RPSBLAST alignment for GI: 254780615 and conserved domain: TIGR00767

>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. Members of this family differ in the specificity of RNA binding. Length = 415

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 83/381 (21%), Positives = 144/381 (37%), Gaps = 85/381 (22%)

Query: 62  AMSRTDGLSRGDCVIDTGTQITVP-VGEA--TLGRIMNVIGEPVDDQGAIISSEKRAIHQ 118
           +  R   L  GD +   G QI  P  GE    L ++ +V G+  +         K  +  
Sbjct: 84  SQIRRFNLRTGDTI--EG-QIRSPKEGERYFALLKVESVNGDDPEK-------AKNRVLF 133

Query: 119 PS--PSYTEQ----STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172
            +  P Y  +     T    L+T  +V+DL +P  KG +  +      GKTVL+ ++   
Sbjct: 134 ENLTPLYPNERLRLETSTEDLST--RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA 191

Query: 173 VAKAHGG-YSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEP 231
           + + H     +   + ER  E  D    M         R   G  V S         +EP
Sbjct: 192 ITRNHPEVELIVLLIDERPEEVTD----MQ--------RSVKGEVVAS-------TFDEP 232

Query: 232 PGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLA 291
                +VA   +  A+   +  +DV+  +D+I R  +A + ++   G++ S  G  +  A
Sbjct: 233 ASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSG-GVDAN-A 290

Query: 292 L-------------EMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHL-DAT 337
           L             E G           GS+T +    +      D      F    +  
Sbjct: 291 LHRPKRFFGAARNIEEG-----------GSLTIIATALIDTGSRMDEVIFEEFKGTGNME 339

Query: 338 TVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397
             L R+++++ I+PAID   S +   E+ ++  E           LQ+   L+ II+   
Sbjct: 340 LHLDRKLADRRIFPAIDIKKSGTRKEEL-LLTPEE----------LQKIWVLRKIIS--P 386

Query: 398 MDELSEEDKLVVARARKLERF 418
           MD +   + L+     KL++ 
Sbjct: 387 MDSIEAMEFLI----SKLKKT 403