HHsearch alignment for GI: 254780615 and conserved domain: pfam00006
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=100.00 E-value=0 Score=544.08 Aligned_cols=212 Identities=42% Similarity=0.678 Sum_probs=204.2
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 23110023557021541003675666624899999998850578852687621643459999998542442001222344
Q gi|254780615|r 135 TGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNG 214 (478)
Q Consensus 135 TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~ 214 (478)
T Consensus 1 TGi~~ID~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~--~~~~~V~~~iGer~~ev~~~~~~~~~------------ 66 (213)
T pfam00006 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAK--ADVVEVYVLIGERGREVAEFIEELLG------------ 66 (213)
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHHHHC------------
T ss_conf 9840002016645788877878999988999999998566--18935998137777999999997521------------
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHH
Q ss_conf 43323169997176689678777777787768999866996799971559998760124553114410110122356665
Q gi|254780615|r 215 SAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEM 294 (478)
Q Consensus 215 ~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~ 294 (478)
T Consensus 67 ~~~~~~t~vv~~~~d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~ 146 (213)
T pfam00006 67 EGALKRTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDL 146 (213)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 37665069998468898789999999999999999976996899837805999998765001479985456391788887
Q ss_pred HHHHHHHCCCC-CCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 78887631777-6532566654304766441058999975034256411566318867532235543
Q gi|254780615|r 295 GELQERITTTL-KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360 (478)
Q Consensus 295 ~~l~ERag~~~-~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~S 360 (478)
T Consensus 147 ~~l~ERag~~~~~GSiT~l~tv~~~~~d~~dpi~~~~~~~~dg~ivLsr~la~~g~~PAId~~~S~S 213 (213)
T pfam00006 147 ARLLERAGKVEGGGSITALPTVLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213 (213)
T ss_pred HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCC
T ss_conf 9999875346888634788899804888675156765211355999968999679999728755789