RPSBLAST alignment for GI: 254780615 and conserved domain: TIGR00962
>gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. Length = 501
Score = 104 bits (261), Expect = 6e-23
Identities = 113/438 (25%), Positives = 181/438 (41%), Gaps = 64/438 (14%)
Query: 49 VVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAI 108
+ +L E +V + M + G V TG + VPVG+ LGR++N +G+P+D +G I
Sbjct: 61 IALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPI 120
Query: 109 ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIME 168
S E R I + +P E+ + L TGIK ID + P +G + + G GKT + ++
Sbjct: 121 DSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAID 180
Query: 169 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLL--YG 226
I N K Y V+ +G++ S V L +G
Sbjct: 181 TIIN-QKDSDVYCVYVAIGQK------------------------ASTVAQVVRKLEEHG 215
Query: 227 QM----------NEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276
M ++ + TG T+AE+FRD G+ L D++ + A +IS L
Sbjct: 216 AMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLL 275
Query: 277 LGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYVPADDLTDPAPATSFT 332
L R P Y + L ER GS+T++ I A D++ P +
Sbjct: 276 LRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVIS 335
Query: 333 HLDATTVLSRQISEKGIYPAIDPLDSNS---SMLEIDIVGQEHYDVARRVQEILQRYKSL 389
D L + GI PAI+ S S +I + Q VA ++ L +Y+ L
Sbjct: 336 ITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQ----VAGSLRLELAQYREL 391
Query: 390 QDIIAILGMDELSEEDKLVVARARKLERFMSQ----PFHVAE----SFTGLPG--KFVSL 439
+ + D L E K + R ++L + Q P V E + G G + +
Sbjct: 392 -EAFSQFASD-LDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPV 449
Query: 440 EETIRGFKGLVQGEYDHL 457
++ +R F+ Q D+L
Sbjct: 450 DK-VRKFE---QELLDYL 463