HHsearch alignment for GI: 254780615 and conserved domain: pfam00154

>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.69  E-value=0.00013  Score=49.18  Aligned_cols=111  Identities=25%  Similarity=0.360  Sum_probs=75.0

Q ss_pred             CCCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             4200023110023557---0215410036756666248999999988505788526876216434599999985424420
Q gi|254780615|r  130 ASILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVN  206 (478)
Q Consensus       130 ~e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~  206 (478)
T Consensus        30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~-gg~~~~iD~-E~a~d-~~~a~~l---GV-  102 (322)
T pfam00154        30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDA-EHALD-PVYAKKL---GV-  102 (322)
T ss_pred             CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHHCC-HHHHHHC---CC-
T ss_conf             54461580899998758997787089998898777899999999999734-993899853-66059-8899980---98-


Q ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf             0122234443323169997176689678777777787768999866996799971559998
Q gi|254780615|r  207 IDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT  267 (478)
Q Consensus       207 ~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a  267 (478)
T Consensus       103 ----------D~~~--l~~~qpd--------~~Eqal~i~~~li~~~~~~liViDSvaal~  143 (322)
T pfam00154       103 ----------DIDN--LLVSQPD--------TGEQALEIADMLVRSGAVDLIVVDSVAALV  143 (322)
T ss_pred             ----------CHHH--EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf             ----------8025--3897788--------399999999998537997659982534567