HHsearch alignment for GI: 254780615 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.31  E-value=6.3e-06  Score=57.76  Aligned_cols=146  Identities=21%  Similarity=0.148  Sum_probs=85.4

Q ss_pred             CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             15410036756666248999999988505788526876216434599999985424420012223444332316999717
Q gi|254780615|r  148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ  227 (478)
Q Consensus       148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~  227 (478)
T Consensus         1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~--~~v~~~~~~~~~~~~~~~~~-----------------------~~~~~   55 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-----------------------LIIVG   55 (148)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCC--CCEEEEEHHHHHHHHHHHHH-----------------------HHHHC
T ss_conf             997899999997029999999998726689--96899875998988898765-----------------------30001


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             66896787777777877689998669967999715599987601245531144101101223566657888763177765
Q gi|254780615|r  228 MNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKG  307 (478)
Q Consensus       228 ~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~G  307 (478)
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~  115 (148)
T smart00382       56 GKKASGSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE----------------LRLLLLLKSEK  115 (148)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH----------------HHHHCCCCCCC
T ss_conf             12210519999999999998449----98999827502147620799999999----------------99851765789


Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf             32566654304766441058999975034256411
Q gi|254780615|r  308 SITSVQAIYVPADDLTDPAPATSFTHLDATTVLSR  342 (478)
Q Consensus       308 SIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr  342 (478)
T Consensus       116 ~~~vi~~~n~----~~~~~~~~~~~~~~~~~~~~~  146 (148)
T smart00382      116 NLTVILTTND----EKDLGPALLRRRFDRRIVLLL  146 (148)
T ss_pred             CEEEEEEECC----CCCCCHHHHCCCCCEEEEEEC
T ss_conf             9899995699----522498770744787999828