RPSBLAST alignment for GI: 254780615 and conserved domain: cd01135
>gnl|CDD|30001 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.. Length = 276
Score = 111 bits (278), Expect = 7e-25
Identities = 78/286 (27%), Positives = 126/286 (44%), Gaps = 20/286 (6%)
Query: 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVID 141
+ VPV E LGRI N G+P+D I++ E I+ P + + ++ TGI ID
Sbjct: 2 LKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAID 61
Query: 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS----VFAGVGERTREGNDLY 197
++ +G KI +F G+G+ L ++ A G VFA +G +
Sbjct: 62 GMNTLVRGQKIPIFSGSGLPHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFFK 120
Query: 198 HEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR-DQGQDV 256
+ + G+ + L N+P R LT AE+ ++G+ V
Sbjct: 121 DDF----------EETGAL--ERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHV 168
Query: 257 LFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER--ITTTLKGSITSVQA 314
L + ++ + +A EISA +P GY + ++ + ER GSIT +
Sbjct: 169 LVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPI 228
Query: 315 IYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360
+ +P DD+T P P + + VL RQ+ +GIYP I+ L S S
Sbjct: 229 LTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLS 274