
=+.+.+|..++|+|++|+|||||+..+..
T Consensus 24 sl~i~~GE~~~iiGpNGaGKSTLlk~i~G 52 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSG 52 (262)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 78987998999998999609999999975
No 294
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.022 Score=34.53 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 235570215410036756666248999999988505788526
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V 182 (478)
|.=+.+.+|+.++|+|++|+|||||+..+.--..-.++.+.+
T Consensus 25 ~Vsl~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (280)
T PRK13649 25 DVNLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSV 66 (280)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 026898799899999599986999999996699988608999
No 295
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.02 E-value=0.034 Score=33.30 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 31100235-57021541003675666624899999998
Q gi|254780615|r 136 GIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 136 GIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.+++++.+ +.+-.|+++.|.|.||+||||++.-+-|-
T Consensus 397 d~~VL~~~sl~i~~G~t~AlVG~SGsGKSTii~LL~Rf 434 (1467)
T PTZ00265 397 DVEIYKDLNFTLKEGKTYAFVGESGCGKSTILKLIERL 434 (1467)
T ss_pred CCEECCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 88300683388638977998668887566799999632
No 296
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.01 E-value=0.028 Score=33.84 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=16.4
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 570215410036756666248999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+.+.+|++.+|+|.+|+|||||+.-+.
T Consensus 24 l~i~~Ge~~~LvG~NGaGKSTL~k~l~ 50 (490)
T PRK10938 24 LTLNAGDSWAFVGSNGSGKSALARALA 50 (490)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 899899899999799977999999995
No 297
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=94.01 E-value=0.042 Score=32.67 Aligned_cols=136 Identities=20% Similarity=0.383 Sum_probs=76.0
Q ss_pred CCCCCCCC-CC---CEECCCCCCCCHHHHHHHHHHHHHH---CCCCC-E--EEEEECCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 23557021-54---1003675666624899999998850---57885-2--68762164345999999854244200122
Q gi|254780615|r 141 DLISPYQK-GG---KIGLFGGAGVGKTVLIMELINNVAK---AHGGY-S--VFAGVGERTREGNDLYHEMIDSKVNIDPR 210 (478)
Q Consensus 141 D~l~pig~-Gq---r~gIfgg~GvGKT~l~~~~i~n~~~---~~~~v-~--V~~~iGER~rEv~e~~~e~~~~~~~~~~~ 210 (478)
..|-|+.+ |. .+.|.|..|||||....-+++..+. ..+.. + ||+=|-. -+.--..+.++
T Consensus 31 ~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~-~~T~y~~~~~L---------- 99 (383)
T TIGR02928 31 KALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQI-LDTSYQVLVEL---------- 99 (383)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC-CCCHHHHHHHH----------
T ss_conf 9988750674898725887888987889999999999998622699715899977854-68469999999----------
Q ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH------H-C-CCCEEEEEECHHHHHHHHHHHHHHHCCCCH
Q ss_conf 2344433231699971766896787777777877689998------6-6-996799971559998760124553114410
Q gi|254780615|r 211 KNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR------D-Q-GQDVLFFVDNIFRFTQANSEISALLGRIPS 282 (478)
Q Consensus 211 ~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfr------d-~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~ 282 (478)
+.+-| .+......|++|.+-.|||+ + + +.-|++++|.+=++.+--. .-|
T Consensus 100 --------------~~~ln-~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~-------d~P- 156 (383)
T TIGR02928 100 --------------ANQLN-RRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDD-------DDP- 156 (383)
T ss_pred --------------HHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCC-------CCH-
T ss_conf --------------99851-5778888988778789999999999832018879998623102215888-------880-
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 11012235666578887631777653256665
Q gi|254780615|r 283 AVGYQSTLALEMGELQERITTTLKGSITSVQA 314 (478)
Q Consensus 283 ~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~t 314 (478)
+|-- +.|.|+|..+ .++..+..|-.|.+
T Consensus 157 --AyS~-~LY~L~Ra~~-~~~~~~~~vgvIgI 184 (383)
T TIGR02928 157 --AYSK-LLYQLSRARE-NGDLENAKVGVIGI 184 (383)
T ss_pred --HHHH-HHHHHHHHHH-CCCCCCCCEEEEEE
T ss_conf --7878-8534331000-35778853489998
No 298
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.95 E-value=0.026 Score=34.02 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.8
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 35570215410036756666248999999
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
.=+.+.+|.-.+|+|++|+|||||+..+.
T Consensus 24 isl~i~~Gei~~iiG~sGsGKSTLl~~i~ 52 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCIN 52 (257)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 06688799799999899981999999996
No 299
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.93 E-value=0.023 Score=34.37 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.2
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 557021541003675666624899999998
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=+.+.+|+..+|.|+.|+|||||+..+...
T Consensus 20 s~~i~~ge~~~l~G~NGsGKTTl~~~l~G~ 49 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 899879999999989998499999998489
No 300
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.92 E-value=0.47 Score=25.77 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=56.5
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCH
Q ss_conf 03675666624899999998850578852687621643459999998542442001222344433231699971766896
Q gi|254780615|r 153 GLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPP 232 (478)
Q Consensus 153 gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~ 232 (478)
=+.|-||+|||||+..+.....+. ...++.+=|..-|+ .+. .+ -.=+.
T Consensus 3 W~tGLsgsGKTTlA~~l~~~L~~~--~~~~~~lDGD~iR~---~l~----~~-----------------------lgys~ 50 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQR--GRPVYVLDGDNVRH---GLN----KD-----------------------LGFSR 50 (149)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECCHHHHH---HHC----CC-----------------------CCCCH
T ss_conf 987999999999999999999986--99759977488997---736----55-----------------------59887
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 78777777787768999866996799971559998760
Q gi|254780615|r 233 GARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAN 270 (478)
Q Consensus 233 ~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~ 270 (478)
-.|...+.....+|.++.+||-.|++-.=+.++-.+..
T Consensus 51 ~~R~~n~~r~~~lak~l~~qg~~VIvs~isp~~~~R~~ 88 (149)
T cd02027 51 EDREENIRRIAEVAKLLADAGLIVIAAFISPYREDREA 88 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
T ss_conf 88999999999999999837982788416788999999
No 301
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=93.91 E-value=0.079 Score=30.88 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC--C
Q ss_conf 00023110023557--0215410036756666248999999988505788526876216434599999985424420--0
Q gi|254780615|r 132 ILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVN--I 207 (478)
Q Consensus 132 ~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~--~ 207 (478)
.|.||..=+|-.+= |.+|.=++|=|++|+|||||+.+.+...+++. .-..|+ -||=+ +..+- |.-..+. .
T Consensus 84 rf~s~~~ElDrVLGGGivpGsliLiGG~PG~GKSTLLLqV~~~LA~~~-~~~LYV-sGEES--~~Q~k--lRA~RLGit~ 157 (481)
T TIGR00416 84 RFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNS-MKVLYV-SGEES--LQQIK--LRATRLGITD 157 (481)
T ss_pred EEECCCCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEE-EECCH--HHHHH--HHHHHCCCCC
T ss_conf 053066410011067222441698468899635678999999984048-816899-72301--67788--8875455324
Q ss_pred CCCC---CCC--CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCH
Q ss_conf 1222---344--43323169997176689678777777787768999866996799971559998760124553114410
Q gi|254780615|r 208 DPRK---NNG--SAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPS 282 (478)
Q Consensus 208 ~~~~---~~~--~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~ 282 (478)
.... ..+ .-+.+-.--+.+-.|.+-..+.. ++-+--++++|||=.. ..-+|+.+
T Consensus 158 ~~~~sqaqdGinnlahdG~L~~L~Et~~e~I~~~~-------------e~~~P~~~ViDSIQ~l--y~~di~Sa------ 216 (481)
T TIGR00416 158 LVEPSQAQDGINNLAHDGNLYVLSETNLEQICAEI-------------EELNPQVVVIDSIQTL--YLPDISSA------ 216 (481)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-------------HHHCCCEEEEECCCCC--CCHHHCCC------
T ss_conf 78702344324543026753215757989999999-------------8529948999142100--00000258------
Q ss_pred HHHCCHHHHH--HHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 1101223566--65788876317776532566654
Q gi|254780615|r 283 AVGYQSTLAL--EMGELQERITTTLKGSITSVQAI 315 (478)
Q Consensus 283 ~~gYp~~~f~--~~~~l~ERag~~~~GSIT~~~tV 315 (478)
|+|+.- +...+|=|.+++++=+|-.+.-|
T Consensus 217 ----PGSVsQVRE~t~~Lmr~AKt~~iaifiVGHV 247 (481)
T TIGR00416 217 ----PGSVSQVRECTAELMRLAKTRGIAIFIVGHV 247 (481)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf ----8842388899999987652168657997004
No 302
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.87 E-value=0.022 Score=34.47 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=34.5
Q ss_pred CCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 31100235-57021541003675666624899999998850578852687
Q gi|254780615|r 136 GIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 136 GIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
+..|+|.+ +.+-+|.-.||+|+.|+||||++..+.--..-..+.+.|..
T Consensus 33 ~~~al~~vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G 82 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82 (236)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 98986680578848959999999983099999999649488715999999
No 303
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.84 E-value=0.073 Score=31.09 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=19.8
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 00367566662489999999885
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
+||-|+||+||||++..+.....
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89989897789999999999984
No 304
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.83 E-value=0.032 Score=33.44 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|+..+|+|++|+|||||+..++.
T Consensus 19 ~vsl~i~~Ge~~aliG~nGaGKSTLl~~i~G 49 (273)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKVLAG 49 (273)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 6088998998999999999769999999956
No 305
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=93.83 E-value=0.024 Score=34.26 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=23.3
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 557021541003675666624899999998
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=+.+-+|+..+|+|+.|+|||||+..+..-
T Consensus 22 sl~I~~GEi~gLIGPNGAGKSTLLk~I~Gl 51 (409)
T PRK09536 22 DLSVREGHLVGVVGPNGAGKTTLLRAMNGL 51 (409)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889889989999999872799999999668
No 306
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.82 E-value=0.037 Score=33.01 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf 55702154100367566662489999999885057885268762164345999999854244200122234443323169
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCS 222 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv 222 (478)
-+.+-+|-++.|.|+||+|||||+.+++.-.. .+.-..-.=||- .+
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~------------------------------vs- 68 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGED------------------------------VS- 68 (223)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCC---CCCCEEEECCCC------------------------------CC-
T ss_conf 36653885488767887668899999981369---988528874733------------------------------44-
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9971766896787777777877689
Q gi|254780615|r 223 LLYGQMNEPPGARSRVALTGLTVAE 247 (478)
Q Consensus 223 ~v~~~~~~~~~~r~~~~~~a~tiAE 247 (478)
.-.|+..|.++.|.+-+-|=
T Consensus 69 -----~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 69 -----TLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred -----CCCHHHHHHHHHHHHCCCCC
T ss_conf -----34859999999999728421
No 307
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.81 E-value=0.029 Score=33.75 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 3110023-55702154100367566662489999999885057885268
Q gi|254780615|r 136 GIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 136 GIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
.++|+|- =+.+.+|...+|+|.+|+|||||+..+.. .-+...+-+++
T Consensus 23 ~~~AL~~vsl~i~~Ge~~aIiG~nGsGKSTL~~~l~G-ll~p~~G~v~~ 70 (289)
T PRK13645 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG-LIISETGQTIV 70 (289)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEE
T ss_conf 3658653288988998999999999579999999965-98899985999
No 308
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.80 E-value=0.033 Score=33.40 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|+.++|+|+.|+|||||+..+..
T Consensus 15 ~isl~v~~Ge~v~iiGpNGaGKSTLlk~i~G 45 (245)
T PRK03695 15 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG 45 (245)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7489995998999997899419999999846
No 309
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.061 Score=31.59 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 110023557021541003675666624899999998850578852687621
Q gi|254780615|r 137 IKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 187 (478)
Q Consensus 137 IkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iG 187 (478)
...=|.-+++-+|+++.|.|.||+|||||+.-+. +..+.+.+-.-+-++-
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~-G~~~~~~G~I~vng~~ 384 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL-GFLAPTQGEIRVNGID 384 (559)
T ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCCC
T ss_conf 5566710675489679998899997899999984-7577778448889931
No 310
>PRK06921 hypothetical protein; Provisional
Probab=93.75 E-value=0.28 Score=27.21 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 200023110023557021--54100367566662489999999885057885268762164345999999854
Q gi|254780615|r 131 SILTTGIKVIDLISPYQK--GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 201 (478)
Q Consensus 131 e~L~TGIkaID~l~pig~--Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~ 201 (478)
+..++-+.-+.-|..+-. ..-++++|.+|+|||.|+.-|+++.-+....-++|.- ..+++.+++
T Consensus 96 ~a~~~a~eY~~~F~~i~~~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~-------~~~~~~~lk 161 (265)
T PRK06921 96 DAYECAVEYVKDFEKIQGCRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-------FVEGFGDLK 161 (265)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE-------HHHHHHHHH
T ss_conf 999999999997787607776627997289898899999999999996297199988-------799999999
No 311
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.72 E-value=0.036 Score=33.15 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.8
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 110023-55702154100367566662489999999
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.+++|. =+.+-+|+..+|.|++|+|||||+..++-
T Consensus 13 ~~vL~~vsl~v~~Gei~~iiGpnGaGKSTLl~~i~G 48 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 998855056887998999996899999999999707
No 312
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=93.72 E-value=0.047 Score=32.36 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=22.5
Q ss_pred HHHHHHHHH--HCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 760124553--114410110122356665788876317776532566
Q gi|254780615|r 268 QANSEISAL--LGRIPSAVGYQSTLALEMGELQERITTTLKGSITSV 312 (478)
Q Consensus 268 ~A~rEisl~--~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~ 312 (478)
.|-+.||+- -||.-+-.|=-++=-+.+++.+-+.-.-..|+|+-.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~ 351 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFD 351 (539)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 12301245763887899988999998999999948778888449992
No 313
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.031 Score=33.52 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+.+|+..+|.|++|+|||||+..+..-
T Consensus 17 ~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl 48 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 11789879979999878899989999999588
No 314
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.68 E-value=0.03 Score=33.61 Aligned_cols=49 Identities=27% Similarity=0.459 Sum_probs=32.9
Q ss_pred CCCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 23110023-557021541003675666624899999998850578852687
Q gi|254780615|r 135 TGIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 135 TGIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
.|.+|+|. =+.+-+|+..+|+|+.|+|||||+..+.- .-+-..+-+.|-
T Consensus 17 ~g~~aL~~isl~I~~Ge~~aiiG~NGaGKSTLl~~i~G-ll~p~~G~I~~~ 66 (285)
T PRK13636 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKPSSGRILFD 66 (285)
T ss_pred CCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEEC
T ss_conf 99888761378987998999999999809999999965-988886089999
No 315
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.68 E-value=0.039 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.296 Sum_probs=23.3
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 570215410036756666248999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+.+-+|+..+|.|++|+|||||+..+.
T Consensus 16 l~i~~G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 16 VDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 898899999998799986999999998
No 316
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=93.67 E-value=0.039 Score=32.90 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH--HHCCCCC
Q ss_conf 235570215410036756666248999999988--5057885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGY 180 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~--~~~~~~v 180 (478)
|.=+.|-+++++.|+|.||.|||||+.=+..=. |..|+.+
T Consensus 492 di~L~I~~n~k~tiVGmSGSGKsTLaKLLV~FfePQ~~sG~I 533 (710)
T TIGR01193 492 DISLTIKKNEKITIVGMSGSGKSTLAKLLVGFFEPQAESGEI 533 (710)
T ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEE
T ss_conf 642365078548997367974899998752035899887736
No 317
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.66 E-value=0.036 Score=33.12 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 355702154100367566662489999999
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.=+.+-+|+..+|+|++|+|||||+..+..
T Consensus 25 isl~i~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 25 INLSINAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 177887998999999999999999999727
No 318
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.63 E-value=0.029 Score=33.71 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=27.7
Q ss_pred CCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 100-23557021541003675666624899999998
Q gi|254780615|r 138 KVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 138 kaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+|+ |.=+.+.+|+-.+|+|+.|.|||||+.++.--
T Consensus 14 ~~l~~vs~~v~~Gei~~llGpNGAGKSTll~~i~Gl 49 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 988260679899959999999996199999999779
No 319
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.03 Score=33.59 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=28.0
Q ss_pred CCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 3110023-55702154100367566662489999999
Q gi|254780615|r 136 GIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|..|+|. =+.+-+|..++|+|+.|+|||||+..+..
T Consensus 14 ~~~al~~vsl~I~~Ge~vaiiG~nGsGKSTLl~~l~G 50 (275)
T PRK13639 14 GTVALKGINFKAEEGEMIAILGPNGAGKSTLFLHFNG 50 (275)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9899986488998998999999999649999999973
No 320
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=93.55 E-value=0.055 Score=31.90 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCCCCCCC---CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEE
Q ss_conf 02355702---15410036756666248999999988505788-5268
Q gi|254780615|r 140 IDLISPYQ---KGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVF 183 (478)
Q Consensus 140 ID~l~pig---~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~-v~V~ 183 (478)
||.+.++- .=|-++|-|.-|+|||+++.++...+.+. +| ++||
T Consensus 196 i~g~~l~K~~sE~Qh~L~~GTtG~GKs~~lr~LL~~iR~r-Gd~AIiY 242 (613)
T TIGR02759 196 IGGLPLIKKGSEVQHILIHGTTGSGKSVALRKLLRWIRQR-GDRAIIY 242 (613)
T ss_pred ECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 0780678777742252664541743899999999999863-9858998
No 321
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.55 E-value=0.062 Score=31.54 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=33.5
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECCCHHHHHHHH
Q ss_conf 5570215410036756666248999999988505788526876---216434599999
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG---VGERTREGNDLY 197 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~---iGER~rEv~e~~ 197 (478)
=+.|-+|+.+.|+|.||.|||||+-.+..-.--. .+-..+-+ .+-+++|.+.+-
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t-~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT-SGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CCEEEECCCCHHCCCHHHHHHHH
T ss_conf 6775798689998788886899999986665888-61599656221025457899999
No 322
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.55 E-value=0.043 Score=32.61 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=26.3
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.=+.+-+|+..+|+|++|+|||||+.++...
T Consensus 14 isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~~ 44 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 4878889989999999999899999988876
No 323
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=93.54 E-value=0.039 Score=32.86 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-+|.-.+|+|++|+|||+++..++.-
T Consensus 21 ~Isl~v~~Ge~~aiiG~SGsGKStl~k~llgl 52 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 60728989999999999987899999999579
No 324
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=93.49 E-value=0.048 Score=32.29 Aligned_cols=43 Identities=30% Similarity=0.529 Sum_probs=31.2
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 55702154100367566662489999999885057885268762
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~i 186 (478)
=+.|..|-.+|+.|-||+|||||+- ++-...+=..+-+-|.|.
T Consensus 32 sL~l~~Ge~~gLLG~SG~GKSTLAr-lLlGLe~P~~G~v~F~G~ 74 (267)
T TIGR02769 32 SLSLEEGETVGLLGRSGCGKSTLAR-LLLGLEKPAQGEVSFRGQ 74 (267)
T ss_pred CEEECCCCEEEECCCCCCCHHHHHH-HHHHCCCCCCCEEEECCC
T ss_conf 3231377505523678873778999-987507888740476256
No 325
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.48 E-value=0.046 Score=32.40 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 023557021541003675666624899999998
Q gi|254780615|r 140 IDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 140 ID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=|.-+.+-.|.|+||+|.-|+|||||+.-+..-
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~ 52 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE 52 (530)
T ss_pred CCCCEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 478407689988999899989889999998299
No 326
>PRK10908 cell division protein FtsE; Provisional
Probab=93.47 E-value=0.039 Score=32.85 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 11002-355702154100367566662489999999885057885268
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
..+++ .=+.+-+|..++|.|++|+|||||+..+.. ..+-..+-+.|
T Consensus 15 ~~~L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G-l~~p~~G~i~~ 61 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG-IERPSAGKIWF 61 (222)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEE
T ss_conf 879864387996998999999998079999999965-99998629999
No 327
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=93.47 E-value=0.049 Score=32.22 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=42.2
Q ss_pred HHCCCCCCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 0001342000231100235-57021541003675666624899999998850578852687621643
Q gi|254780615|r 125 EQSTDASILTTGIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190 (478)
Q Consensus 125 ~R~~i~e~L~TGIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~ 190 (478)
++-.-.-|=.+-.++||.+ +.+--|-++.|.||||.|||||...+-|-+-=. .+.+-.-||-=|.
T Consensus 341 ~~V~F~YP~RPd~~aL~~~~L~v~PGEtvAlVGPSGAGKSTlf~LLLRFYDP~-~G~ilLDGvd~r~ 406 (576)
T TIGR02204 341 EQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SGRILLDGVDIRD 406 (576)
T ss_pred CCCCCCCCCCCCCHHHCCCCCEECCCCEEEEECCCCCHHHHHHHHHHHCCCCC-CCEEEECCCCHHH
T ss_conf 12232587988804232577256277658876688762799999998604888-7657746641401
No 328
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.46 E-value=0.57 Score=25.25 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=57.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 00367566662489999999885057885268762164345999999854244200122234443323169997176689
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEP 231 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~ 231 (478)
+.++|+.|+||||-+.-++...++.+.-+.++..=-.|.--+-.+-. +-+ .+.-.+..+....++
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~-~a~--------------~l~v~~~~~~~~~~~ 67 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV-LGE--------------QVGVPVFEEGEGKDP 67 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH-HHH--------------HCCCEEEECCCCCCH
T ss_conf 99989999988999999999999769928999748875779999999-999--------------749859922775587
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHH
Q ss_conf 6787777777877689998669967999715599987601245531144101101223566657888763
Q gi|254780615|r 232 PGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI 301 (478)
Q Consensus 232 ~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERa 301 (478)
. .- .-..-++++.++.|++|+ |. |||--|-..+..++..+.+-+
T Consensus 68 ~-~~------~~~~~~~~~~~~~D~IlI-DT------------------aGr~~~d~~~~~el~~l~~~~ 111 (173)
T cd03115 68 V-SI------AKRAIEHAREENFDVVIV-DT------------------AGRLQIDENLMEELKKIKRVV 111 (173)
T ss_pred H-HH------HHHHHHHHHHCCCCEEEE-EC------------------CCCCCCCHHHHHHHHHHHHHH
T ss_conf 9-99------999999987568998999-78------------------887879999999999998644
No 329
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.45 E-value=0.034 Score=33.27 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=33.5
Q ss_pred CCCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 231100235-5702154100367566662489999999885057885268
Q gi|254780615|r 135 TGIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 135 TGIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
-|..|+|.. +.+.+|+..+|+|+.|+|||||+..+.-- .+...+-+.+
T Consensus 16 g~~~al~~vs~~v~~Gei~~liGpnGaGKSTL~~~i~Gl-~~p~~G~I~~ 64 (255)
T PRK11300 16 GGLLAVNNVNLEVREQEVVSLIGPNGAGKTTVFNCLTGF-YKPTGGTILL 64 (255)
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEE
T ss_conf 999988040889899979999989996499999999679-8898608999
No 330
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.044 Score=32.52 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 10023557021541003675666624899999998
Q gi|254780615|r 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 138 kaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
-.+|.=+.+.+|.-.+|||++|+|||||+..++--
T Consensus 13 f~ldv~l~i~~g~i~~l~GpsGaGKTTLl~~iaGl 47 (352)
T PRK11144 13 LCLTVNLTLPAQGITAIFGRSGAGKTSLINLISGL 47 (352)
T ss_pred EEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99999999889989999999996299999999768
No 331
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.39 E-value=0.035 Score=33.16 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+.+|+..+|.|+.|+|||||+..+..
T Consensus 20 ~vsf~i~~Gei~~l~G~NGaGKTTLlk~i~G 50 (206)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLLAG 50 (206)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 5078986994999989999989999999958
No 332
>PRK13409 putative ATPase RIL; Provisional
Probab=93.39 E-value=0.048 Score=32.28 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=23.9
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 02154100367566662489999999885
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
--.||+.||+|.-|.||||++..+.-...
T Consensus 96 p~~G~v~GLiG~NGaGKST~lkILsG~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKSTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99987899889999989999999958714
No 333
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.37 E-value=0.041 Score=32.76 Aligned_cols=14 Identities=50% Similarity=0.515 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 69988999999999
Q gi|254780615|r 400 ELSEEDKLVVARAR 413 (478)
Q Consensus 400 ~l~~~~~~~i~r~~ 413 (478)
+||--.++-+.-++
T Consensus 427 ~LSGGq~QRvaiAr 440 (520)
T TIGR03269 427 ELSEGERHRVALAQ 440 (520)
T ss_pred HCCHHHHHHHHHHH
T ss_conf 18999999999999
No 334
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=93.36 E-value=0.084 Score=30.70 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=33.1
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 100367566662489999999885057885268762164345999999854
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 201 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~ 201 (478)
-..|+|++|.|||||+..++.+..+.. +-+|++. -|.|+..-|++-|.
T Consensus 438 hT~I~G~tGaGKTvLl~~lla~~~k~~-~~~iv~f--Dk~~g~~~~~~a~g 485 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLLAQALKYG-NPQIVAF--DKDNGAYIFIEALG 485 (796)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE--CCCCCHHHHHHHHC
T ss_conf 749988988878999999999998745-9818998--48973577888749
No 335
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.35 E-value=0.038 Score=32.92 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+-+|+-.+|.|++|+|||||+.+++.
T Consensus 13 ~Vsl~i~~Ge~~aIvG~nGsGKSTL~~~~l~ 43 (226)
T cd03270 13 NVDVDIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 7489985998999987899609898361663
No 336
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.33 E-value=0.045 Score=32.51 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-+|..++|+|++|+|||||+..++..
T Consensus 25 ~is~~i~~Gei~~llG~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CEEEEECCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 70889809849999989999889999998378
No 337
>PRK08118 topology modulation protein; Reviewed
Probab=93.31 E-value=0.055 Score=31.91 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.6
Q ss_pred CCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 41003675666624899999998
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+|+.|+|.+|+|||||+..+...
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67999889998799999999998
No 338
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.30 E-value=0.036 Score=33.11 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=32.8
Q ss_pred CCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 10023-55702154100367566662489999999885057885268
Q gi|254780615|r 138 KVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 138 kaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
.|+|. =+.+.+|+-.|+.|+.|.||||++.++.--..-..+.+.|.
T Consensus 21 ~al~~vs~~v~~Gei~gllGpNGAGKSTli~~l~Gl~~p~sG~i~i~ 67 (306)
T PRK13536 21 PVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVL 67 (306)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 98716177885996999999989809999999967957898779999
No 339
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.28 E-value=0.039 Score=32.86 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=24.9
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 57021541003675666624899999998
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+.+-+|.-.+|+|+.|+|||||+..+..-
T Consensus 22 l~i~~Gei~~liGpNGaGKSTLlk~l~Gl 50 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79838979999999998099999999668
No 340
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.26 E-value=0.029 Score=33.68 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+.+|...+|+|++|+|||||+..+.-.
T Consensus 18 ~vsl~v~~GEi~~liG~nGaGKSTll~~l~G~ 49 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CEEEEECCCCEEEEECCCCCCCCHHHHHHCCC
T ss_conf 31789859969999888999926377876698
No 341
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.25 E-value=0.044 Score=32.55 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=33.3
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 110023-55702154100367566662489999999885057885268762
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~i 186 (478)
++|+|. =+.+.+|+-.||+|.+|+|||||+..+. ...+-.++-+.|-+.
T Consensus 18 v~AL~~Vsl~I~~Gei~giIG~SGaGKSTLlr~i~-gL~~ptsG~I~~~G~ 67 (343)
T PRK11153 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQ 67 (343)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCE
T ss_conf 99996618899899899999999986999999996-599999639999999
No 342
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.049 Score=32.23 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=27.0
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 1100-2355702154100367566662489999999
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.+|+ |.=+.+-+|+..+|.|++|+|||||+..+.-
T Consensus 13 ~~al~~vs~~i~~Gei~~iiGpnGaGKSTl~~~i~G 48 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999846177988998999999999739999999975
No 343
>PTZ00243 ABC transporter; Provisional
Probab=93.25 E-value=0.049 Score=32.22 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 110023557021541003675666624899999998850578852
Q gi|254780615|r 137 IKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 137 IkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
.|-|| +.+-+|+-..|.|+-|+|||+|+..+..-+.+.++.+.
T Consensus 676 L~din--l~v~~G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~ 718 (1560)
T PTZ00243 676 LRDVS--VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred CCCEE--EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 01305--88659978999899998799999999688843563899
No 344
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=93.25 E-value=0.061 Score=31.58 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=25.7
Q ss_pred CCCCCCCCC-CEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 355702154-10036756666248999999988
Q gi|254780615|r 142 LISPYQKGG-KIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 142 ~l~pig~Gq-r~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
-|..=-+|- =+++.||+|||||+|...|++..
T Consensus 442 kL~~~~~GpqIlClvGPPGVGKTSlg~SIA~AL 474 (941)
T TIGR00763 442 KLRGKMKGPQILCLVGPPGVGKTSLGKSIAKAL 474 (941)
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 447788887678720726954222789999996
No 345
>PTZ00301 uridine kinase; Provisional
Probab=93.22 E-value=0.12 Score=29.64 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=19.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 00367566662489999999885
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
+||-||||+||||++..++....
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99968876789999999999987
No 346
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.047 Score=32.35 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=18.7
Q ss_pred HHHHHHHHHH--CCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 7601245531--144101101223566657888763177765325
Q gi|254780615|r 268 QANSEISALL--GRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 (478)
Q Consensus 268 ~A~rEisl~~--g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT 310 (478)
+|.+.||+.+ ||.-+-.|--++=-+.+.+.+-+.-....|+|+
T Consensus 338 ~av~~vsf~i~~GE~l~lvG~sGsGKSTl~r~l~gl~~~~~G~I~ 382 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382 (623)
T ss_pred EEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 665234003589958999767876689999998566466786799
No 347
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.036 Score=33.10 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=33.1
Q ss_pred CCCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 3110023-55702154100367566662489999999885057885268
Q gi|254780615|r 136 GIKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 136 GIkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
+.+|+|. =+.+-+|+-.|++|+.|.||||++.++.--..-..+.+.|.
T Consensus 12 ~~~al~~is~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~i~i~ 60 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60 (220)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 9999858267988983999999998719999999976978896289999
No 348
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.16 E-value=0.05 Score=32.19 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+-+|+-.+|+|++|+|||||+..++.
T Consensus 25 ~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 8388992883999999999988999999837
No 349
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.14 E-value=0.052 Score=32.06 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=32.3
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1100-235570215410036756666248999999988505788526876
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
+.++ |.=+.+-+|--+.|.|+||+|||||+..+. ...+-..+.+.|.+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig-~ld~pt~G~v~i~g 66 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG-GLDKPTSGEVLING 66 (226)
T ss_pred EEECCCCEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECC
T ss_conf 67524625887499899998999998999999996-46678884699998
No 350
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.14 E-value=0.34 Score=26.74 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCC-EEEE
Q ss_conf 154100367566662489999999885057885-2687
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFA 184 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v-~V~~ 184 (478)
...-+-|.||.|.|||.||.-+.+...+.+... .+|+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 68957998799997899999999999862998648850
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.12 E-value=0.05 Score=32.16 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=8.8
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHH
Q ss_conf 021541003675666624899999
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMEL 169 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~ 169 (478)
+-+|.|++|.|+-|+|||||+..+
T Consensus 345 i~~gdrIaiiG~NG~GKSTLlk~l 368 (530)
T COG0488 345 IDRGDRIAIVGPNGAGKSTLLKLL 368 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 658988999899987789999998
No 352
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.11 E-value=0.035 Score=33.16 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=27.9
Q ss_pred CCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 100-23557021541003675666624899999998
Q gi|254780615|r 138 KVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 138 kaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+|+ |.=+.+-+|..++|+|.+|+|||||+..+..-
T Consensus 21 ~aL~~vsl~I~~Ge~~~iiG~nGsGKSTLl~~l~Gl 56 (286)
T PRK13641 21 KGLDNISFELEDGSFVALIGHTGSGKSTLMQHFNAL 56 (286)
T ss_pred CEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 124310679869999999999983999999999659
No 353
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=93.11 E-value=0.042 Score=32.66 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.1
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHH
Q ss_conf 57021541003675666624899999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMEL 169 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~ 169 (478)
+-|.+|--++|+|.||.|||||+-=+
T Consensus 26 l~i~~GE~~~IvG~SGSGKSTLLHlL 51 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLL 51 (221)
T ss_pred CEEECCCEEEEECCCCCCHHHHHHHH
T ss_conf 12306633798736787168999987
No 354
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.07 E-value=0.05 Score=32.19 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 23557021541003675666624899999998850578852
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
|.=+.+-+|+-.+|.|+.|+|||||+..++-- .+...+-+
T Consensus 18 ~vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl-~~p~~G~i 57 (173)
T cd03230 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-LKPDSGEI 57 (173)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEE
T ss_conf 20878879939999878997999999999768-57787889
No 355
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.06 E-value=0.042 Score=32.65 Aligned_cols=49 Identities=20% Similarity=0.353 Sum_probs=33.9
Q ss_pred CCCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 231100235-57021541003675666624899999998850578852687
Q gi|254780615|r 135 TGIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 135 TGIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
-|.+|+|.+ +.+.+|+..+|+|+.|.|||||+..+.- ..+...+-+.|.
T Consensus 13 g~~~al~~vsl~v~~Gei~~liGpNGaGKSTLl~~i~G-l~~p~~G~I~~~ 62 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFG 62 (242)
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEEC
T ss_conf 99898745078988998999998999759999999967-957885599999
No 356
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=93.06 E-value=0.13 Score=29.56 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=27.2
Q ss_pred CCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 23557-0215410036756666248999999988505
Q gi|254780615|r 141 DLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAKA 176 (478)
Q Consensus 141 D~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~ 176 (478)
+.+.| -|+..++||-|++|+|||+|...++......
T Consensus 40 ~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~ 76 (325)
T PRK09435 40 DALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 76 (325)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9863017982599742799986889999999999967
No 357
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.05 E-value=0.06 Score=31.68 Aligned_cols=37 Identities=30% Similarity=0.575 Sum_probs=31.9
Q ss_pred CCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 1100235-570215410036756666248999999988
Q gi|254780615|r 137 IKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 137 IkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
++++|.. +.+.+|+..||.|-||+|||+++..++.-.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~ll 55 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLL 55 (316)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 77771405887589689998389788999999998466
No 358
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.03 E-value=0.043 Score=32.63 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 023557021541003675666624899999998
Q gi|254780615|r 140 IDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 140 ID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.|.=+.+-+|+-.+|.|..|+|||||+..+..-
T Consensus 17 ~disl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl 49 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 977778779979999999998199999999679
No 359
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=92.99 E-value=0.042 Score=32.68 Aligned_cols=48 Identities=31% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 11002-3557021541003675666624899999998850578852687
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
..|+| .=+.+-+|+-.|++|+.|.||||++.++.--..-..+.+.|++
T Consensus 18 ~~al~~vs~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~v~i~G 66 (304)
T PRK13537 18 KLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCG 66 (304)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 9998371778869959999999897299999999779568976899999
No 360
>PRK13544 consensus
Probab=92.98 E-value=0.05 Score=32.16 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+-+|+..+|.|+.|+|||||+..++.-
T Consensus 19 ~vs~~i~~Gei~~l~G~NGsGKSTLl~~i~Gl 50 (208)
T PRK13544 19 NLSFTAKQNSLTLVIGNNGSGKTSLLRLLAGL 50 (208)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 41589829949999999999899999999588
No 361
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=92.98 E-value=0.045 Score=32.47 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23110023557021541003675666624899999998850
Q gi|254780615|r 135 TGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 135 TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
.++|.|| +.+.+|-=+.|+|+||.||||||--+ +....
T Consensus 16 ~~LK~in--l~i~~GE~~~~IG~SGAGKSTLLR~i-NrL~~ 53 (253)
T TIGR02315 16 QALKNIN--LEINPGEFVAVIGPSGAGKSTLLRCI-NRLVE 53 (253)
T ss_pred EEEEEEC--CEEECCEEEEEECCCCCCHHHHHHHH-HHHCC
T ss_conf 7885311--43416517999737887267999877-53026
No 362
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.98 E-value=0.057 Score=31.81 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 13420002311002355702154100367566662489999999
Q gi|254780615|r 128 TDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 128 ~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
.+..+.-+|| =+.+-.|--.+|+|+||+|||||+-.+.-
T Consensus 340 ivPk~~l~gi-----~F~~~aGe~laIIGPSgSGKStLaR~~vG 378 (556)
T TIGR01842 340 IVPKPTLRGI-----SFAIQAGEALAIIGPSGSGKSTLARILVG 378 (556)
T ss_pred CCCHHHHCCC-----CEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 7761422786-----21563774588874786525889878872
No 363
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=92.96 E-value=0.67 Score=24.77 Aligned_cols=43 Identities=28% Similarity=0.187 Sum_probs=29.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 0036756666248999999988505788526876216434599
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 194 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~ 194 (478)
+.++|+.||||||-+.-++....+.+.-|.++..=-.|.--+.
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~e 46 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIE 46 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 9998999998899999999999977992899975877688999
No 364
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.94 E-value=0.05 Score=32.17 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 110023-557021541003675666624899999998850578852
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
.+++|. =+.+.+|+-.+|.|+.|.|||||+..+.-- .+.+.+-+
T Consensus 13 ~~aL~~vsl~i~~Gei~~lvG~nGaGKSTl~~~i~Gl-~~p~~G~i 57 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-YKPDSGEI 57 (163)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEE
T ss_conf 9988554889879989999988998999999999577-68985789
No 365
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=92.87 E-value=0.13 Score=29.54 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEECHHHHHHHHH
Q ss_conf 9999999999999998998-99999973655699889999999999999-834997110000578973615999999999
Q gi|254780615|r 370 QEHYDVARRVQEILQRYKS-LQDIIAILGMDELSEEDKLVVARARKLER-FMSQPFHVAESFTGLPGKFVSLEETIRGFK 447 (478)
Q Consensus 370 ~~h~~~a~~~r~~l~~y~e-l~~~i~~~g~~~l~~~~~~~i~r~~~i~~-fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~ 447 (478)
+.|.++..-++..|+.-.| .+.+.++ ...|..-+.++...++ -.=||--+.-+=+--+| --+|-++|+.+|
T Consensus 195 ~~a~~v~~~a~~~l~l~~esvqmlsqm------thadearvq~G~~~~r~~gW~Ppv~~tsA~~G~G-i~EL~daI~eH~ 267 (333)
T TIGR00750 195 EGAEEVKTLARLMLALDLESVQMLSQM------THADEARVQKGEIYRREKGWRPPVLKTSAVEGRG-IDELWDAIEEHK 267 (333)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHH
T ss_conf 665899999999888888899999865------3333444302655110105899638873356887-167899999999
Q ss_pred HHH--CCCC
Q ss_conf 997--6764
Q gi|254780615|r 448 GLV--QGEY 454 (478)
Q Consensus 448 ~il--~g~~ 454 (478)
..+ .|.+
T Consensus 268 ~~l~~~G~~ 276 (333)
T TIGR00750 268 KFLTESGLL 276 (333)
T ss_pred HHHHHCCCH
T ss_conf 999863606
No 366
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.85 E-value=0.7 Score=24.67 Aligned_cols=92 Identities=23% Similarity=0.198 Sum_probs=60.9
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 21541003675666624899999998850578852687621643459999998542442001222344433231699971
Q gi|254780615|r 147 QKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
-||--+-+.|-||.|||||+..+.....+. ...++.+=|..=| ..+. .+
T Consensus 2 ~kg~viWltGlsgSGKTTia~~l~~~L~~~--~~~~~~LDGD~lR---~~l~----~~---------------------- 50 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTISHALAEKLRAR--GYPVEVLDGDIVR---TNLS----KG---------------------- 50 (175)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEECCHHHH---HHHC----CC----------------------
T ss_conf 988899988989999999999999999986--9967997768888---7536----78----------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 76689678777777787768999866996799971559998760
Q gi|254780615|r 227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAN 270 (478)
Q Consensus 227 ~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~ 270 (478)
-.=+...|..-.....-+|.++-++|-.|++-.=|.++-.++.
T Consensus 51 -lgfs~~dR~~n~~r~~~la~~l~~~g~~vIvs~isp~~~~R~~ 93 (175)
T PRK00889 51 -LGFSKEDRDTNIRRIGFVAHLLTRHGVIVLVSAISPYRETREE 93 (175)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
T ss_conf -8989899999999999999999818986888504799999999
No 367
>KOG0055 consensus
Probab=92.80 E-value=0.092 Score=30.43 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=34.8
Q ss_pred CCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 11002-35570215410036756666248999999988505788526876216434599
Q gi|254780615|r 137 IKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 194 (478)
Q Consensus 137 IkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~ 194 (478)
+++.+ .=+.+-.||.+.|+|+||+||||+++-+.+-..-..+ .|+. =|+.-++.+
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G--~V~i-DG~di~~~~ 421 (1228)
T KOG0055 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG--EVLI-DGEDIRNLN 421 (1228)
T ss_pred CHHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC--EEEE-CCCCCHHCC
T ss_conf 6433775798279988999889998799999999972688786--5997-685601226
No 368
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.79 E-value=0.053 Score=32.02 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=32.4
Q ss_pred CCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10023-5570215410036756666248999999988505788526876
Q gi|254780615|r 138 KVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 138 kaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
+|+|. =+.+.+|+-.|++|+.|.||||++.++.--.. .+++-+.+.+
T Consensus 16 ~al~~vsf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~-p~~G~i~i~G 63 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-PDSGSVQVCG 63 (301)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECC
T ss_conf 99736067885981999999999819999999967956-8977799927
No 369
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=92.77 E-value=0.33 Score=26.83 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=48.5
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 003675666624899999998850578852687621643-4599999985424420012223444332316999717668
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT-REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~-rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
++|.||+..|||..+-+++.. .+.-.+|++-++.. .|+.+=++..+... . -.-.++ .+
T Consensus 1 iLVtGG~rSGKS~~AE~la~~----~~~~~~YiAT~~~~D~Em~~RI~~Hr~~R---------~---~~w~ti-----E~ 59 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLALA----SGGPVVYIATAQAFDDEMAERIARHRARR---------P---AGWTTI-----EE 59 (166)
T ss_pred CEEECCCCCCHHHHHHHHHHH----CCCCEEEEECCCCCCHHHHHHHHHHHHCC---------C---CCCEEE-----EC
T ss_conf 988688773389999999985----59981999769888889999999999718---------9---996799-----77
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHH
Q ss_conf 967877777778776899986-6996799971559998760
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAN 270 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd-~g~dVll~~Dsltr~a~A~ 270 (478)
| .-+++.++. .+.+ .+++|+||-|.-..
T Consensus 60 ~-----------~~l~~~l~~~~~~~-~vLiDclt~wl~N~ 88 (166)
T pfam02283 60 P-----------LDLAEALARLPGGD-VVLVDCLTLWLTNL 88 (166)
T ss_pred C-----------CCHHHHHHHCCCCC-EEEEECHHHHHHHH
T ss_conf 4-----------45999998469898-69997177899998
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.77 E-value=0.066 Score=31.37 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=28.4
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 570215410036756666248999999988505788526876
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
+.+.+|..+-|+|+||+|||||+--+ +..-.-+.+-+.+.+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRcl-N~LE~~~~G~I~i~g 63 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDG 63 (240)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECC
T ss_conf 16738978999899999888999999-778688786499998
No 371
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=92.76 E-value=0.042 Score=32.65 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=22.6
Q ss_pred CEEEEEECHHHHHHHHHHHHH--HHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 679997155999876012455--31144101101223566657888763177765325
Q gi|254780615|r 255 DVLFFVDNIFRFTQANSEISA--LLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 (478)
Q Consensus 255 dVll~~Dsltr~a~A~rEisl--~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT 310 (478)
++.+-+.+++... ....+|+ .-||.-+-.|-.++=-+.+.+++-..-+-..|+|+
T Consensus 255 ~~~l~~~~l~~~~-~~~~vsl~v~~GEivgivG~nGsGKSTL~k~L~Gl~~p~~G~I~ 311 (501)
T PRK11288 255 DVRLRLKGLKGPG-LREPISFAVRRGEIVGFFGLVGAGRSELMKLLYGATRRTAGQVY 311 (501)
T ss_pred CEEEEEEECCCCC-CCCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf 4379998503787-45663478708839997568886487999984387488766599
No 372
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=92.74 E-value=0.72 Score=24.57 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=17.0
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 003675666624899999998
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n 172 (478)
+-|.|+||+||++|+..++..
T Consensus 4 ivl~GPSG~GK~tl~~~L~~~ 24 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLDE 24 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999898999999999999984
No 373
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.74 E-value=0.062 Score=31.56 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
|.=+.+.+|.-.+|+|+-|+|||||+..+.+-..
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~ 53 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2368865997999989988899999999865678
No 374
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.70 E-value=0.12 Score=29.71 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEEEC
Q ss_conf 2311002355702154100367566662489999999885057---8852687621
Q gi|254780615|r 135 TGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH---GGYSVFAGVG 187 (478)
Q Consensus 135 TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~---~~v~V~~~iG 187 (478)
.=.++++.+.+..+..|+.|+|.+|+||||++..++.+.+..+ .++.++..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~ 263 (824)
T COG5635 208 DDQDALPGLEALEKYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLN 263 (824)
T ss_pred CHHHHHHHCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 11234610035866523334468887626799999999741525665677344423
No 375
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.69 E-value=0.052 Score=32.07 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 557021541003675666624899999998850578852687
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~ 184 (478)
-+.+-+| -.+|+|+.|.|||||+..+.--..-..+.+.|..
T Consensus 20 s~~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g 60 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 (211)
T ss_pred EEEECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 4688897-5999999982399999999759668962999999
No 376
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.69 E-value=0.059 Score=31.69 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 1002-35570215410036756666248999999988505788526
Q gi|254780615|r 138 KVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182 (478)
Q Consensus 138 kaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V 182 (478)
+|+| .=+.+-+|+-.|+.|+.|.|||||+..+.--.....+.+.|
T Consensus 14 ~al~~vs~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G~i~i 59 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9871516688698199999999999999999995783789899999
No 377
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.64 E-value=0.067 Score=31.34 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 23557021541003675666624899999998850578852
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
|.=+.+.+|.-.+|.|+.|+|||||+..+..- .+.+.+..
T Consensus 18 ~vs~~v~~Gei~~liGpNGaGKSTL~~~i~Gl-~~p~~G~I 57 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-LPVKSGSI 57 (230)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCEEE
T ss_conf 71779999979999999994099999999779-99995499
No 378
>KOG1514 consensus
Probab=92.62 E-value=0.56 Score=25.28 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=66.7
Q ss_pred CCCCCCCCCC-CCCCCEECCCCCCCCHHHHHHHHHHHHHHC--CCC--CEEEEEE-CCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1100235570-215410036756666248999999988505--788--5268762-164345999999854244200122
Q gi|254780615|r 137 IKVIDLISPY-QKGGKIGLFGGAGVGKTVLIMELINNVAKA--HGG--YSVFAGV-GERTREGNDLYHEMIDSKVNIDPR 210 (478)
Q Consensus 137 IkaID~l~pi-g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~--~~~--v~V~~~i-GER~rEv~e~~~e~~~~~~~~~~~ 210 (478)
-+-++.+++. +-|..+-|-|-+|+|||....+.+.+.+.. ... ...|+-| |-|=++-+++|+.+.+.--
T Consensus 409 ~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~ls----- 483 (767)
T KOG1514 409 EDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALS----- 483 (767)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCC-----
T ss_conf 999997627777740799846999883212999999999877505789860798714461588999999999755-----
Q ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEECHHHHH
Q ss_conf 2344433231699971766896787777777877689998---66996799971559998
Q gi|254780615|r 211 KNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR---DQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 211 ~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfr---d~g~dVll~~Dsltr~a 267 (478)
+.|.....+..+.+.||- ..-+-.++++|.+--..
T Consensus 484 ----------------------g~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lv 521 (767)
T KOG1514 484 ----------------------GERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILV 521 (767)
T ss_pred ----------------------CCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
T ss_conf ----------------------57430778899998654167878787799963578773
No 379
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=92.61 E-value=0.029 Score=33.72 Aligned_cols=34 Identities=35% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 0023557021541003675666624899999998
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.+|.|...-+|+..-+.|.||||||+|+..++-+
T Consensus 25 g~~~L~~~l~~k~sv~~G~SGVGKSTLiN~L~~~ 58 (161)
T pfam03193 25 GIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPE 58 (161)
T ss_pred CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 9999999867985999889998899999885634
No 380
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=92.58 E-value=0.19 Score=28.32 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=84.3
Q ss_pred CCCCCCCCCCC---CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 11002355702---1541003675666624899999998850578852687-6216434599999985424420012223
Q gi|254780615|r 137 IKVIDLISPYQ---KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKN 212 (478)
Q Consensus 137 IkaID~l~pig---~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~ 212 (478)
+-++|.|.--. .++=+.|+|++|.|||++++++|.+. .+.+ --||+ =+|. --.-+.+.|....+..
T Consensus 474 l~~~d~F~~~~~~i~NYN~~~~g~sG~GKSf~~Q~~~~~~-L~~G-~kv~viDvG~---Sy~KLC~~lgG~Yie~----- 543 (900)
T TIGR02746 474 LSAFDPFDSDLLNITNYNIAVVGGSGAGKSFFMQELIVSV-LSRG-GKVWVIDVGR---SYKKLCEMLGGTYIEF----- 543 (900)
T ss_pred EEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCC-CEEEEEEECC---CHHHHHHHHCCCEECC-----
T ss_conf 8778303378667677148997288987168798999998-5179-8489996078---8488876518712104-----
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH--HHHH--HHHHHHCCCCEEEEE----ECHHHHHHHHHHHHHHHCCCC---
Q ss_conf 44433231699971766896787777777--8776--899986699679997----155999876012455311441---
Q gi|254780615|r 213 NGSAVGSKCSLLYGQMNEPPGARSRVALT--GLTV--AEHFRDQGQDVLFFV----DNIFRFTQANSEISALLGRIP--- 281 (478)
Q Consensus 213 ~~~~~~~~tv~v~~~~~~~~~~r~~~~~~--a~ti--AEyfrd~g~dVll~~----Dsltr~a~A~rEisl~~g~~P--- 281 (478)
.+-+.+..+ |+| ++.- .|..-+++++|--+- |++-... .+++-|-
T Consensus 544 -----~~e~~i~LN------------PFTHL~i~~A~~~~~~~~~~~v~~i~Geqv~~~~~i~-------~~ia~MAGlD 599 (900)
T TIGR02746 544 -----SPESTICLN------------PFTHLDIEEARFDIIDFDGNNVTEIDGEQVDEIDQIT-------ALIALMAGLD 599 (900)
T ss_pred -----CCCCCCCCC------------CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH-------HHHHHHHCCC
T ss_conf -----667763238------------7444660003332267363467756740288999999-------9999884466
Q ss_pred -HHHHCCHHHHHHHH------HHHHHHC------CCCCCCEEEEEEEEECC-----CCCCC---HHHHHHHHHCC
Q ss_conf -01101223566657------8887631------77765325666543047-----66441---05899997503
Q gi|254780615|r 282 -SAVGYQSTLALEMG------ELQERIT------TTLKGSITSVQAIYVPA-----DDLTD---PAPATSFTHLD 335 (478)
Q Consensus 282 -~~~gYp~~~f~~~~------~l~ERag------~~~~GSIT~~~tV~~~~-----dD~~d---pi~~~~~si~D 335 (478)
+-+| -+-.+.- .++++|- ..++-.||.+..-|... |+-+| |.+..+.-.|+
T Consensus 600 l~P~~---~l~~~q~lmaryCs~l~~AI~~~W~~~g~~a~~tdV~~~L~~~~~e~~~~~~DGir~r~~~l~~~L~ 671 (900)
T TIGR02746 600 LSPEG---GLSDEQELMARYCSLLEEAILAAWKEKGNEATITDVADALEQLRLEEEDSENDGIRPRIKDLGKLLN 671 (900)
T ss_pred CCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 68455---6788889999999999999999999712248848999999852133134568860168999998732
No 381
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.58 E-value=0.065 Score=31.43 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=27.4
Q ss_pred CCCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 2311002-35570215410036756666248999999
Q gi|254780615|r 135 TGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 135 TGIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+|-++++ .=+.+-+|+..+|.|++|.|||||+..+.
T Consensus 20 ~~k~iL~~vs~~v~~Gei~~ilGpnGaGKSTLl~~l~ 56 (194)
T cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred CCCEEEECCEEEEECCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9998788838899088199999899951999999985
No 382
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=92.57 E-value=0.066 Score=31.38 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=14.2
Q ss_pred CCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 87888889779848988592376558878752301
Q gi|254780615|r 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVD 103 (478)
Q Consensus 69 I~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PLD 103 (478)
|..|..+--.|.. -.|...|-|++.+.-.|..
T Consensus 26 i~~Ge~~~LvG~N---GaGKSTL~k~l~G~l~~~~ 57 (490)
T PRK10938 26 LNAGDSWAFVGSN---GSGKSALARALAGELPLLK 57 (490)
T ss_pred ECCCCEEEEECCC---CCHHHHHHHHHHCCCCCCC
T ss_conf 9899899999799---9779999999956998788
No 383
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.51 E-value=0.12 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=27.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCC--EEEEEECCCH
Q ss_conf 00367566662489999999885057885--2687621643
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGY--SVFAGVGERT 190 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v--~V~~~iGER~ 190 (478)
.+|+|++|+||||++-+++++.+...... .=.+-|.||+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers 180 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS 180 (308)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 69965998870779999999863151126773289971500
No 384
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=92.51 E-value=0.07 Score=31.22 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCEEEEEECHHHHH------HHHHHHHHHH--CCCCHHHHCCHHHHHHHHHHH
Q ss_conf 96799971559998------7601245531--144101101223566657888
Q gi|254780615|r 254 QDVLFFVDNIFRFT------QANSEISALL--GRIPSAVGYQSTLALEMGELQ 298 (478)
Q Consensus 254 ~dVll~~Dsltr~a------~A~rEisl~~--g~~P~~~gYp~~~f~~~~~l~ 298 (478)
.++++-+.+++.+- .+.+.+|+.+ ||.-+-.|-.++=-+.+.+++
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~~l~~vsf~v~~GEi~gi~G~nGsGKsTLl~~L 308 (513)
T PRK13549 256 GDEILRVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCL 308 (513)
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 87158996446642688874365233578868848997479886589999998
No 385
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=92.51 E-value=0.15 Score=29.07 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=22.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 00367566662489999999885057
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAH 177 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~ 177 (478)
+.+.|++|||||||+..++.+..+.+
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~~ 67 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQN 67 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989899778899999999985443
No 386
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.50 E-value=0.06 Score=31.65 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=31.6
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 110023-557021541003675666624899999998850578852
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
+.|+|. =+.+-+|+-.||+|+.|+||||++..+.--..-..+.+.
T Consensus 18 ~~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~ 63 (218)
T cd03266 18 VQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 8987262789859829999999998499999999779778974899
No 387
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.49 E-value=0.29 Score=27.13 Aligned_cols=156 Identities=20% Similarity=0.314 Sum_probs=75.8
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003675666624899999998850578-----852687621643459999998542442001222344433231699971
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~-----~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
-.++|.+|||||.+.-.++..++..+. +..||. ++-..++++
T Consensus 197 piLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~---------------------------------LDlg~LvAG 243 (852)
T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA---------------------------------LDMGALIAG 243 (852)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEE---------------------------------EEHHHHHCC
T ss_conf 72127999879999999999986699997885185127---------------------------------528877521
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHH-----HH------HHHCCCCHHHHCCHHHHHHH
Q ss_conf 766896-7877777778776899986699679997155999876012-----45------53114410110122356665
Q gi|254780615|r 227 QMNEPP-GARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSE-----IS------ALLGRIPSAVGYQSTLALEM 294 (478)
Q Consensus 227 ~~~~~~-~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rE-----is------l~~g~~P~~~gYp~~~f~~~ 294 (478)
+.-.-- -.|++. +-+.......+|.||+|.+--..-|++- .+ |+.|+.-.-.+ |.+.+-
T Consensus 244 tkyRGeFEeRlk~------ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgA---TT~~EY 314 (852)
T TIGR03346 244 AKYRGEFEERLKA------VLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGA---TTLDEY 314 (852)
T ss_pred CCCCHHHHHHHHH------HHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE---CCHHHH
T ss_conf 5300789999999------9999985899879996125553268876664106777437874798559982---789999
Q ss_pred HHHHHHHCCCCCCCEE-EEEEEEECCCCCCCHHHHHHHHHCCCEE--------------------EEEHHHHHCCCCC--
Q ss_conf 7888763177765325-6665430476644105899997503425--------------------6411566318867--
Q gi|254780615|r 295 GELQERITTTLKGSIT-SVQAIYVPADDLTDPAPATSFTHLDATT--------------------VLSRQISEKGIYP-- 351 (478)
Q Consensus 295 ~~l~ERag~~~~GSIT-~~~tV~~~~dD~~dpi~~~~~si~Dg~i--------------------vLsr~la~~g~~P-- 351 (478)
.+..|+ .+.++ -|+.|.+ .+|-.+.+..||.|.. -||...-.-+.+|
T Consensus 315 rk~iEk-----D~AL~RRFq~I~V-----~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPDK 384 (852)
T TIGR03346 315 RKYIEK-----DAALERRFQPVFV-----DEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred HHHHHC-----CHHHHHHCCCCCC-----CCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 988322-----6889973771204-----799868999999976999976279267399999999971346677889618
Q ss_pred CCCCCCCC
Q ss_conf 53223554
Q gi|254780615|r 352 AIDPLDSN 359 (478)
Q Consensus 352 AId~~~S~ 359 (478)
|||++...
T Consensus 385 AIDlLDeA 392 (852)
T TIGR03346 385 AIDLIDEA 392 (852)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 388
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.078 Score=30.90 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=13.4
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 570215410036756666248999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+.+.+|+..+|.|.+|+||||++..++
T Consensus 37 f~v~~GE~vaLvGeSGSGKSTl~~~l~ 63 (623)
T PRK10261 37 FSLQRGETLAIVGESGSGKSVTALALM 63 (623)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 698899899999899978999999997
No 389
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.44 E-value=0.71 Score=24.61 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=29.8
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECCC
Q ss_conf 557021541003675666624899999998850578--85268762164
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHG--GYSVFAGVGER 189 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~--~v~V~~~iGER 189 (478)
..+..+|+.+.++|+.||||||.+.-++.+.+..++ -|.++..=-.|
T Consensus 204 ~~~~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyR 252 (412)
T PRK05703 204 EDILEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYR 252 (412)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 6654567369998888875676999999999997299817999837677
No 390
>PRK05642 DNA replication initiation factor; Validated
Probab=92.44 E-value=0.22 Score=27.95 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=24.4
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 003675666624899999998850578852687621
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 187 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iG 187 (478)
+-|+|++|+|||.|++-+++... ..+.-++|.-+.
T Consensus 48 l~i~G~~G~GKTHLL~A~~~~~~-~~~~~~~yl~~~ 82 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFE-QRGEPAVYLPLA 82 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEEHH
T ss_conf 89988999988999999999998-079967997899
No 391
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.39 E-value=0.057 Score=31.81 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=51.8
Q ss_pred CCCEEEEEECHHHHH-HHHHHHHHHH--CCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHH
Q ss_conf 996799971559998-7601245531--1441011012235666578887631777653256665430476644105899
Q gi|254780615|r 253 GQDVLFFVDNIFRFT-QANSEISALL--GRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPAT 329 (478)
Q Consensus 253 g~dVll~~Dsltr~a-~A~rEisl~~--g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~ 329 (478)
.+++++-+.+++..- .+.+.+|+.+ ||.-+-.|-.++=-+.+.+++-..-+-..|+|+. .|.+++..-+..
T Consensus 246 ~~~~~l~~~~l~~~~~~~l~~vsf~v~~GEivgl~G~nGsGKsTL~~~l~Gl~~~~~G~I~~------~G~~~~~~~~~~ 319 (491)
T PRK10982 246 PGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL------HGKKINNHNANE 319 (491)
T ss_pred CCCEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE------CCEECCCCCHHH
T ss_conf 87617999523237887420267999689689977899997889999981986787777999------999998789899
Q ss_pred HHHHCCCEEEEEHHHHHCCCCCCCCC
Q ss_conf 99750342564115663188675322
Q gi|254780615|r 330 SFTHLDATTVLSRQISEKGIYPAIDP 355 (478)
Q Consensus 330 ~~si~Dg~ivLsr~la~~g~~PAId~ 355 (478)
.+. .|--+...+-...+.|+-.++
T Consensus 320 ~~~--~~~~~v~~~r~~~~~~~~~~~ 343 (491)
T PRK10982 320 AIN--HGFALVTEERRSTGIYAYLDI 343 (491)
T ss_pred HHH--CCCEEEEHHHHHCCCCCCCCH
T ss_conf 986--265252033320440035758
No 392
>PRK06893 DNA replication initiation factor; Validated
Probab=92.38 E-value=0.47 Score=25.78 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=25.0
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 154100367566662489999999885057885268762
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~i 186 (478)
.++-.-|.|++|+|||.|++-+++..... .-.++|.-.
T Consensus 38 ~~~~l~i~G~~gsGKTHLLqa~~~~~~~~-~~~~~yi~~ 75 (229)
T PRK06893 38 KQPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPL 75 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEEH
T ss_conf 69879998999998899999999999971-898599973
No 393
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=92.38 E-value=0.49 Score=25.65 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=25.3
Q ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 702154100367566662489999999885057
Q gi|254780615|r 145 PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177 (478)
Q Consensus 145 pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~ 177 (478)
.+..|+-..|.|+.|.||||++..+..++.-++
T Consensus 17 ~l~~g~~~iItGpN~sGKSt~Lr~i~l~~~~a~ 49 (162)
T cd03227 17 TFGEGSLTIITGPNGSGKSTILDAIGLALGGAQ 49 (162)
T ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 608986899989987757999999999999863
No 394
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.37 E-value=0.077 Score=30.95 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.2
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 570215410036756666248999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+-+-+|++++|+|+||.|||+|++-++
T Consensus 31 L~v~~Ge~vaivG~SGSGKSTLl~vlA 57 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 786278658887788875776999995
No 395
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.34 E-value=0.082 Score=30.78 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=20.6
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 570215410036756666248999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+.+-.| -.+|+|++|+|||||+..+.
T Consensus 18 l~ip~G-itaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 18 IPFPPG-LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred EECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 973898-28999999998899999999
No 396
>PRK07667 uridine kinase; Provisional
Probab=92.32 E-value=0.16 Score=28.90 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=22.3
Q ss_pred CCCCC--EECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 21541--00367566662489999999885
Q gi|254780615|r 147 QKGGK--IGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 147 g~Gqr--~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
.|++| +||=|++|+||||++..++....
T Consensus 10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~ 39 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTTFVANLKENMK 39 (190)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 759869999779897889999999999986
No 397
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.31 E-value=0.073 Score=31.11 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.=+.+-+|.++||+|..|.|||||+.-++-
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7358860798998987899858999999958
No 398
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=92.30 E-value=0.056 Score=31.86 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 34599999985424
Q gi|254780615|r 190 TREGNDLYHEMIDS 203 (478)
Q Consensus 190 ~rEv~e~~~e~~~~ 203 (478)
.+|+.++++++.+.
T Consensus 180 ~~~v~~ll~~l~~~ 193 (648)
T PRK10535 180 GEEVMAILHQLRDR 193 (648)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999977
No 399
>KOG0060 consensus
Probab=92.30 E-value=0.091 Score=30.48 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 69988999999999999983499711
Q gi|254780615|r 400 ELSEEDKLVVARARKLERFMSQPFHV 425 (478)
Q Consensus 400 ~l~~~~~~~i~r~~~i~~fL~Qp~~~ 425 (478)
.||.-.++-+..|| -|+.||.|.
T Consensus 570 vLS~GEqQRLa~AR---Lfy~kPk~A 592 (659)
T KOG0060 570 VLSPGEQQRLAFAR---LFYHKPKFA 592 (659)
T ss_pred HCCHHHHHHHHHHH---HHHCCCCEE
T ss_conf 36988888999999---986088368
No 400
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.23 E-value=0.37 Score=26.48 Aligned_cols=157 Identities=21% Similarity=0.294 Sum_probs=76.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003675666624899999998850578-----852687621643459999998542442001222344433231699971
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~-----~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
..++|.+|||||.+.-.++..+++.+. +..||.+ +-..++++
T Consensus 202 piLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~L---------------------------------Dlg~L~AG 248 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL---------------------------------DMGALVAG 248 (857)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEE---------------------------------EHHHHHHC
T ss_conf 758789998899999999999983899978816902473---------------------------------38878614
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH-----------HHHHCCCCHHHHCCHHHHHHH
Q ss_conf 766896-78777777787768999866996799971559998760124-----------553114410110122356665
Q gi|254780615|r 227 QMNEPP-GARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEI-----------SALLGRIPSAVGYQSTLALEM 294 (478)
Q Consensus 227 ~~~~~~-~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEi-----------sl~~g~~P~~~gYp~~~f~~~ 294 (478)
+.-.-- -.|++... +....+..++.||+|.+-...-|++-= .|+.|+.-.-.+-++ .+-
T Consensus 249 akyRGeFEeRLk~il------~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGelr~IGATT~---~EY 319 (857)
T PRK10865 249 AKYRGEFEERLKGVL------NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL---DEY 319 (857)
T ss_pred CCCCHHHHHHHHHHH------HHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCH---HHH
T ss_conf 765211799999999------99984789869997343543368877775347888678873798549994589---999
Q ss_pred HHHHHHHCCCCCCCEE-EEEEEEECCCCCCCHHHHHHHHHCCCEE--------------------EEEHHHHHCCCCC--
Q ss_conf 7888763177765325-6665430476644105899997503425--------------------6411566318867--
Q gi|254780615|r 295 GELQERITTTLKGSIT-SVQAIYVPADDLTDPAPATSFTHLDATT--------------------VLSRQISEKGIYP-- 351 (478)
Q Consensus 295 ~~l~ERag~~~~GSIT-~~~tV~~~~dD~~dpi~~~~~si~Dg~i--------------------vLsr~la~~g~~P-- 351 (478)
.+..|+ ...++ -|+.| .+.+|-.+.+..||.|.. -||...-..+..|
T Consensus 320 rk~iEk-----D~AL~RRFq~V-----~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeAl~aAV~LS~RYI~dR~LPDK 389 (857)
T PRK10865 320 RQYIEK-----DAALERRFQKV-----FVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389 (857)
T ss_pred HHHCCC-----CHHHHHHCCCC-----CCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 987134-----58899853710-----06899879999999988889987379158799999999986245666678148
Q ss_pred CCCCCCCCC
Q ss_conf 532235543
Q gi|254780615|r 352 AIDPLDSNS 360 (478)
Q Consensus 352 AId~~~S~S 360 (478)
|||++....
T Consensus 390 AIDLLDeA~ 398 (857)
T PRK10865 390 AIDLIDEAA 398 (857)
T ss_pred HHHHHHHHH
T ss_conf 988999998
No 401
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.23 E-value=0.19 Score=28.40 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=24.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 00367566662489999999885057885268
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
+||-|++|+|||+|...++....+...-+.|+
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVl 33 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVL 33 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 76258997878999999999999789837999
No 402
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.16 E-value=0.18 Score=28.52 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 5410036756666248999999988505788526876216
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE 188 (478)
++-+-|+|++|+|||.|+.-+++.. ....--++|.-+.+
T Consensus 38 ~~~l~i~G~~GsGKTHLl~a~~~~~-~~~~~~~~yl~~~~ 76 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAA-EERGKSAIYLPLAE 76 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HCCCCCEEEECHHH
T ss_conf 8869998999998899999999998-62699579952999
No 403
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=92.15 E-value=0.11 Score=29.84 Aligned_cols=180 Identities=18% Similarity=0.150 Sum_probs=86.1
Q ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHH---CCCC----CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 7021541003675666624899999998850---5788----52687621643459999998542442001222344433
Q gi|254780615|r 145 PYQKGGKIGLFGGAGVGKTVLIMELINNVAK---AHGG----YSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAV 217 (478)
Q Consensus 145 pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~---~~~~----v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~ 217 (478)
..-++.=..|-||+||||||....|+.-.++ ..+. |-+.|=-|.=+.-.+|.+..- .... .....+
T Consensus 238 ~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~----~~~L---~~~~~a 310 (753)
T TIGR01447 238 LALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKA----VKKL---AAENMA 310 (753)
T ss_pred HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH----HHHH---HHHCCC
T ss_conf 986087689987988977899999999999989864997404788668447999999999988----6322---342366
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHH-HHHHHHHHHH-C----CCCEEEEEE--------CHHHHHHHHHHHH---------
Q ss_conf 231699971766896787777777-8776899986-6----996799971--------5599987601245---------
Q gi|254780615|r 218 GSKCSLLYGQMNEPPGARSRVALT-GLTVAEHFRD-Q----GQDVLFFVD--------NIFRFTQANSEIS--------- 274 (478)
Q Consensus 218 ~~~tv~v~~~~~~~~~~r~~~~~~-a~tiAEyfrd-~----g~dVll~~D--------sltr~a~A~rEis--------- 274 (478)
.+..++..-.+...-.-|+....- . -+.||+ . -.|||++ | =|.+..+|.+.=.
T Consensus 311 id~~~~~~~~~~~~TiHrLLG~~~I~---~~~fr~h~~N~L~~DVLvv-DEaSMVdl~lm~kL~~A~~~~~k~~KLy~~~ 386 (753)
T TIGR01447 311 IDEDLIAALPSEATTIHRLLGIKPID---TKRFRHHERNPLPLDVLVV-DEASMVDLPLMAKLLKALPPNTKDKKLYADR 386 (753)
T ss_pred CCHHHHCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCEEEE-CCCHHCCHHHHHHHHHHCCCCCCCCCHHHCC
T ss_conf 58798548720456888861661478---7677677778898552787-0600226799999997226300132010102
Q ss_pred -HHHCC---CCHHHHCCHHHHHHHHHHHHHH----CCCCC----CCEEEEEEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf -53114---4101101223566657888763----17776----5325666543047664410589999750342
Q gi|254780615|r 275 -ALLGR---IPSAVGYQSTLALEMGELQERI----TTTLK----GSITSVQAIYVPADDLTDPAPATSFTHLDAT 337 (478)
Q Consensus 275 -l~~g~---~P~~~gYp~~~f~~~~~l~ERa----g~~~~----GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ 337 (478)
-++|- .|+-+ -|+|...+..+.+.. +.... --.+.+..+.-++-+..+|+.|+++-.-..|
T Consensus 387 LIllGD~nQL~sve--aG~Vl~~l~~~~~~g~~~y~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Sh 459 (753)
T TIGR01447 387 LILLGDKNQLPSVE--AGAVLGDLCELANEGESLYAAEKSALLAELLGEVAAVKKIASKTRNPLSDNVCMLKTSH 459 (753)
T ss_pred CCEECCCCCCCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 00122678888754--35557999999753750024548889998547889999853121152354476530122
No 404
>KOG0079 consensus
Probab=92.05 E-value=0.12 Score=29.75 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=57.9
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10036756666248999999988505788526876216434599999985424420012223444332316999717668
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
+.+|+|++|||||.|++-..-|. -...++.-.++.=+-|.| .-. +.+--..+.-++
T Consensus 10 kllIigDsgVGKssLl~rF~ddt--Fs~sYitTiGvDfkirTv-------------------~i~-G~~VkLqIwDtA-- 65 (198)
T KOG0079 10 KLLIIGDSGVGKSSLLLRFADDT--FSGSYITTIGVDFKIRTV-------------------DIN-GDRVKLQIWDTA-- 65 (198)
T ss_pred HHHEECCCCCCHHHHHHHHHHCC--CCCCEEEEEEEEEEEEEE-------------------ECC-CCEEEEEEEECC--
T ss_conf 88832687645789999985255--565148875335799986-------------------048-868999986140--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 96787777777877689998669967999715599987601245531144101101223566657888763177765325
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT 310 (478)
--+|++... .-|+ .|-|+++++-|+|. +.-|.-..+-+|.+-+.-.
T Consensus 66 -GqErFrtit-----styy--rgthgv~vVYDVTn----------------------~ESF~Nv~rWLeei~~ncd---- 111 (198)
T KOG0079 66 -GQERFRTIT-----STYY--RGTHGVIVVYDVTN----------------------GESFNNVKRWLEEIRNNCD---- 111 (198)
T ss_pred -CHHHHHHHH-----HHHC--CCCCEEEEEEECCC----------------------HHHHHHHHHHHHHHHHCCC----
T ss_conf -579999998-----8770--38866999997766----------------------3656759999999985496----
Q ss_pred EEEEEEECC
Q ss_conf 666543047
Q gi|254780615|r 311 SVQAIYVPA 319 (478)
Q Consensus 311 ~~~tV~~~~ 319 (478)
+++-|+|-.
T Consensus 112 sv~~vLVGN 120 (198)
T KOG0079 112 SVPKVLVGN 120 (198)
T ss_pred CCCCEECCC
T ss_conf 435221046
No 405
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.02 E-value=0.2 Score=28.17 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=16.9
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 003675666624899999998
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n 172 (478)
+||-||+|+||||++..+...
T Consensus 2 IGIaG~sgSGKST~a~~l~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 897889987799999999998
No 406
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.02 E-value=0.093 Score=30.40 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.2
Q ss_pred CCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 311002-3557021541003675666624899999998
Q gi|254780615|r 136 GIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 136 GIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+-+++| .-+++-.|-=.-++|+||+||||++.||-+-
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred CCEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 73233222577659728999878997578799999605
No 407
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.00 E-value=0.21 Score=28.05 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=28.4
Q ss_pred CCCCCC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 023557-021541003675666624899999998850
Q gi|254780615|r 140 IDLISP-YQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 140 ID~l~p-ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
+..+.| .|+-+++||-|.+|+|||||...++.....
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~ 77 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE 77 (323)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 9997311799837873179988668899999999997
No 408
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.99 E-value=0.09 Score=30.50 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=27.7
Q ss_pred CCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 311002-355702154100367566662489999999
Q gi|254780615|r 136 GIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+.+|+| .=+.+.+|.-.||+|+.|.|||||+..+.-
T Consensus 12 ~~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~G 48 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9998723389988998999998999739999999967
No 409
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.98 E-value=0.17 Score=28.70 Aligned_cols=22 Identities=45% Similarity=0.850 Sum_probs=19.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHH
Q ss_conf 0036756666248999999988
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
+||-|++|+||||++..+....
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988999885999999999980
No 410
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=91.98 E-value=0.096 Score=30.32 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 00235570215410036756666248999999
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
....=+++-.|++..|.|+||.|||||+.-++
T Consensus 15 ~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIA 46 (231)
T COG3840 15 PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIA 46 (231)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 07888760678579997788865788999987
No 411
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.96 E-value=0.19 Score=28.35 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=33.2
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 1541003675666624899999998850578852687621643459999998542
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~ 202 (478)
++--+.++|++|||||.|+.-|.+... ..+--+.|+=+ .|++.++++
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~-------~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITA-------PDLLSKLKA 150 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH-------HHHHHHHHH
T ss_conf 588289989999879999999999999-83984999885-------999999999
No 412
>PRK07261 topology modulation protein; Provisional
Probab=91.96 E-value=0.1 Score=30.11 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=31.4
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 100367566662489999999885--05788526876216434599999985
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEM 200 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~--~~~~~v~V~~~iGER~rEv~e~~~e~ 200 (478)
|+.|+|.+|.|||||+..+..... .-|-| .+|-.=|-..+.-.||...+
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD-~l~w~p~w~~~~~~e~~~~~ 52 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHYNCPVLHLD-QLHFSSNWQERDDDDMIADI 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEC-CEEECCCCEECCHHHHHHHH
T ss_conf 8999889998689999999998797979702-27888999888899999999
No 413
>PRK07429 phosphoribulokinase; Provisional
Probab=91.91 E-value=0.18 Score=28.50 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=22.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0036756666248999999988505788526876
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
+||-||||+||||++..+.... ....++|+.+
T Consensus 11 IGIAGgSGSGKTTv~r~I~~~f--g~~~VtvI~~ 42 (331)
T PRK07429 11 IGVAGDSGCGKSTFLRRLADLF--GEELVTVICL 42 (331)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEC
T ss_conf 9985788778999999999983--8887799947
No 414
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=91.84 E-value=0.041 Score=32.72 Aligned_cols=32 Identities=41% Similarity=0.631 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 02355702154100367566662489999999
Q gi|254780615|r 140 IDLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 140 ID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
+|.|...-+|+...+.|.||||||+|+..+.-
T Consensus 152 ~~~L~~~l~~k~~v~~G~SGvGKSSLiN~L~~ 183 (287)
T cd01854 152 LDELREYLKGKTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 89999874798899988998888999987462
No 415
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=91.83 E-value=0.12 Score=29.68 Aligned_cols=75 Identities=20% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 54100367566662489999999885057885268762164345999999854244200122234443323169997176
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQM 228 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~ 228 (478)
|--+=+.||+|+|||+|++.+++.. +-=|+-.-|.- ||..+++.-...........++-|-=+-..
T Consensus 21 G~PvHl~GPaG~GKT~LA~hvA~~r-----~RPV~l~~Gd~---------eL~~~DLvG~~~g~~~~kv~DqfihnV~K~ 86 (265)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR-----DRPVVLINGDA---------ELTTSDLVGSYAGYTRKKVVDQFIHNVVKL 86 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC-----CCCEEEEECCC---------CCCCCCCCCCCCCCEEEEEEECCEEEEECC
T ss_conf 8866744788855689999999736-----89689986582---------326544231546752222320121113425
Q ss_pred CCCHHHHHH
Q ss_conf 689678777
Q gi|254780615|r 229 NEPPGARSR 237 (478)
Q Consensus 229 ~~~~~~r~~ 237 (478)
++..-.+|.
T Consensus 87 ~d~~~~~W~ 95 (265)
T TIGR02640 87 EDIVRQNWV 95 (265)
T ss_pred CCCCCCCCC
T ss_conf 122002667
No 416
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=91.79 E-value=0.094 Score=30.37 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.8
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+..++.+
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~ 22 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGG 22 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999839
No 417
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=91.75 E-value=0.15 Score=29.06 Aligned_cols=45 Identities=33% Similarity=0.589 Sum_probs=29.9
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCC-----------CEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 0036756666248999999988505788-----------526876216434599999985424
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGG-----------YSVFAGVGERTREGNDLYHEMIDS 203 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~-----------v~V~~~iGER~rEv~e~~~e~~~~ 203 (478)
+++.|++|||||=|+.-+ | .+++ |=-||||| ..=|+|+.+.-++.
T Consensus 95 VLLvGPPGTGKTLLAKAv----A-GEA~VPFF~iSGSdFVEMFVGVG--ASRVRDLFeqAK~n 150 (505)
T TIGR01241 95 VLLVGPPGTGKTLLAKAV----A-GEAGVPFFSISGSDFVEMFVGVG--ASRVRDLFEQAKKN 150 (505)
T ss_pred EEEECCCCCCHHHHHHHH----H-CCCCCCCEEECCCCEEECCCCCC--CEEHHHHHHHHHHH
T ss_conf 473178784246788752----0-25889624740761011120564--00014457999971
No 418
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.75 E-value=0.082 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
|.=+.+.+|.++||+|.-|.|||||+..|+.-
T Consensus 42 nVSFeV~kGE~vGIIG~NGAGKSTLLKiIaGI 73 (549)
T PRK13545 42 NISFEVPEGEIVGIVGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 72578648989999889999899999999689
No 419
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=91.71 E-value=0.1 Score=30.21 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=33.2
Q ss_pred CEEEEEECHHHHHHHHHHHHHH--HCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 6799971559998760124553--11441011012235666578887631777653256665430476644105899997
Q gi|254780615|r 255 DVLFFVDNIFRFTQANSEISAL--LGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFT 332 (478)
Q Consensus 255 dVll~~Dsltr~a~A~rEisl~--~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~s 332 (478)
++.+-+.+++. .+.+.+|+. -||.-+-.|-.++=-+.+.+++-..-+-..|+| +..+.+++.--|...+.
T Consensus 255 ~~~l~~~~ls~--~~l~~vs~~v~~GEi~gi~G~nGsGKsTL~~~l~Gl~~~~~G~v------~~~G~~i~~~~~~~~~~ 326 (501)
T PRK10762 255 EIRLKVDNLCG--PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV------TLDGHEVVTRSPQDGLA 326 (501)
T ss_pred CEEEEEEECCC--CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE------EECCEECCCCCHHHHHH
T ss_conf 64899863146--76563444766881899667888768899999818767777769------99999888779899986
Q ss_pred HCCCEEEEEHHHHHCCCCCCCCC
Q ss_conf 50342564115663188675322
Q gi|254780615|r 333 HLDATTVLSRQISEKGIYPAIDP 355 (478)
Q Consensus 333 i~Dg~ivLsr~la~~g~~PAId~ 355 (478)
-|--++..+-...+.+|.-.+
T Consensus 327 --~~i~~v~~dr~~~~l~~~~sv 347 (501)
T PRK10762 327 --NGIVYISEDRKRDGLVLGMSV 347 (501)
T ss_pred --CCCCEECHHHHHCCCCCCCCH
T ss_conf --178445123331476678809
No 420
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.65 E-value=0.097 Score=30.29 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.9
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 55702154100367566662489999999
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
-+++-+||.++|+|--|.|||+|+.|++-
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 78960796799982699747589999835
No 421
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.65 E-value=0.069 Score=31.25 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=29.1
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 110023-55702154100367566662489999999885
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
..++|. =+.+.+|.-.|+.|+.|.|||||+.+++-...
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~ 56 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 788860499982895999989999989999999967977
No 422
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.65 E-value=0.12 Score=29.73 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
|.-+.+..|+-+-+.|+||||||||+.-++-
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred CCCEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 3550235897899976888657889999862
No 423
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.61 E-value=0.091 Score=30.47 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHH
Q ss_conf 1002355702154100367566662489999999885057885-268762164345
Q gi|254780615|r 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGERTRE 192 (478)
Q Consensus 138 kaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v-~V~~~iGER~rE 192 (478)
.+-|.=+.|.+|++.|.+|.-|.||||.+.|+.--. +..++. .|-+.+=.|-||
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~Pf~~~~ 93 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDPFRRRE 93 (325)
T ss_pred HHHEEEEECCCCCEEEEECCCCCCCHHHHHHHHCCC-CCCCCEEEECCCCCCHHHH
T ss_conf 655114534898689887588886033398973860-3688758745868523379
No 424
>KOG0731 consensus
Probab=91.60 E-value=0.24 Score=27.68 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=50.5
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 02154100367566662489999999885057885268762164345999999854244200122234443323169997
Q gi|254780615|r 146 YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLY 225 (478)
Q Consensus 146 ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~ 225 (478)
|-|| ++|.|++|||||-|+.-++ .+++|-.|...| .||++-+..-+-....+-+..+-...-++++.
T Consensus 343 iPkG--vLL~GPPGTGKTLLAKAiA-----GEAgVPF~svSG------SEFvE~~~g~~asrvr~lf~~ar~~aP~iifi 409 (774)
T KOG0731 343 IPKG--VLLVGPPGTGKTLLAKAIA-----GEAGVPFFSVSG------SEFVEMFVGVGASRVRDLFPLARKNAPSIIFI 409 (774)
T ss_pred CCCC--EEEECCCCCCHHHHHHHHH-----CCCCCCEEEECH------HHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7675--1787899986789999885-----305896464133------78888760343488899998743269807971
Q ss_pred ECCCCCHHHHH------HHHHHHHHHHHHHH--H---CCCCEEEE
Q ss_conf 17668967877------77777877689998--6---69967999
Q gi|254780615|r 226 GQMNEPPGARS------RVALTGLTVAEHFR--D---QGQDVLFF 259 (478)
Q Consensus 226 ~~~~~~~~~r~------~~~~~a~tiAEyfr--d---~g~dVll~ 259 (478)
..-|.....|- .-.....|+..+.- | ..++|+++
T Consensus 410 deida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731 410 DEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 454200312556666788807888999887875277677847998
No 425
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.60 E-value=0.64 Score=24.90 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=48.5
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 003675666624899999998850578852687621643-4599999985424420012223444332316999717668
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT-REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~-rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
++|.||+..|||..+-.++.+ ...-.+|++-++-. .|+.+=+...++.. . ..-.++ .+
T Consensus 2 iLVtGG~rSGKS~~AE~la~~----~~~~~~YiAT~~~~D~Em~~RI~~Hr~~R---------~---~~w~Ti-----E~ 60 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKRR---------P---AHWRTI-----ET 60 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHH----CCCCCEEEECCCCCCHHHHHHHHHHHHCC---------C---CCCEEE-----EC
T ss_conf 899778663689999999984----59981999788988989999999999668---------9---996699-----63
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 9678777777787768999866996799971559998760
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAN 270 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~ 270 (478)
| ..+++.++...++-.+++|++|-|.-..
T Consensus 61 ~-----------~~l~~~l~~~~~~~~vLiDclt~wl~N~ 89 (169)
T cd00544 61 P-----------RDLVSALKELDPGDVVLIDCLTLWVTNL 89 (169)
T ss_pred C-----------CCHHHHHHHCCCCCEEEEECHHHHHHHH
T ss_conf 4-----------4399999855988859986078999998
No 426
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.50 E-value=1 Score=23.63 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=26.6
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCC----------CEEEEEECCCHH
Q ss_conf 036756666248999999988505788----------526876216434
Q gi|254780615|r 153 GLFGGAGVGKTVLIMELINNVAKAHGG----------YSVFAGVGERTR 191 (478)
Q Consensus 153 gIfgg~GvGKT~l~~~~i~n~~~~~~~----------v~V~~~iGER~r 191 (478)
.|.|++|+|||.|+.+++..++....- -.|.-..+|=++
T Consensus 5 ~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~ 53 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCH
T ss_conf 9980899888999999999997599656898546877619999788998
No 427
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.50 E-value=0.99 Score=23.67 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 44410000134200023110023557021541003675666624899999998850578852687621643459999998
Q gi|254780615|r 120 SPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 199 (478)
Q Consensus 120 ~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e 199 (478)
+++...|......|+- ...+.=+.|-|++|-||||++.+-+.. +.. +...-+.+..++...|+.-
T Consensus 13 ~~~~v~R~rL~~~L~~----------~~~~~l~lv~APaG~GKTtl~a~w~~~----~~~-~~Wlsld~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LDHTVVRERLLAKLSG----------ANNYRLVLVRSPAGYGKTTLASQWAAG----KNN-VGWYSLDESDNQPERFASY 77 (903)
T ss_pred CCCCCCCHHHHHHHHH----------HCCCCEEEEECCCCCCHHHHHHHHHHC----CCC-EEEEECCCCCCCHHHHHHH
T ss_conf 8782554779999985----------158997999779998899999999834----998-5998588544899999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH--HHHHHHHHHH
Q ss_conf 54244200122234443323169997176689678777777787768999866996799971559998--7601245531
Q gi|254780615|r 200 MIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT--QANSEISALL 277 (478)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a--~A~rEisl~~ 277 (478)
+...--.. ..+.....-......+.++.... . ..+..-..+.+..+.+++||.-+.. ....-+.-++
T Consensus 78 l~~al~~~------~~~~~~~~~~~~~~~~~~~~~~~---~--~~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll 146 (903)
T PRK04841 78 LIAALQQA------TNGHCSKSEALAEKRQYASLTSL---F--AQLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFL 146 (903)
T ss_pred HHHHHHHH------CCCCCCHHHHCCCCCCCCCHHHH---H--HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99999985------65433112311355665549999---9--9999997558998699986836488868999999999
Q ss_pred CCCC
Q ss_conf 1441
Q gi|254780615|r 278 GRIP 281 (478)
Q Consensus 278 g~~P 281 (478)
...|
T Consensus 147 ~~~p 150 (903)
T PRK04841 147 RHQP 150 (903)
T ss_pred HHCC
T ss_conf 8389
No 428
>PRK06217 hypothetical protein; Validated
Probab=91.49 E-value=0.13 Score=29.47 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 410036756666248999999988
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
+|+.|+|.+|+|||||...+....
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l 25 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEAL 25 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 679997899887899999999975
No 429
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=91.49 E-value=0.095 Score=30.35 Aligned_cols=28 Identities=29% Similarity=0.518 Sum_probs=22.8
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2154100367566662489999999885
Q gi|254780615|r 147 QKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
--|-=+.|.|+||.||||||.-++....
T Consensus 56 ~~GeLlA~mGsSGAGKTTLmn~La~R~~ 83 (671)
T TIGR00955 56 KPGELLAIMGSSGAGKTTLMNALAFRSP 83 (671)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 0670689847876626899999853374
No 430
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=91.45 E-value=0.23 Score=27.81 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=27.9
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 4100367566662489999999885057885268762164345
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 192 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rE 192 (478)
+-..|+|+.|.|||||+..++...++. .+.-||+.==-||-|
T Consensus 442 GHtlI~GpTGsGKTvll~~l~~q~~ry-~~~~vf~FDkd~s~~ 483 (815)
T PRK13873 442 GHTLVVGPTGAGKSVLLALMALQFRRY-PGSQVFAFDFGGSIR 483 (815)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCHH
T ss_conf 643897889998999999999998644-898489997898789
No 431
>KOG0055 consensus
Probab=91.43 E-value=0.15 Score=29.13 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q ss_conf 3765588787
Q gi|254780615|r 89 ATLGRIMNVI 98 (478)
Q Consensus 89 ~lLGRViD~l 98 (478)
.||-|.+||.
T Consensus 397 ~LL~RfydP~ 406 (1228)
T KOG0055 397 QLLARFYDPT 406 (1228)
T ss_pred HHHHHHCCCC
T ss_conf 9999726887
No 432
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.38 E-value=0.12 Score=29.65 Aligned_cols=48 Identities=29% Similarity=0.508 Sum_probs=25.4
Q ss_pred CCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1100235-570215410036756666248999999988505788526876
Q gi|254780615|r 137 IKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 137 IkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
++|+|.. +-+-+|...||.|.||+|||||+-.+..- ..-.++.++|.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL-~~P~~G~i~~~g 352 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL-LPPSSGSIIFDG 352 (539)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEEEC
T ss_conf 0123012457638878999889999989999999487-788884499927
No 433
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.33 E-value=0.08 Score=30.83 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=54.1
Q ss_pred CCEEEEEECHHH-HHHHHHHHHHHH--CCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 967999715599-987601245531--14410110122356665788876317776532566654304766441058999
Q gi|254780615|r 254 QDVLFFVDNIFR-FTQANSEISALL--GRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATS 330 (478)
Q Consensus 254 ~dVll~~Dsltr-~a~A~rEisl~~--g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~ 330 (478)
..+++-+.+++. ...+.+.||+.+ ||.-+--|-.++=-+.+.+++-..-+...|+| +..|.|++.--|...
T Consensus 262 ~~~~l~v~~l~~~~~~~l~~vsf~v~~GEi~gl~G~nGsGKsTL~~~l~Gl~~~~~G~I------~~~G~~i~~~~~~~~ 335 (510)
T PRK09700 262 HETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI------RLNGKDISPRSPLDA 335 (510)
T ss_pred CCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE------EECCEECCCCCHHHH
T ss_conf 87179994652578886543357874881899976888628899999819888886189------999999998998999
Q ss_pred HHHCCCEEEEEHHHHHCCCCCCCCCCC
Q ss_conf 975034256411566318867532235
Q gi|254780615|r 331 FTHLDATTVLSRQISEKGIYPAIDPLD 357 (478)
Q Consensus 331 ~si~Dg~ivLsr~la~~g~~PAId~~~ 357 (478)
.. -|.-++..+-...+.||...+..
T Consensus 336 ~~--~gi~~v~~~r~~~~l~~~~sv~e 360 (510)
T PRK09700 336 VK--KGMAYITESRRDNGFFPNFSIAQ 360 (510)
T ss_pred HH--CCCEEEEEEHHHCCCCCCCCHHH
T ss_conf 97--08677531033247488996899
No 434
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=91.30 E-value=0.12 Score=29.68 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=26.9
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 5702154100367566662489999999885057885268
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
+.+-.|+=+++.||||.|||||+--++ ..-+.+.+-+.+
T Consensus 21 l~v~~G~lvaLLGPSGSGKsTLLR~iA-GLe~pd~G~I~~ 59 (241)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRVIA-GLEQPDSGRIIL 59 (241)
T ss_pred EEECCCEEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEE
T ss_conf 574385279854689873789999983-579998426998
No 435
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=91.29 E-value=0.29 Score=27.15 Aligned_cols=54 Identities=26% Similarity=0.307 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEE
Q ss_conf 20002311002355702-15410036756666248999999988505788-52687
Q gi|254780615|r 131 SILTTGIKVIDLISPYQ-KGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFA 184 (478)
Q Consensus 131 e~L~TGIkaID~l~pig-~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~-v~V~~ 184 (478)
.=+.||...+|.++.=- +|.=+.+=|.+|+|||+++..++.|.+....- +-+|.
T Consensus 177 ~Gi~tgf~~LD~~t~G~~~~dLiilAaRP~mGKTafalnia~n~a~~~~~~v~iFS 232 (435)
T COG0305 177 IGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFS 232 (435)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 51446834567773377467779971689997589999999999985589759998
No 436
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.16 Score=28.93 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=35.3
Q ss_pred CCCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2311002-35570215410036756666248999999988505788526876
Q gi|254780615|r 135 TGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 135 TGIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
+.+.++| .=+.+-+|+..||+|-||.|||||+- +++...+-..+-..+.+
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR-~iN~Le~PtsG~v~v~G 67 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLR-LINLLERPTSGSVFVDG 67 (339)
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECC
T ss_conf 7515651406887388689997488886788999-98565799886499868
No 437
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=91.18 E-value=0.22 Score=27.90 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=24.3
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 41003675666624899999998850578
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINNVAKAHG 178 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n~~~~~~ 178 (478)
+-..|+|+.|.|||||+..++-..++.++
T Consensus 447 GHtlI~G~TGsGKTtl~~fL~aq~~ky~~ 475 (800)
T PRK13898 447 GHTLIIGPTGAGKTVLMNFLCAQAMKFSP 475 (800)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 75699899999899999999999875488
No 438
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=91.13 E-value=0.12 Score=29.67 Aligned_cols=35 Identities=29% Similarity=0.577 Sum_probs=27.2
Q ss_pred CCCCCCCC-CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 31100235-570215410036756666248999999
Q gi|254780615|r 136 GIKVIDLI-SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 136 GIkaID~l-~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
|.+|++++ +-+.+|...+|+|.-|+|||||+..+.
T Consensus 4 ~~~vL~gln~~~~~G~~~aLlG~NGaGKsTLl~~Ln 39 (190)
T TIGR01166 4 GPEVLKGLNFAVERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred CCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 752035423022057168987289985789988743
No 439
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.09 E-value=0.23 Score=27.86 Aligned_cols=24 Identities=42% Similarity=0.702 Sum_probs=20.2
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 100367566662489999999885
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
=+||-||||+||||++.++.....
T Consensus 10 iIgIaG~SgSGKTTv~~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999867987788999999999828
No 440
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.09 E-value=0.13 Score=29.52 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 235570215410036756666248999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
|.-+.+.+|++.+|+|..|+|||||+..+.
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 533898789899998899988999999953
No 441
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.06 E-value=0.5 Score=25.62 Aligned_cols=56 Identities=29% Similarity=0.420 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 0235570215410036756666248999999988505788526876216434599999985424
Q gi|254780615|r 140 IDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDS 203 (478)
Q Consensus 140 ID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~ 203 (478)
++...|=..++-..|.|+.|||||-|+.-+++..++. +--++|+- +-+|+.+++.+
T Consensus 148 ~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~-g~~v~~v~-------~p~~~~~lK~s 203 (306)
T PRK08939 148 LEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKK-GVSSTLVH-------FPEFIRELKNA 203 (306)
T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEE-------HHHHHHHHHHH
T ss_conf 9973769888778898999998999999999999986-99299987-------59999999998
No 442
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=91.05 E-value=0.051 Score=32.14 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 00235570215410036756666248999999
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
.+|.|...-+|+..-+.|.||||||+|+..+.
T Consensus 154 g~~~L~~~l~~k~sv~~G~SGVGKSSLiN~L~ 185 (298)
T PRK00098 154 GLDELKPLLAGKVTVLAGQSGVGKSTLLNALV 185 (298)
T ss_pred CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 99999998579869998789887888887607
No 443
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=91.04 E-value=0.05 Score=32.16 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 0235570215410036756666248999999
Q gi|254780615|r 140 IDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 140 ID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+|.|.+.-+|+...+.|.||||||+|+..+.
T Consensus 198 l~~L~~~L~~ktsvf~GqSGVGKSSLiN~L~ 228 (344)
T PRK12288 198 LEPLEAALTGRISIFVGQSGVGKSSLINALL 228 (344)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHCC
T ss_conf 9999998767859998068767888876107
No 444
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.98 E-value=0.099 Score=30.23 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=6.1
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 699889999999999
Q gi|254780615|r 400 ELSEEDKLVVARARK 414 (478)
Q Consensus 400 ~l~~~~~~~i~r~~~ 414 (478)
+||--.++-+..++.
T Consensus 396 ~LSGGq~QRvaiAra 410 (501)
T PRK11288 396 NLSGGNQQKAILGRW 410 (501)
T ss_pred HCCHHHHHHHHHHHH
T ss_conf 289999999999999
No 445
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=90.97 E-value=0.47 Score=25.78 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=48.8
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 10036756666248999999988505788526876216434599999985424420012223444332316999717668
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
|+.+.|..|+|||+|+..+..+ . -...+.-+|.-- + .... -.....+. |-
T Consensus 2 KililG~~~sGKTsll~~l~~~----~-~~~~~pT~g~~~-------~------------~~~~---~~~~l~iw---D~ 51 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG----E-IVTTIPTIGFNV-------E------------TVEY---KNISFTVW---DV 51 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHCC----C-CCCCCCCCCCCE-------E------------EEEE---CCEEEEEE---EC
T ss_conf 9999999999989999999729----9-677589687017-------9------------9998---98999999---78
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECH--HHHHHHHHHHHHHHCCCC
Q ss_conf 967877777778776899986699679997155--999876012455311441
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNI--FRFTQANSEISALLGRIP 281 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsl--tr~a~A~rEisl~~g~~P 281 (478)
+-..|+|. -...||++ -.-+++++|+. .|+..|..++--++.+++
T Consensus 52 ~G~~~~r~-----l~~~Y~~~-a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~ 98 (159)
T cd04150 52 GGQDKIRP-----LWRHYFQN-TQGLIFVVDSNDRERIGEAREELQRMLNEDE 98 (159)
T ss_pred CCCCCCCH-----HHHHHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCHH
T ss_conf 99721465-----67864768-7389999977777899999999999962353
No 446
>PRK05480 uridine kinase; Provisional
Probab=90.96 E-value=0.26 Score=27.47 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=19.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHH
Q ss_conf 0036756666248999999988
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
+||-|+||+|||+++..+....
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l 30 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999778999999999980
No 447
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=90.92 E-value=0.12 Score=29.59 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 41003675666624899999998
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+|+.++|++|||||+|+...+.|
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~ 23 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRG 23 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999997997699999999709
No 448
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.90 E-value=0.14 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCC--CEEECCCCC
Q ss_conf 699889999999999999834997--110000578
Q gi|254780615|r 400 ELSEEDKLVVARARKLERFMSQPF--HVAESFTGL 432 (478)
Q Consensus 400 ~l~~~~~~~i~r~~~i~~fL~Qp~--~~~e~ft~~ 432 (478)
+||--.++-+..++.+ ..+|- ...|.++|.
T Consensus 405 ~LSGGq~QRv~iAraL---~~~P~iLilDEPT~GL 436 (513)
T PRK13549 405 RLSGGNQQKAILAKCL---LLNPRILILDEPTRGI 436 (513)
T ss_pred CCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCC
T ss_conf 3999999999999999---7199899997986689
No 449
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=90.89 E-value=0.13 Score=29.47 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 41003675666624899999998
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=|+.++|++|||||+|+...+.|
T Consensus 4 ~KivlvGd~~VGKTsli~r~~~~ 26 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTN 26 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999999998999999999729
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=90.89 E-value=0.26 Score=27.44 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 4100367566662489999999885057885268762164345999999
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 198 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~ 198 (478)
+-..|+|+.|.|||||+..++...+|. ....||+.= |+|-..-++.
T Consensus 457 GHtlIiGpTGsGKTvll~fl~aq~~ky-~~~~vf~FD--Kd~s~~i~~~ 502 (818)
T PRK13830 457 GHTLIFGPTGSGKSTLLALIAAQFRRY-AGAQIFAFD--KGRSMLPLTL 502 (818)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEC--CCCCHHHHHH
T ss_conf 505898999998899999999998642-798389974--8876899999
No 451
>KOG1707 consensus
Probab=90.82 E-value=1.2 Score=23.20 Aligned_cols=21 Identities=57% Similarity=0.898 Sum_probs=11.6
Q ss_pred CEECCCCCCCCHHHHHHHHHH
Q ss_conf 100367566662489999999
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~ 171 (478)
|+.|.|+.|||||.|.+.++.
T Consensus 11 RIvliGD~G~GKtSLImSL~~ 31 (625)
T KOG1707 11 RIVLIGDEGVGKTSLIMSLLE 31 (625)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999977888668999999876
No 452
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=90.82 E-value=0.34 Score=26.75 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.0
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4100367566662489999999885
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
--+||-|++|+||||++..++....
T Consensus 35 ~lIgIaG~pGSGKSTlA~~l~~~L~ 59 (230)
T PRK09270 35 TVVGIAGPPGAGKSTLAETLWEALS 59 (230)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989998899999999999986
No 453
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=90.70 E-value=0.078 Score=30.90 Aligned_cols=31 Identities=35% Similarity=0.773 Sum_probs=24.1
Q ss_pred CCCCCCCCC-CCCEECCCCCCCCHHHHHHHHH
Q ss_conf 023557021-5410036756666248999999
Q gi|254780615|r 140 IDLISPYQK-GGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 140 ID~l~pig~-Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+|.|-+..+ |+...+.|.||||||+|+.-+.
T Consensus 184 l~~L~~~l~~GkT~vl~G~SGVGKSTLiN~L~ 215 (353)
T PRK01889 184 VDALQAWLKPGKTVALLGSSGVGKSTLVNALL 215 (353)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 89999986349789997788866999998756
No 454
>KOG0743 consensus
Probab=90.69 E-value=0.62 Score=25.01 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=33.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 00367566662489999999885057885268762164-34599999985424420012223444332316999717668
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER-TREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER-~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~ 230 (478)
-+++|++|+|||+++.-|++-. +=|||..-+-.-+ ..|.+.++.. .-.+|++|.-.-|.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~dLr~LL~~-----------------t~~kSIivIEDIDc 297 (457)
T KOG0743 238 YLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSDLRHLLLA-----------------TPNKSILLIEDIDC 297 (457)
T ss_pred CEEECCCCCCHHHHHHHHHHHC---CCCEEEEEECCCCCCHHHHHHHHH-----------------CCCCCEEEEEECCC
T ss_conf 1204799998889999997205---873677440023683899999972-----------------89971899961243
Q ss_pred CHH
Q ss_conf 967
Q gi|254780615|r 231 PPG 233 (478)
Q Consensus 231 ~~~ 233 (478)
+.-
T Consensus 298 s~~ 300 (457)
T KOG0743 298 SFD 300 (457)
T ss_pred CCC
T ss_conf 230
No 455
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=90.69 E-value=0.15 Score=28.99 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=28.1
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 355702154100367566662489999999885
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
.-+||.+|--+-|+|+||+|||||+.-++-..+
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 547863784799877888657889999986206
No 456
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=90.65 E-value=1.1 Score=23.32 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 200023110023557021541003675666624899999998
Q gi|254780615|r 131 SILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 131 e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
+.|.-|-.|-| +++.|.+|+|||++...+...
T Consensus 45 ~~F~~G~pAnn----------vLLwG~RGtGKSSlVKall~~ 76 (248)
T pfam05673 45 EQFLAGLPANN----------VLLWGARGTGKSSLVKALLNE 76 (248)
T ss_pred HHHHCCCCCCC----------EEEECCCCCCHHHHHHHHHHH
T ss_conf 99980898613----------676768989888999999998
No 457
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=90.63 E-value=0.16 Score=28.91 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.4
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 55702154100367566662489999999
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
=+.+-+|-=+.++|-||||||||+.++.-
T Consensus 5 ~L~i~~GEFisliGHSGCGKSTLLNli~G 33 (230)
T TIGR01184 5 DLTIRQGEFISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 02552673699851278617899999850
No 458
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.60 E-value=0.31 Score=26.98 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 15410036756666248999999988505788526876216
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE 188 (478)
.-|-++|+|+.|+|||+.+..++.+......-++||=-=||
T Consensus 41 e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe 81 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGG 81 (410)
T ss_pred HHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 02747998899998899999999999986990999958854
No 459
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=90.58 E-value=0.15 Score=29.05 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.7
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.|
T Consensus 2 KivllGd~gVGKTsli~r~~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999995995889999999978
No 460
>KOG1433 consensus
Probab=90.56 E-value=1.1 Score=23.45 Aligned_cols=121 Identities=21% Similarity=0.173 Sum_probs=66.4
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EEC-CCHHHHHHHHHH
Q ss_conf 0000134200023110023557--021541003675666624899999998850578852687-621-643459999998
Q gi|254780615|r 124 TEQSTDASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVG-ERTREGNDLYHE 199 (478)
Q Consensus 124 ~~R~~i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iG-ER~rEv~e~~~e 199 (478)
+++..-.-.|.||.++.|-++- +.-|.=.-|+|++++|||.+...+.... ..-..-++|+ ..+ .+.....++-.+
T Consensus 84 ~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~-~gge~~~l~IDs~s~~~~~~~~~ia~~ 162 (326)
T KOG1433 84 LQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC-GGGEGKVLYIDTESTFRLERLTEIAGR 162 (326)
T ss_pred HHHHCCCEEECCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEEEECCHHCCCCHHHHHHHH
T ss_conf 9861676254155055667742675558356885589844778888998870-687511899952111033211356666
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH---HHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 5424420012223444332316999717668967877777---77877689998669967999715599
Q gi|254780615|r 200 MIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA---LTGLTVAEHFRDQGQDVLFFVDNIFR 265 (478)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~---~~a~tiAEyfrd~g~dVll~~Dsltr 265 (478)
... ..+. +.+.-...|.+-. ......|+-|..+.+.-++++||.|-
T Consensus 163 ~~~-------------~~~~-------~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta 211 (326)
T KOG1433 163 SGL-------------RGRD-------TLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATA 211 (326)
T ss_pred HHH-------------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 303-------------0677-------888889999985666777799999986203116999413454
No 461
>KOG0062 consensus
Probab=90.47 E-value=0.18 Score=28.54 Aligned_cols=31 Identities=29% Similarity=0.569 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
++=+++.+|-|-|+.|.-|+||||||-+|++
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred CCCEEEECCCCCCEECCCCCCHHHHHHHHHH
T ss_conf 7855563152432147898758999999984
No 462
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=90.46 E-value=0.34 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=20.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 367566662489999999885057885268
Q gi|254780615|r 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 154 Ifgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
++|++|+||||+...+..-....+-.+.|+
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vv 30 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVV 30 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 989898988999999999999779975999
No 463
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=90.43 E-value=0.16 Score=28.83 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 023110023557021541003675666624899999998850
Q gi|254780615|r 134 TTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 134 ~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
..||+-+| +-+.+|-=+.|+|.||+||||++.|+ ++.-.
T Consensus 6 ~~gVn~~~--l~i~~GEi~vi~GlSGsGKsT~vrml-NRLIE 44 (372)
T TIGR01186 6 KKGVNDAD--LEIAKGEIFVIMGLSGSGKSTLVRML-NRLIE 44 (372)
T ss_pred CCCCEECE--EEEECCEEEEEECCCCCCHHHHHHHH-HHCCC
T ss_conf 53200000--15525438999778998578999998-72257
No 464
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.42 E-value=0.33 Score=26.81 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=16.9
Q ss_pred CEECCCCCCCCHHHHHHHHHH
Q ss_conf 100367566662489999999
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~ 171 (478)
-+++||++|.|||||+.-+++
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 478647998768889999999
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=90.40 E-value=0.34 Score=26.68 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 54100367566662489999999885057885268762164345
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 192 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rE 192 (478)
=+-..|+|+.|.|||||+..++.+.++. .+..||+. -|+++
T Consensus 488 vGHTlIiGpTGaGKTvll~fL~aQ~~rY-~~~~vf~F--DK~~S 528 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHLGIIAAQLRRY-AGMSIYAF--DKGMS 528 (852)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEE--CCCCC
T ss_conf 6640787899998899999999997441-89818987--89852
No 466
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.39 E-value=0.89 Score=23.96 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=49.7
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 541003675666624899999998850578852687621643-4599999985424420012223444332316999717
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT-REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ 227 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~-rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~ 227 (478)
|--++|.||+..|||..+-+++.. ...-.+|++-++-. .|..+=+...++.. . ..-.++
T Consensus 1 gmi~LVtGG~rSGKS~~AE~la~~----~~~~~~YiAT~~~~D~Em~~RI~~Hr~~R---------~---~~w~Ti---- 60 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQ----SGLQVLYIATAQPLDDEMAARIAHHRQRR---------P---AHWQTV---- 60 (170)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH----CCCCEEEEECCCCCCHHHHHHHHHHHHCC---------C---CCCEEE----
T ss_conf 989999798763489999999985----69982999758888878999999999737---------8---995799----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEECHHHHHHHH
Q ss_conf 668967877777778776899986--6996799971559998760
Q gi|254780615|r 228 MNEPPGARSRVALTGLTVAEHFRD--QGQDVLFFVDNIFRFTQAN 270 (478)
Q Consensus 228 ~~~~~~~r~~~~~~a~tiAEyfrd--~g~dVll~~Dsltr~a~A~ 270 (478)
.+| ..+++.+.. ...++ +++|++|-|.-..
T Consensus 61 -E~p-----------~~l~~~l~~~~~~~~~-vLlDclt~wl~N~ 92 (170)
T PRK05800 61 -EEP-----------LDLAELLRADAAPGRC-VLVDCLTTWVTNL 92 (170)
T ss_pred -ECC-----------CCHHHHHHHHCCCCCE-EEEHHHHHHHHHH
T ss_conf -646-----------6789999874577886-8722678999998
No 467
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=90.35 E-value=0.19 Score=28.30 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 00235570215410036756666248999999988
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNV 173 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~ 173 (478)
|+-.+.+-.+|.=+++.|++|||||+|...++...
T Consensus 339 Av~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al 373 (784)
T PRK10787 339 AVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99986246778779964699877246999999985
No 468
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=90.34 E-value=0.14 Score=29.34 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=9.5
Q ss_pred CCCCCCCCEECCCCCCCCHHHHH
Q ss_conf 57021541003675666624899
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLI 166 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~ 166 (478)
+.+.+|+..+|.|.+|+|||||+
T Consensus 21 l~i~~Gei~~LvG~sGsGKSTL~ 43 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLM 43 (520)
T ss_pred EEECCCCEEEEECCCCCHHHHHH
T ss_conf 79999989999999996999999
No 469
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.29 E-value=0.19 Score=28.44 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 235570215410036756666248999999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
|.-+-|-.|+.+.++|+||.|||||+--|+
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 631550688689997789876788999985
No 470
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=90.29 E-value=0.28 Score=27.26 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=23.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 36756666248999999988505788526876
Q gi|254780615|r 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 (478)
Q Consensus 154 Ifgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~ 185 (478)
++|-+|.|||+|+-.++.+.+..+. ++|+.|
T Consensus 39 fmsspGSGKT~LiEk~~~~~~~~~K-~Avi~G 69 (225)
T TIGR00073 39 FMSSPGSGKTTLIEKLIERLDDEVK-IAVIEG 69 (225)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCC-EEEEEC
T ss_conf 0258861158999999998457897-899975
No 471
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.29 E-value=0.31 Score=26.97 Aligned_cols=57 Identities=26% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCCCCC-CCCEECCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEECCC
Q ss_conf 0023110023557021-54100367566662489999999885057--885268762164
Q gi|254780615|r 133 LTTGIKVIDLISPYQK-GGKIGLFGGAGVGKTVLIMELINNVAKAH--GGYSVFAGVGER 189 (478)
Q Consensus 133 L~TGIkaID~l~pig~-Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~--~~v~V~~~iGER 189 (478)
|..-|..-....+... +.-+.++|+.||||||.+.-++.+....+ ..|.++-.=-.|
T Consensus 177 L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyR 236 (282)
T TIGR03499 177 LENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYR 236 (282)
T ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 996477788765544567279997788875788999999999997389967999807776
No 472
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=90.28 E-value=0.18 Score=28.56 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHH--HHHHHCCCCCEEEE--EECCCHHHHHH
Q ss_conf 235570215410036756666248999999--98850578852687--62164345999
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELI--NNVAKAHGGYSVFA--GVGERTREGND 195 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i--~n~~~~~~~v~V~~--~iGER~rEv~e 195 (478)
|.=+.|-.|-=+.+-|+||+|||||+.=|- |.+ .++.+.|+. +.|=..++..+
T Consensus 23 di~L~i~~GEiViltGPSGSGKTTLLtLiG~LR~~--Q~G~L~vlg~~L~ga~~~~l~~ 79 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELKGASKKELVQ 79 (220)
T ss_pred CCCEEECCCEEEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEEECCHHCCCCHHHHHH
T ss_conf 76317717647984378898468899988762565--5560478220102678889999
No 473
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=90.26 E-value=1.3 Score=22.89 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=30.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 003675666624899999998850-578852687621643459999998542
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~-~~~~v~V~~~iGER~rEv~e~~~e~~~ 202 (478)
+.|=|++|+|||+++..+..-.+. ......+|.... +.++.-+++.+..
T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N--~~~~~~l~~~l~~ 53 (348)
T pfam09848 4 FLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGN--HPLVLVLYEALAG 53 (348)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC--HHHHHHHHHHHHH
T ss_conf 9997779938999999999998644026820899578--6699999999860
No 474
>KOG0054 consensus
Probab=90.25 E-value=0.17 Score=28.63 Aligned_cols=118 Identities=22% Similarity=0.328 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE---EECCCH-------HH--------HHHHH
Q ss_conf 3110023557021541003675666624899999998850578852687---621643-------45--------99999
Q gi|254780615|r 136 GIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA---GVGERT-------RE--------GNDLY 197 (478)
Q Consensus 136 GIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~---~iGER~-------rE--------v~e~~ 197 (478)
-++-|| +.+-+||..+|.|.-|+|||+|+..+.-.+.+.++.+.|-+ -+-|-+ || -.+.|
T Consensus 536 tL~dIn--~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ngTvreNILFG~~~d~~rY 613 (1381)
T KOG0054 536 TLKDIN--FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERY 613 (1381)
T ss_pred CCCCEE--EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCHHHCCCHHHHHCCCCCCCHHHH
T ss_conf 301415--896289889998999888899999996587556755998474898666556417856675006870359999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECH
Q ss_conf 985424420012223444332316999717668967877777778776899986699679997155
Q gi|254780615|r 198 HEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNI 263 (478)
Q Consensus 198 ~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsl 263 (478)
++..+.-- .......-...++|.+=---.+-+-+-|.|... |-|=| |..|+-|+=|=+
T Consensus 614 ~~Vi~aC~--L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL---ARAVY---~~adIYLLDDpl 671 (1381)
T KOG0054 614 DKVIKACA--LKKDLEILPFGDLTEIGERGINLSGGQKQRISL---ARAVY---QDADIYLLDDPL 671 (1381)
T ss_pred HHHHHHCC--CHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHH---HHHHH---CCCCEEEECCCC
T ss_conf 99999706--776797468987535778862776769999999---99986---579989887963
No 475
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=90.25 E-value=0.52 Score=25.47 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.|+| -|=.|+.++|..|+|||+|+..+..+
T Consensus 9 ~~~~-~k~~KililG~~~sGKTsil~~l~~~ 38 (174)
T cd04153 9 LFFP-RKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred HHCC-CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 7658-97799999989999889999999739
No 476
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=90.24 E-value=0.16 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.7
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.+.|++|||||.|+...+.|
T Consensus 3 KivlvGd~~VGKTsli~r~~~~ 24 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTN 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999899998699999999739
No 477
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=90.17 E-value=0.15 Score=29.04 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.8
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.|
T Consensus 6 KivvvGd~~VGKTsli~r~~~~ 27 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998889999999619
No 478
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=90.16 E-value=0.16 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.735 Sum_probs=19.5
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.|+|++|||||+|+..++.+
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999996996799999999619
No 479
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=90.14 E-value=0.16 Score=28.91 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.0
Q ss_pred CCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 41003675666624899999998
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.|+.++|++|||||+|+...+.+
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~ 23 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 97999997997899999999319
No 480
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=90.10 E-value=0.41 Score=26.18 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.0
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1003675666624899999998850
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAK 175 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~ 175 (478)
|+.|-|.+|+|||||+.-++...+.
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~ 25 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKS 25 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9899789998899999999999986
No 481
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.10 E-value=0.19 Score=28.43 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.6
Q ss_pred CCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 41003675666624899999998
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n 172 (478)
-|+.++|++|+|||+|+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999999889999999647
No 482
>PRK06696 uridine kinase; Validated
Probab=90.07 E-value=0.36 Score=26.51 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=23.9
Q ss_pred CCCCCCCCCC--CEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2355702154--100367566662489999999885
Q gi|254780615|r 141 DLISPYQKGG--KIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 141 D~l~pig~Gq--r~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
|-+..+..|+ ++||=|++|+|||||+.+++....
T Consensus 16 ~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~ 51 (227)
T PRK06696 16 NHILTLNLTRPLRVAIDGITASGKTTFANELAEEIK 51 (227)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999835999868999778998787999999999997
No 483
>PRK13409 putative ATPase RIL; Provisional
Probab=90.05 E-value=0.24 Score=27.76 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=14.8
Q ss_pred CCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 8788888977984898859237655887875230
Q gi|254780615|r 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPV 102 (478)
Q Consensus 69 I~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PL 102 (478)
.++|..+=..|.- -.|...+=+++-+.=.|=
T Consensus 96 p~~G~v~GLiG~N---GaGKST~lkILsG~l~Pn 126 (590)
T PRK13409 96 PKEGKVTGILGPN---GIGKSTAVKILSGELIPN 126 (590)
T ss_pred CCCCCEEEEECCC---CCCHHHHHHHHHCCCCCC
T ss_conf 9998789988999---998999999995871488
No 484
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=90.04 E-value=0.23 Score=27.83 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=19.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 00367566662489999999885
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
+||-|++|+||||++..+.....
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~ 24 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFG 24 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89989985719999999999966
No 485
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=89.97 E-value=0.6 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.4
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 541003675666624899999998
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
=-|+.++|..++|||+|+..+..+
T Consensus 9 ~~kililG~~~sGKTsil~~l~~~ 32 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLG 32 (168)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 889999999999989999999669
No 486
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=89.87 E-value=0.22 Score=27.96 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCHHHHHHHH
Q ss_conf 0023557021541003675666624899999
Q gi|254780615|r 139 VIDLISPYQKGGKIGLFGGAGVGKTVLIMEL 169 (478)
Q Consensus 139 aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~ 169 (478)
.=+.=+.+..|.+..|-|.+|+|||+|+--+
T Consensus 409 l~~l~~~v~~G~~llI~G~SG~GKTsLlRai 439 (604)
T COG4178 409 LSELNFEVRPGERLLITGESGAGKTSLLRAL 439 (604)
T ss_pred ECCCEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 1465265479987998789998788999999
No 487
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=89.82 E-value=0.18 Score=28.53 Aligned_cols=22 Identities=32% Similarity=0.739 Sum_probs=19.6
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.+
T Consensus 3 KivllGd~~VGKTsli~r~~~~ 24 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999899997899999999709
No 488
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=89.73 E-value=0.19 Score=28.37 Aligned_cols=22 Identities=50% Similarity=0.860 Sum_probs=19.6
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.+
T Consensus 2 Kiv~vGd~~VGKTsli~r~~~~ 23 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSE 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999998999999999849
No 489
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=89.70 E-value=0.17 Score=28.60 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.2
Q ss_pred CCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 41003675666624899999998
Q gi|254780615|r 150 GKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 150 qr~gIfgg~GvGKT~l~~~~i~n 172 (478)
.|+.++|++|||||+|+...+.+
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 09999998996699999999709
No 490
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=89.66 E-value=0.19 Score=28.38 Aligned_cols=22 Identities=32% Similarity=0.736 Sum_probs=19.5
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.+.|++|||||+|+...+.+
T Consensus 3 KivllGd~~VGKTsli~r~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999899998899999999719
No 491
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.62 E-value=0.3 Score=27.06 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 2355702154100367566662489999999885057885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v 180 (478)
|.-+.+-+|+=..|+|+-|.|||||+.++.|-..+..+.+
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i 58 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58 (252)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 6145415886368888998648889999998526678638
No 492
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=89.61 E-value=0.18 Score=28.49 Aligned_cols=20 Identities=10% Similarity=0.449 Sum_probs=11.1
Q ss_pred HHHCCCCEEEEEECHHHHHH
Q ss_conf 98669967999715599987
Q gi|254780615|r 249 FRDQGQDVLFFVDNIFRFTQ 268 (478)
Q Consensus 249 frd~g~dVll~~Dsltr~a~ 268 (478)
++++|+-++++-.++.....
T Consensus 187 l~~~g~til~isH~l~~~~~ 206 (501)
T PRK10762 187 LKSQGRGIVYISHRMKEIFE 206 (501)
T ss_pred HHHCCCCEEEECCCHHHHHH
T ss_conf 77448414775142576642
No 493
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=89.59 E-value=0.2 Score=28.28 Aligned_cols=22 Identities=36% Similarity=0.853 Sum_probs=19.1
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.+
T Consensus 1 Kiv~vGd~~VGKTsli~rf~~~ 22 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK 22 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997789999999749
No 494
>COG1162 Predicted GTPases [General function prediction only]
Probab=89.53 E-value=0.096 Score=30.32 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=30.9
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 20002311---00235570215410036756666248999999
Q gi|254780615|r 131 SILTTGIK---VIDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 131 e~L~TGIk---aID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
+++.+..+ .++.+.+..+|...-+.|.||||||+|+.-+.
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~ 185 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALL 185 (301)
T ss_pred EEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 5999537676558999997558849998888776999887417
No 495
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=89.52 E-value=0.18 Score=28.56 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.4
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.+
T Consensus 2 Ki~llGd~~VGKTsli~r~~~~ 23 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999996699999999629
No 496
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=89.51 E-value=0.19 Score=28.32 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.7
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.+
T Consensus 3 KIvllGd~~VGKTsli~r~~~~ 24 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999899997599999999709
No 497
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.45 E-value=0.21 Score=28.15 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.6
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.+.|++|||||+|+...+.+
T Consensus 3 KvvlvGd~~VGKTsli~r~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999899998899999999839
No 498
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=89.44 E-value=0.2 Score=28.26 Aligned_cols=22 Identities=45% Similarity=0.589 Sum_probs=19.6
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.+
T Consensus 2 KvvlvGd~~VGKTsli~r~~~~ 23 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTN 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997889999999619
No 499
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=89.42 E-value=0.2 Score=28.22 Aligned_cols=22 Identities=41% Similarity=0.803 Sum_probs=19.7
Q ss_pred CEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1003675666624899999998
Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n 172 (478)
|+.++|++|||||+|+...+.+
T Consensus 3 KivlvGd~~VGKTsli~rf~~~ 24 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999899997799999999619
No 500
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=89.40 E-value=0.46 Score=25.88 Aligned_cols=35 Identities=37% Similarity=0.652 Sum_probs=0.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 003675666624899999998850578852687621
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 187 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iG 187 (478)
+-|+|+||.|||.++++++.+ -...+..+++.=+|
T Consensus 477 ~~I~g~SGsGKSf~~q~l~~~-~~~~G~~V~IID~G 511 (864)
T PRK13721 477 MAVCGTSGAGKTGLIQPLIRS-VLDSGGFAVVFDMG 511 (864)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHCCCEEEEEECC
T ss_conf 699828998689999999999-98579979999699
Done!