HHsearch alignment for GI: 254780615 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.31 E-value=6.3e-06 Score=57.76 Aligned_cols=146 Identities=21% Similarity=0.148 Sum_probs=85.4
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 15410036756666248999999988505788526876216434599999985424420012223444332316999717
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ 227 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~ 227 (478)
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~--~~v~~~~~~~~~~~~~~~~~-----------------------~~~~~ 55 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-----------------------LIIVG 55 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCC--CCEEEEEHHHHHHHHHHHHH-----------------------HHHHC
T ss_conf 997899999997029999999998726689--96899875998988898765-----------------------30001
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 66896787777777877689998669967999715599987601245531144101101223566657888763177765
Q gi|254780615|r 228 MNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKG 307 (478)
Q Consensus 228 ~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~G 307 (478)
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 115 (148)
T smart00382 56 GKKASGSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE----------------LRLLLLLKSEK 115 (148)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH----------------HHHHCCCCCCC
T ss_conf 12210519999999999998449----98999827502147620799999999----------------99851765789
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 32566654304766441058999975034256411
Q gi|254780615|r 308 SITSVQAIYVPADDLTDPAPATSFTHLDATTVLSR 342 (478)
Q Consensus 308 SIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr 342 (478)
T Consensus 116 ~~~vi~~~n~----~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 116 NLTVILTTND----EKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred CEEEEEEECC----CCCCCHHHHCCCCCEEEEEEC
T ss_conf 9899995699----522498770744787999828