RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (478 letters) >gnl|CDD|181752 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated. Length = 463 Score = 920 bits (2380), Expect = 0.0 Identities = 332/472 (70%), Positives = 391/472 (82%), Gaps = 15/472 (3%) Query: 8 ESVGRIQQIMGAVVDVVF-VNSLPPIFSSLETSD-KGSRIVFEVVQHLGEKTVRCIAMSR 65 + G+I Q++G VVDV F LP I+++LE G ++V EV QHLG+ VR IAM Sbjct: 1 MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGS 60 Query: 66 TDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTE 125 TDGL RG VIDTG I+VPVG+ATLGRI NV+GEP+D++G I + E+ IH+ +PS+ E Sbjct: 61 TDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEE 120 Query: 126 QSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 ST IL TGIKVIDL++PY KGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFAG Sbjct: 121 LSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG 180 Query: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 VGERTREGNDLYHEM +S V +D K +L++GQMNEPPGAR RVALTGLT+ Sbjct: 181 VGERTREGNDLYHEMKESGV-LD-----------KTALVFGQMNEPPGARLRVALTGLTM 228 Query: 246 AEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT 304 AE+FRD +GQDVL F+DNIFRFTQA SE+SALLGR+PSAVGYQ TLA EMG+LQERIT+T Sbjct: 229 AEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST 288 Query: 305 LKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLE 364 KGSITSVQA+YVPADDLTDPAPAT+F HLDATTVLSRQI+E GIYPA+DPLDS S +L+ Sbjct: 289 KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILD 348 Query: 365 IDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFH 424 IVG+EHYDVAR VQ+ILQRYK LQDIIAILGMDELSEEDKL VARARK++RF+SQPF Sbjct: 349 PLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFF 408 Query: 425 VAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAE 476 VAE FTG PGK+V L++TIRGFK +++GEYDHLPE AFYMVG+I+EA++KA+ Sbjct: 409 VAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAK 460 >gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. Length = 461 Score = 783 bits (2024), Expect = 0.0 Identities = 328/471 (69%), Positives = 387/471 (82%), Gaps = 15/471 (3%) Query: 9 SVGRIQQIMGAVVDVVFVNS-LPPIFSSLETS-DKGSRIVFEVVQHLGEKTVRCIAMSRT 66 + G++ Q++G VVDV F LP I+++L+ S + EV QHLG+ TVR IAM T Sbjct: 1 TKGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGST 60 Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126 DGL RG VIDTG I+VPVG+ TLGRI NV+GEP+D++G I + E+ IH+ +PS+ EQ Sbjct: 61 DGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQ 120 Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 ST IL TGIKVIDL++PY KGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFAGV Sbjct: 121 STKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGV 180 Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 GERTREGNDLYHEM +S V ID K +L+YGQMNEPPGAR RVALTGLT+A Sbjct: 181 GERTREGNDLYHEMKESGV-ID-----------KTALVYGQMNEPPGARMRVALTGLTMA 228 Query: 247 EHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305 E+FRD QGQDVL F+DNIFRFTQA SE+SALLGR+PSAVGYQ TLA EMGELQERIT+T Sbjct: 229 EYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTK 288 Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365 GSITSVQA+YVPADDLTDPAPAT+F HLDATTVLSR+I+E GIYPA+DPLDS S +L+ Sbjct: 289 TGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDP 348 Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHV 425 +VG+EHYDVAR VQ+ILQRYK LQDIIAILGMDELSEEDKL V RAR+++RF+SQPF V Sbjct: 349 SVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFV 408 Query: 426 AESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAE 476 AE FTG PGK+V L++TIRGFK +++G+YDHLPE AFYMVG+I+E V+KA+ Sbjct: 409 AEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFYMVGTIEEVVEKAK 459 >gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional. Length = 461 Score = 704 bits (1820), Expect = 0.0 Identities = 276/471 (58%), Positives = 341/471 (72%), Gaps = 14/471 (2%) Query: 8 ESVGRIQQIMGAVVDVVF-VNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRT 66 +GRI +I G VVDV F +LPPI +L D G + EV QHL E TVR IA+ T Sbjct: 1 MMIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGST 60 Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126 GL+RGD V +TG I VPVGEA LGR+++V+GEP+D + + E+R IH P EQ Sbjct: 61 SGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQ 120 Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 T IL TGIKVIDL+ P KGGK GLFGGAGVGKTVL+MELI N++K H G SVFAGV Sbjct: 121 DTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGV 180 Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 GER+REG++LYHEM +S V K ++YGQMNEPPGAR RV LTGLT+A Sbjct: 181 GERSREGHELYHEMKESGVL------------DKTVMVYGQMNEPPGARMRVVLTGLTIA 228 Query: 247 EHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305 E+ RD + +DVL F+DNIFRF QA SE+S LLGR+PS VGYQ TLA E+ ELQERI +T Sbjct: 229 EYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTK 288 Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365 GSITS+QA+YVPADDLTDPA F+HLD+T VLSR + KGIYPAIDPL S+S++L+ Sbjct: 289 NGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDP 348 Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHV 425 +VG+ HYD A V+ ILQRYK L+D+IAILG+DELS EDK++V RAR+L+RF++QPF V Sbjct: 349 LVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVKRARQLQRFLTQPFFV 408 Query: 426 AESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAE 476 E+FTG PG V LEET+ + ++ GEYD E +FYM+GS+D+ K E Sbjct: 409 TEAFTGEPGVSVPLEETLDSCERILNGEYDDWSEESFYMIGSLDDLRTKEE 459 >gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase. Length = 449 Score = 527 bits (1360), Expect = e-150 Identities = 230/462 (49%), Positives = 313/462 (67%), Gaps = 14/462 (3%) Query: 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLS 70 G + + G++VDV F LP I S L +G +V EV+ L VR IA++ T GL+ Sbjct: 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREG-EVVVEVLSQLDAHHVRGIALTPTQGLA 59 Query: 71 RGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDA 130 RG V D+G + PVG+ TL R+ +V G +D + E R++HQ P+ T +S+ + Sbjct: 60 RGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119 Query: 131 SILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190 + TGIK ID++ P ++GGK GLFGGAGVGKTVL+ E+I+N+ H G S+F G+GER Sbjct: 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERC 179 Query: 191 REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250 REG +LY EM ++ V N +++GQMNEPPGAR RV T LT+AE+FR Sbjct: 180 REGEELYREMKEAGV----LDNT--------VMVFGQMNEPPGARFRVGHTALTMAEYFR 227 Query: 251 D-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSI 309 D + QDVL +DNIFRF QA SE+S LLG++PS +GYQ TL E+ EL+ERI TT G+I Sbjct: 228 DDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAI 287 Query: 310 TSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVG 369 TS+QA+YVPADD TDPA +F+HL A+ VLSR+ + +G+YPAIDPL S S M IVG Sbjct: 288 TSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVG 347 Query: 370 QEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHVAESF 429 + HYD+AR V++ L +Y+ L+DIIA+LG+++LS ED+ VV RAR+LERF++QPF E F Sbjct: 348 ERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQPFFTTEQF 407 Query: 430 TGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEA 471 TG+ GK VSLE+ + G + ++ E+ PE YM+G IDEA Sbjct: 408 TGMKGKTVSLEDALDGCERILNDEFQDYPERDLYMIGKIDEA 449 >gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. Length = 440 Score = 211 bits (539), Expect = 3e-55 Identities = 134/434 (30%), Positives = 220/434 (50%), Gaps = 33/434 (7%) Query: 10 VGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGS--RIVFEVVQHLGEKTVRCIAMSRTD 67 VGR+ ++ G +++ V + +GS R+V EVV GE V + + Sbjct: 24 VGRVTKVKGLLIEAVGPQ--ASVGDLCLIERRGSEGRLVAEVVGFNGEF-VFLMPYEEVE 80 Query: 68 GLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIIS-SEKRAIHQPSPSYTEQ 126 G+ G V+ TG +++ VG+ LGR+++ +G+P+D +G + E + + ++ Sbjct: 81 GVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKR 140 Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 + IL+TG++ ID + KG +IG+F G+GVGK+ L + +I +A +V A + Sbjct: 141 APIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTL-LGMIARNTEAD--VNVIALI 197 Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 GER RE E I+ + + K + ++ ++ P R + A +A Sbjct: 198 GERGREVR----EFIEHDLGEEGLK--------RSVVVVATSDQSPLLRLKGAYVATAIA 245 Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK 306 E+FRDQG+DVL +D++ RF A EI G P+ GY ++ + L ER + K Sbjct: 246 EYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGK 305 Query: 307 GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEID 366 GSIT+ + V DD+ +P + LD VLSR ++++G YPAID L S S ++ Sbjct: 306 GSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMT-A 364 Query: 367 IVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMSQ- 421 IV +EH AR+ +E+L +YK +D+I I G D + +A+ KLERF+ Q Sbjct: 365 IVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDF---AIAKYPKLERFLKQG 421 Query: 422 ---PFHVAESFTGL 432 + ES L Sbjct: 422 INEKVNFEESLQQL 435 >gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 413 Score = 208 bits (532), Expect = 2e-54 Identities = 123/389 (31%), Positives = 200/389 (51%), Gaps = 26/389 (6%) Query: 11 GRIQQIMGAVVDV----VFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRT 66 G++ +++G ++ + L I + G ++ EVV E + + + Sbjct: 1 GKVTRVIGLTIESKGPKAKIGELCSILTK-----GGKPVLAEVVGFKEENVL-LMPLGEV 54 Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126 +G+ G VI TG + + VG+ LGR+++ +G P+D +G II E + P P+ ++ Sbjct: 55 EGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKR 114 Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 L TGIK ID + KG ++G+F G+GVGK+ L + +I AKA +V A + Sbjct: 115 PRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIARNAKA--DINVIALI 171 Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 GER RE D K+ G + ++ ++P R + A T +A Sbjct: 172 GERGREVRDFI------------EKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIA 219 Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK 306 E+FRDQG+DVL +D++ RF A EI +G P+ GY ++ + +L ER + K Sbjct: 220 EYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQK 279 Query: 307 GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEID 366 GSIT + V DD+ +P LD VLSR+++ K YPAID L S S ++ + Sbjct: 280 GSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMN-E 338 Query: 367 IVGQEHYDVARRVQEILQRYKSLQDIIAI 395 IV +EH ++A +++E+L YK +D+I I Sbjct: 339 IVSEEHKELAGKLRELLAVYKEAEDLINI 367 >gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 411 Score = 204 bits (521), Expect = 6e-53 Identities = 131/429 (30%), Positives = 220/429 (51%), Gaps = 33/429 (7%) Query: 11 GRIQQIMGAVVDVVFVNSLPPIFS--SLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDG 68 GR+ +++G V++ V + P+ S +E+SD G I EVV G++ + + + +G Sbjct: 1 GRVTRVVGLVLEAVGLR--APVGSRCEIESSD-GDPIEAEVVGFRGDRVL-LMPLEDVEG 56 Query: 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQST 128 L G V + +PVG++ LGR+++ +G P+D +G + + E+ ++ P + +++ Sbjct: 57 LRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAP 116 Query: 129 DASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188 L G++ I+ + +G ++G+F G+GVGK+ L + ++ +A V +GE Sbjct: 117 IDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTL-LGMMARYTEAD--VVVVGLIGE 173 Query: 189 RTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEH 248 R RE E I+ G ++ ++ +E P R R A +AE+ Sbjct: 174 RGRE----VKEFIE--------DILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEY 221 Query: 249 FRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQ-STLALEMGELQER--ITTTL 305 FRDQG+DVL +D++ RF A EI+ +G P+ GY S A + +L ER Sbjct: 222 FRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAK-LPQLVERAGNGEEG 280 Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365 KGSIT+ + V DD DP + LD VLSR+++E+G YPAID L S S + Sbjct: 281 KGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILAS-ISRVMP 339 Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMSQ 421 D+V EH ARR +++L RY+ +D+I+I G D ++ +A ++E F+ Q Sbjct: 340 DVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQ---AIALYPRIEAFLQQ 396 Query: 422 PFHVAESFT 430 SF Sbjct: 397 GMRERASFE 405 >gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase. Length = 422 Score = 194 bits (496), Expect = 3e-50 Identities = 128/450 (28%), Positives = 209/450 (46%), Gaps = 37/450 (8%) Query: 7 TESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRT 66 GR+ ++ G ++ V + + D + EVV G++ + + Sbjct: 3 VRVRGRVTEVSGTLLKAVLPGARVGELCLIRRRDPSQLLA-EVVGFTGDEAL-LSPLGEL 60 Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAI--ISSEKRAIHQPSPSYT 124 G+S G VI TG +++ VGEA LGR+++ G P+D +G + E R + P Sbjct: 61 HGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPM 120 Query: 125 EQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 + L TG++ ID + +G +IG+F GAGVGK+ L+ + A A +V A Sbjct: 121 SRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARG-ASAD--VNVIA 177 Query: 185 GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244 +GER RE E I+ + + RK + L+ + P R + A T Sbjct: 178 LIGERGREVR----EFIEHHLGEEGRK--------RSVLVVSTSDRPSLERLKAAYTATA 225 Query: 245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT 304 +AE+FRDQG+ VL +D++ RF +A EI G P+ GY ++ + L ER Sbjct: 226 IAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNG 285 Query: 305 LKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLE 364 KGSIT++ + V DD+ DP + LD VLSR ++E+ YPAID L S S ++ Sbjct: 286 EKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMS 345 Query: 365 IDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMS 420 +V EH A +++ +L YK ++ +I + G D +++ + + + F+ Sbjct: 346 -QVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDD---AIDKIDAIRAFLR 401 Query: 421 QPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 Q + EET+ LV Sbjct: 402 QSTDEYSPY----------EETLEQLHALV 421 >gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 418 Score = 191 bits (487), Expect = 4e-49 Identities = 119/403 (29%), Positives = 187/403 (46%), Gaps = 27/403 (6%) Query: 39 SDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVI 98 + G ++ EVV V + +G+ G V + V + LGR++N + Sbjct: 30 ARDGRPVLAEVVG-FNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINAL 88 Query: 99 GEPVDDQGAIISSEKR-AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGG 157 GEP+D +G + E+R + P ++ L TG++VID P +G ++G+F G Sbjct: 89 GEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAG 148 Query: 158 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND-LYHEMIDSKVNIDPRKNNGSA 216 +GVGK+ L+ L N V A VGER RE + L ++ G Sbjct: 149 SGVGKSTLLSMLARN---TDADVVVIALVGERGREVREFLEDDL-------------GEE 192 Query: 217 VGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276 + ++ +E P R + A T +AE+FRDQG+DVL +D++ RF A EI Sbjct: 193 GLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLA 252 Query: 277 LGRIPSAVGYQSTLALEMGELQER--ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHL 334 G P A GY ++ E+ L ER KGSIT + + V DD +P L Sbjct: 253 AGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGIL 312 Query: 335 DATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIA 394 D VL R I+E+G YPAI+ L S S L + E + RR++ +L RY+ +D+I Sbjct: 313 DGHIVLDRAIAERGRYPAINVLAS-VSRLAPRVWSPEERKLVRRLRALLARYEETEDLIR 371 Query: 395 ILGMDELSEED-KLVVARARKLERFMSQ----PFHVAESFTGL 432 + + S+ + + K+ F++Q P + + F L Sbjct: 372 LGAYRKGSDPELDEAIRLVPKIYEFLTQGPDEPTSLQDPFADL 414 >gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated. Length = 434 Score = 173 bits (440), Expect = 1e-43 Identities = 117/392 (29%), Positives = 193/392 (49%), Gaps = 39/392 (9%) Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126 +G GD V + + +PVG LGR+++ +G P+D +GAI I + + ++ Sbjct: 75 EGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKR 134 Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 + + G+K ID + KG K+G+F G+GVGK+ L M +I A V A + Sbjct: 135 GLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMIVKGCLAP--IKVVALI 191 Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 GER RE + + + + ++ ++ P R A ++VA Sbjct: 192 GERGREIPEFIEKNLGGDL-------------ENTVIVVATSDDSPLMRKYGAFCAMSVA 238 Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGY-QSTLALEMGELQERI-TTT 304 E+F++QG DVLF +D++ RF A EI LG P++ GY S L+L + +L ER Sbjct: 239 EYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSL-LPQLMERAGKEE 297 Query: 305 LKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLE 364 KGSIT+ + V DD++DP S + LD VLSR++++ GIYP I+ L+S S ++ Sbjct: 298 GKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMN 357 Query: 365 IDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMD-ELSEEDKLVVARARKLERFM 419 DI+ EH AR+ + + K + +I I G D EL E +++ +E+F+ Sbjct: 358 -DIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKELDE----AISKKEFMEQFL 412 Query: 420 SQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 Q P + E+T + +++ Sbjct: 413 KQN----------PNELFPFEQTFEQLEEILR 434 >gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional. Length = 439 Score = 166 bits (421), Expect = 2e-41 Identities = 129/452 (28%), Positives = 214/452 (47%), Gaps = 48/452 (10%) Query: 11 GRIQQIMG----AVVDVVFVNSLPPIFSSLETSDKGSRIVFEVV---QHLGEKTVRCIAM 63 GR+ Q+ G AVV V + L L D + EV+ QH T + Sbjct: 25 GRVTQVTGTILKAVVPGVRIGEL----CYLRNPDNSLSLQAEVIGFAQHQALLT----PL 76 Query: 64 SRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSY 123 G+S V TGT V VGE LGR+++ +G+P D + ++ +P+ Sbjct: 77 GEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAP 136 Query: 124 TEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 + + L+ G++VID + +G ++G+F AG GK+ L+ LI + A +V Sbjct: 137 MSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS---AEVDVTVL 193 Query: 184 AGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 A +GER RE E I+S + + + K L+ + P R++ Sbjct: 194 ALIGERGRE----VREFIESDLGEEGLR--------KAVLVVATSDRPSMERAKAGFVAT 241 Query: 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT 303 ++AE+FRDQG+ VL +D++ RF +A EI G P+ GY ++ + L ER Sbjct: 242 SIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ 301 Query: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363 + KGSIT++ + V DD+T+P + + LD +LSR+++ YPAID L S S ++ Sbjct: 302 SDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVM 361 Query: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFM 419 IV +EH A R++E+L +Y+ ++ ++ I G D+ +++ + R + F+ Sbjct: 362 N-QIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQ---AIERIGAIRGFL 417 Query: 420 SQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451 Q H F ET+ + L Q Sbjct: 418 RQGTHELSHF----------NETLNLLETLTQ 439 >gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated. Length = 440 Score = 164 bits (416), Expect = 6e-41 Identities = 116/415 (27%), Positives = 192/415 (46%), Gaps = 29/415 (6%) Query: 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLS 70 G I +I ++ SLP + + ++ EVV E + +DGL Sbjct: 31 GPIVEIGPTLLRA----SLPGVAQGELCRIEPQGMLAEVVSIEQE-MALLSPFASSDGLR 85 Query: 71 RGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDA 130 G V G V VG GRI++ +G P+D G ++ + R + P PS + Sbjct: 86 CGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWRELDCPPPSPLTRQPIE 144 Query: 131 SILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190 +LTTGI+ ID I +G +IG+F AGVGK+ L+ L A + V A +GER Sbjct: 145 QMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGML---CADSAADVMVLALIGERG 201 Query: 191 REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250 RE E ++ + + R V + + P R + T T+AE+FR Sbjct: 202 RE----VREFLEQVLTPEARARTVVVVATS--------DRPALERLKGLSTATTIAEYFR 249 Query: 251 DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 D+G+ VL D++ R+ +A EI G P+A + ++ + L ER + +GSIT Sbjct: 250 DRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSIT 309 Query: 311 SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQ 370 + + V DD+ +P + LD VLSR+++ G YPAID S S ++ IV Sbjct: 310 AFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMP-QIVSA 368 Query: 371 EHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMSQ 421 +A++++ +L Y+ ++ ++ + G D ++E + R + F+ Q Sbjct: 369 GQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADE---ALQRYPAICAFLQQ 420 >gnl|CDD|181253 PRK08149, PRK08149, ATP synthase SpaL; Validated. Length = 428 Score = 163 bits (414), Expect = 1e-40 Identities = 129/426 (30%), Positives = 209/426 (49%), Gaps = 29/426 (6%) Query: 12 RIQ-QIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLS 70 RIQ I+ A + V + + I + +++ +R +VV E+T+ + + GLS Sbjct: 12 RIQGPIIEAELPDVAIGEICEIRAGWHSNEVIARA--QVVGFQRERTILSL-IGNAQGLS 68 Query: 71 RGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIIS----SEKRAIHQPSPSYTEQ 126 R + TG ++V VGEA LG +++ G+ V+ A + SE+R I PSY E+ Sbjct: 69 RQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAER 128 Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 L TG++ ID + G ++G+F AG GKT L+ LI + + V + Sbjct: 129 RPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEH---SEADVFVIGLI 185 Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246 GER RE + + S R+ KC L+Y + R AL TVA Sbjct: 186 GERGREVTEFVESLRAS-----SRR-------EKCVLVYATSDFSSVDRCNAALVATTVA 233 Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK 306 E+FRDQG+ V+ F+D++ R+ +A +++ G +P+ GY +++ + L ER TL Sbjct: 234 EYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLA 293 Query: 307 GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEID 366 GSIT+ + + +++ DP + LD LSR+++ KG YPAID L S S + Sbjct: 294 GSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFG-Q 352 Query: 367 IVGQEHYDVARRVQEILQRYKSLQDIIAILG---MDELSEEDKLVVARARKLERFMSQPF 423 + +H +A +++L R + LQ I LG E ++ D+ + R LE F+ Q Sbjct: 353 VTDPKHRQLAAAFRKLLTRLEELQLFID-LGEYRRGENADNDRAMDKRP-ALEAFLKQDV 410 Query: 424 HVAESF 429 SF Sbjct: 411 AEKSSF 416 >gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated. Length = 432 Score = 157 bits (399), Expect = 5e-39 Identities = 118/390 (30%), Positives = 185/390 (47%), Gaps = 34/390 (8%) Query: 41 KGSRIVFEVVQHLGEKTVRC------------IAMSRTDGLSRGDCVIDTGTQITVPVGE 88 KG + V +GE V C + +T+ + GD V + +P G Sbjct: 36 KGPKAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGN 95 Query: 89 ATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQK 148 LG++++ GE ++++ I +K + P E+ + TGIK ID + Sbjct: 96 HLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGI 155 Query: 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208 G KIG+F G+GVGK+ L+ + N AKA +V + VGER RE D Sbjct: 156 GQKIGIFAGSGVGKSTLLGMIAKN-AKAD--INVISLVGERGREVKDFI----------- 201 Query: 209 PRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQ 268 RK G K ++ +E + R A ++AE+FRDQG +VL +D++ RF Sbjct: 202 -RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFAD 260 Query: 269 ANSEISALLGRIPSAVGYQSTLALE--MGELQERITTTLKGSITSVQAIYVPADDLTDPA 326 A + + +P +G + TL +E M +L ER T KGSIT + + V DDL P Sbjct: 261 ARRSVDIAVKELP--IGGK-TLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDLNGPV 317 Query: 327 PATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRY 386 P + LD VL R+++ YPAI LDS S ++E +IV H+ +A +++IL Y Sbjct: 318 PDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIME-EIVSPNHWQLANEMRKILSIY 376 Query: 387 KSLQDIIAILGMDELSEEDKLVVARARKLE 416 K ++ LG + + E+ + K+E Sbjct: 377 KE-NELYFKLGTIQENAENAYIFECKNKVE 405 >gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional. Length = 442 Score = 155 bits (392), Expect = 3e-38 Identities = 129/435 (29%), Positives = 208/435 (47%), Gaps = 37/435 (8%) Query: 7 TESVGRIQQIMG----AVVDVVFVNSLPPI----FSSLETSDKGSRIVFEVVQHLGEKTV 58 T VGRI +++G AVV V V + + L T G F + LGE T Sbjct: 21 TTVVGRITEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELT- 79 Query: 59 RCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQ--GAIIS-SEKRA 115 G+S VI TG + + G LGR++N +GEP+D + G + + E Sbjct: 80 ---------GVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYP 130 Query: 116 IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 I + P ++ +IL+TG++ ID + +G +IG+F GAGVGK+ L+ + N + Sbjct: 131 IFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEE 190 Query: 176 AHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGAR 235 A +V A +GER RE E I+ + G + ++ ++ R Sbjct: 191 AD--VNVIALIGERGRE----VREFIE--------GDLGEEGMKRSVIVVSTSDQSSQLR 236 Query: 236 SRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMG 295 A G +AE+FRDQG+ V+ +D++ RF +A E+ G P+ GY ++ + Sbjct: 237 LNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLP 296 Query: 296 ELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDP 355 +L ER + KG+IT+ + V DD+ +P + LD VLS +++ YPAID Sbjct: 297 KLLERSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDV 356 Query: 356 LDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE-EDKLVVARARK 414 L S S +L IV +E + + +E+L +YK+ + +I I S+ E + K Sbjct: 357 LASISRLLTA-IVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDK 415 Query: 415 LERFMSQPFHVAESF 429 L RF+ Q H ++ Sbjct: 416 LNRFLKQDIHEKTNY 430 >gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated. Length = 450 Score = 152 bits (387), Expect = 1e-37 Identities = 100/310 (32%), Positives = 159/310 (51%), Gaps = 22/310 (7%) Query: 92 GRIMNVIGEPVDDQGAIISSEKR-AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGG 150 GR++N +GEP+D G + + +I +P ++ + L TG++VID+ +P G Sbjct: 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQ 166 Query: 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-FAGVGERTREGNDLYHEMIDSKVNIDP 209 +IG+F G+GVGK+ L+ L A+A +V A VGER RE E ++ + D Sbjct: 167 RIGIFAGSGVGKSTLLAML----ARADAFDTVVIALVGERGRE----VREFLEDTLA-DN 217 Query: 210 RKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269 K + V + +E P R LT +AE+FRD+G++VL VD++ RF A Sbjct: 218 LKKAVAVVATS--------DESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHA 269 Query: 270 NSEISALLGRIPSAVGYQSTLALEMGELQERI--TTTLKGSITSVQAIYVPADDLTDPAP 327 E++ G P A GY ++ E+ L ER GSIT + ++ V DD DP Sbjct: 270 AREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVA 329 Query: 328 ATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYK 387 + LD VL R I+E+G YPA+DPL S S + ++ + R++ ++ R++ Sbjct: 330 DSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQR-KLVSRLKSMIARFE 388 Query: 388 SLQDIIAILG 397 +D+ I G Sbjct: 389 ETRDLRLIGG 398 >gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated. Length = 438 Score = 150 bits (380), Expect = 8e-37 Identities = 108/362 (29%), Positives = 174/362 (48%), Gaps = 21/362 (5%) Query: 36 LETSDKGSRIVFEVVQHLGEKTVRCIAM--SRTDGLSRGDCVIDTGTQITVPVGEATLGR 93 I EVV G K + M + ++ G V TG + V VG +G+ Sbjct: 46 HTKGGGDKAIKAEVV---GFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGLIGQ 102 Query: 94 IMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIG 153 +++ +GEP+D + Q P+ ++ + G++ ID + KG ++G Sbjct: 103 VLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVG 162 Query: 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNN 213 +F G+GVGK+ L M +I A +V A +GER RE E I+ ++ Sbjct: 163 IFAGSGVGKSTL-MGMIARNTSAD--LNVIALIGERGRE----VREFIE--------RDL 207 Query: 214 GSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEI 273 G + ++ ++P R + A T +AE+FRDQG +V+ +D++ R A EI Sbjct: 208 GPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREI 267 Query: 274 SALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTH 333 +G P+ GY ++ + +L ER T GSIT+ + V DD+ +P T Sbjct: 268 GLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGI 327 Query: 334 LDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDII 393 LD VL RQ++ KG YPAI+ L S S ++ IV EH + A R +E+L Y++ +D+I Sbjct: 328 LDGHFVLDRQLANKGQYPAINVLKSVSRVMN-HIVSPEHKEAANRFRELLSTYQNSEDLI 386 Query: 394 AI 395 I Sbjct: 387 NI 388 >gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional. Length = 441 Score = 149 bits (378), Expect = 2e-36 Identities = 104/363 (28%), Positives = 179/363 (49%), Gaps = 23/363 (6%) Query: 64 SRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSY 123 GLSRG VI G ++VPVG A LGR+++ +GEP+D G + E + P Sbjct: 78 GELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDP 137 Query: 124 TEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 + + L TG++++D + +G ++G+F AGVGK+ L+ +V Sbjct: 138 MSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG---TQCDVNVI 194 Query: 184 AGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 A +GER RE + + E+I + S V S + R++ A Sbjct: 195 ALIGERGREVRE-FIELI-----LGEDGMARSVVVCATS------DRSSIERAKAAYVAT 242 Query: 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT 303 +AE+FRD+G VL +D++ RF +A EI G P+ G+ ++ E+ L ER Sbjct: 243 AIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM 302 Query: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363 GSIT++ + + +DP LD +LSR+I+ + YPAID L S S ++ Sbjct: 303 GETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM 362 Query: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFM 419 +V +EH A R++++L +++ ++ ++ + G D +++E +A+ + F+ Sbjct: 363 P-QVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADE---AIAKIDAIRDFL 418 Query: 420 SQP 422 SQ Sbjct: 419 SQR 421 >gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated. Length = 451 Score = 146 bits (370), Expect = 1e-35 Identities = 111/395 (28%), Positives = 198/395 (50%), Gaps = 30/395 (7%) Query: 48 EVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGA 107 EV+ G+K V + + G++ G V+ +P+G + LGR+++ G +D +G Sbjct: 68 EVMGFSGDK-VFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGP 126 Query: 108 IISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIM 167 + + + + P+ + + + L GI+ I+ + +G ++GLF G GVGK+VL + Sbjct: 127 MKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVL-L 185 Query: 168 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ 227 ++ +A V +GER RE E I+ + G + ++ Sbjct: 186 GMMTRFTEAD--IIVVGLIGERGRE----VKEFIEHIL--------GEEGLKRSVVVASP 231 Query: 228 MNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQ 287 ++ P R R A+ +AE+FRD+G++VL +D++ RF QA EI+ +G P+ GY Sbjct: 232 ADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYP 291 Query: 288 STLALEMGELQERITTTLK--GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQIS 345 ++ ++ +L ER GSIT+ + DD DP ++ LD VLSR+++ Sbjct: 292 PSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLA 351 Query: 346 EKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDEL 401 E+G YPAID ++++ S + +V EH A+R +++ RY+ +D+I++ G D Sbjct: 352 EEGHYPAID-IEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGD-- 408 Query: 402 SEEDKLVVARARKLERFMSQ----PFHVAESFTGL 432 E L +AR L +F+ Q +A+S L Sbjct: 409 -PETDLAIARFPHLVQFLRQGLRENVSLAQSREQL 442 >gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated. Length = 442 Score = 145 bits (367), Expect = 3e-35 Identities = 114/403 (28%), Positives = 182/403 (45%), Gaps = 33/403 (8%) Query: 42 GSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEP 101 G + EVV G++ + + +G+ RG + V A LGR++N +GEP Sbjct: 51 GRPVPCEVVGFRGDRAL-LMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEP 109 Query: 102 VDDQGAII-SSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160 +D +G + + P P ++ L G++ ++ +G ++G+F G+GV Sbjct: 110 IDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGV 169 Query: 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSK 220 GK+VL+ L N SV +GER RE E + + + S V Sbjct: 170 GKSVLLSMLARNADAD---VSVIGLIGERGRE----VQEFLQDDLGPEGLAR--SVVVVA 220 Query: 221 CSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRI 280 S +EP R + A L +AE+FRDQG+DVL +D++ RF A EI G Sbjct: 221 TS------DEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEP 274 Query: 281 PSAVGYQSTLALEMGELQERI--TTTLKGSITSVQAIYVPADDLTDP-APATSFTHLDAT 337 P+ GY T+ E+ L ER +G+IT + + V DD +P A A LD Sbjct: 275 PTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDHNEPVADAVRGI-LDGH 333 Query: 338 TVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAI-- 395 V+ R I+E+G YPAI+ L S S + E + RR ++++ Y ++++I + Sbjct: 334 IVMERAIAERGRYPAINVLKSVSRTMP-GCNDPEENPLVRRARQLMATYADMEELIRLGA 392 Query: 396 --LGMDELSEEDKLVVARARKLERFMSQ----PFHVAESFTGL 432 G D +E + LE F+ Q +AE + L Sbjct: 393 YRAGSDPEVDE---AIRLNPALEAFLRQGKDEATSLAEGYARL 432 >gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated. Length = 444 Score = 144 bits (365), Expect = 5e-35 Identities = 102/324 (31%), Positives = 167/324 (51%), Gaps = 20/324 (6%) Query: 75 VIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILT 134 V G Q +PVG + LGR+++ +G P+D G I + ++ + H P + + L Sbjct: 88 VTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLD 147 Query: 135 TGIKVIDLISPYQKGGKIGLFGGAGVGKTVLI-MELINNVAKAHGGYSVFAGVGERTREG 193 G++ I+ + KG ++GLF G+GVGK+VL+ M A V VGER RE Sbjct: 148 VGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADV----IVVGLVGERGRE- 202 Query: 194 NDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQG 253 E I+ + + R + ++ + P R + T T+AE+FRDQG Sbjct: 203 ---VKEFIEEILGEEGRA--------RSVVVAAPADTSPLMRLKGCETATTIAEYFRDQG 251 Query: 254 QDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT--TLKGSITS 311 +VL +D++ R+ QA EI+ +G P+ GY ++ ++ L ER +GSIT+ Sbjct: 252 LNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITA 311 Query: 312 VQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQE 371 + DDL DP S LD VLSR++++ G YPAID S S ++ + ++ +E Sbjct: 312 FYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPM-VISEE 370 Query: 372 HYDVARRVQEILQRYKSLQDIIAI 395 H + RRV+++ Y+ +D+I+I Sbjct: 371 HLEAMRRVKQVYSLYQQNRDLISI 394 >gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN; Validated. Length = 433 Score = 144 bits (364), Expect = 5e-35 Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 17/330 (5%) Query: 66 TDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTE 125 T GL G V+ + VPVGEA LGR+++ G P+D + K P P+ Sbjct: 73 TIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMPPPAMVR 132 Query: 126 QSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185 Q L TGI+ ID ++ +G ++G+F GVGK+ L+ L N +V Sbjct: 133 QPI-TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN---APDADSNVLVL 188 Query: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 +GER RE E ID ++ + RK +C ++ + P R R T+ Sbjct: 189 IGERGRE----VREFIDFTLSEETRK--------RCVIVVATSDRPALERVRALFVATTI 236 Query: 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305 AE FRD G+ V+ D++ R+ +A EI+ G + Y + + L ER Sbjct: 237 AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE 296 Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365 KGSIT+ + V DD+ +P + LD VLSR+++E+G YPAID L + S + + Sbjct: 297 KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV 356 Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAI 395 + EH +A ++ L Y+ ++ +I I Sbjct: 357 -VTSHEHRQLAAILRRCLALYQEVELLIRI 385 >gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated. Length = 434 Score = 140 bits (354), Expect = 9e-34 Identities = 100/391 (25%), Positives = 181/391 (46%), Gaps = 26/391 (6%) Query: 36 LETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIM 95 +E+ D + I +VV + T + G+ G V + + +G++ LGR++ Sbjct: 44 IESVD-ETFIEAQVVGFDRDITY-LMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVI 101 Query: 96 NVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLF 155 N +GEP+D +G + S P ++ + L G+ I+ + KG ++GL Sbjct: 102 NGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLM 161 Query: 156 GGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGS 215 G+GVGK+VL + +I +A V +GER RE E I+ + + Sbjct: 162 AGSGVGKSVL-LGMITRYTQAD--VVVVGLIGERGRE----VKEFIEHSL--------QA 206 Query: 216 AVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA 275 A +K ++ +E P R + +A ++RD+G DVL VD++ R+ A EI+ Sbjct: 207 AGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL 266 Query: 276 LLGRIPSAVGYQSTLALEMGELQERI-TTTLKGSITSVQAIYVPADDLTDPAPATSFTHL 334 LG P+ GY + + L E ++ G++T++ + DD DP + L Sbjct: 267 SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVL 326 Query: 335 DATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIA 394 D VLSR+++E G YPAID S S + ++G + A +++ Y +++ +I Sbjct: 327 DGHIVLSRKLAEAGHYPAIDISQSISRCMS-QVIGSQQAKAASLLKQCYADYMAIKPLIP 385 Query: 395 ----ILGMDELSEEDKLVVARARKLERFMSQ 421 + G D ++++ V + +F+ Q Sbjct: 386 LGGYVAGADPMADQ---AVHYYPAITQFLRQ 413 >gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases. Length = 578 Score = 121 bits (305), Expect = 4e-28 Identities = 102/336 (30%), Positives = 155/336 (46%), Gaps = 38/336 (11%) Query: 116 IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 + P P Y E+ L TG +++D P KGG + G G GKTV +L AK Sbjct: 190 VRIPRP-YKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQL----AK 244 Query: 176 -AHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGA 234 + V+ G GER E D+ E + K DP+ G + + L+ N P A Sbjct: 245 WSDADIVVYIGCGERGNEMTDVLEEFPELK---DPK--TGKPLMERTVLIANTSNMPVAA 299 Query: 235 RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEM 294 R TG+T+AE+FRD G DV D+ R+ +A EIS L +P GY + LA + Sbjct: 300 REASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRL 359 Query: 295 GELQER--ITTTL-----KGSITSVQAIYVPADDLTDPAPATS------FTHLDATTVLS 341 E ER TL GS+T + A+ P D ++P + F LDA Sbjct: 360 AEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQR 419 Query: 342 RQISEKGIYPAIDPLDSNSSMLEI------DIVGQEHYDVARRVQEILQRYKSLQDIIAI 395 R +PAI+ L S S +++ + V + ++ ++LQ+ LQ+I+ + Sbjct: 420 RH------FPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQL 473 Query: 396 LGMDELSEEDKLVVARARKL-ERFMSQ-PFHVAESF 429 +G D L E KL++ AR + E F+ Q F +++ Sbjct: 474 VGPDALPERQKLILEVARMIREAFLQQNAFDPVDTY 509 Score = 30.5 bits (69), Expect = 0.89 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 26/105 (24%) Query: 10 VGRIQQIMGAVV-----------DVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTV 58 GRI ++ G +V +VV V ++ E+++ G+K Sbjct: 1 KGRIIRVSGPLVVADGMKGAQMYEVVKVGEE--------------GLIGEIIRIEGDKAF 46 Query: 59 RCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVD 103 + T G+ G+ V+ TG ++V +G LG I + + P+D Sbjct: 47 IQVYEE-TSGIKPGEPVVGTGAPLSVELGPGLLGSIYDGVQRPLD 90 >gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional. Length = 502 Score = 121 bits (305), Expect = 4e-28 Identities = 98/364 (26%), Positives = 164/364 (45%), Gaps = 34/364 (9%) Query: 2 TTKAKTESVGRIQQIMGAVVD-VVFVNSLPPI-FSSLETSDKGSRIVFEVVQHLGEKTVR 59 + +GR++ +V D + FV+ LP L + GSR +L E+ V Sbjct: 20 EPQPDAREIGRVE----SVGDGIAFVSGLPDAALDELLRFEGGSR---GFAFNLEEELVG 72 Query: 60 CIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQP 119 + + T + G V TG + VPVG+ LGR+++ +G P+D G + ++ +R + +P Sbjct: 73 AVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERP 132 Query: 120 SPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179 +P+ E+ L TGIKV+D + P +G + + G GKT + ++ I N K Sbjct: 133 APAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIIN-QKDSDV 191 Query: 180 YSVFAGVGERTREGNDLYHEMIDSKVN--IDPRKNNGSAVGSKCSLLYGQMNEPPGARSR 237 V+ +G++ S V I+ + +G+ +++ + ++PPG + Sbjct: 192 ICVYVAIGQKA------------SAVARVIETLREHGAL--EYTTVVVAEASDPPGLQYL 237 Query: 238 VALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGEL 297 G +AE+FRDQGQD L D++ + A E+S LL R P Y + L Sbjct: 238 APFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRL 297 Query: 298 QERITTTLK----GSITSVQAIYVPADDLTD--PAPATSFTHLDATTVLSRQISEKGIYP 351 ER GS+T++ I A +L+ P S T D L + G P Sbjct: 298 LERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISIT--DGQIYLDSDLFAAGQRP 355 Query: 352 AIDP 355 A+D Sbjct: 356 AVDV 359 >gnl|CDD|162170 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases. Length = 458 Score = 120 bits (302), Expect = 1e-27 Identities = 104/371 (28%), Positives = 169/371 (45%), Gaps = 26/371 (7%) Query: 66 TDGLSR-GDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYT 124 T GL G V TG + +PV E LGRI+N GEP+D I+ E+R I+ + Sbjct: 57 TTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPY 116 Query: 125 EQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS--- 181 + + TGI ID ++ +G K+ +F G+G+ L + I A G S Sbjct: 117 AREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESEFA 175 Query: 182 -VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 VFA +G E N + + G+ + + ++P R Sbjct: 176 VVFAAMGITYEEANFFMKDF----------EETGAL--ERAVVFLNLADDPAVERIVTPR 223 Query: 241 TGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQE 299 LT AE+ ++ VL + ++ + +A EISA +P GY + ++ + E Sbjct: 224 MALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYE 283 Query: 300 R--ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLD 357 R KGSIT + + +P DD+T P P + + VLSR++ KGIYP I+ L Sbjct: 284 RAGRVKGKKGSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLP 343 Query: 358 SNSSMLEIDI----VGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARAR 413 S S +++ I ++H DV+ ++ + L+ ++AI+G + LSE D+ + A Sbjct: 344 SLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFAD 403 Query: 414 KLE-RFMSQPF 423 E RF+ Q Sbjct: 404 LFERRFVRQGR 414 >gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated. Length = 455 Score = 115 bits (289), Expect = 3e-26 Identities = 88/315 (27%), Positives = 165/315 (52%), Gaps = 20/315 (6%) Query: 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLI 143 +P+G A LGR+++ G+P+D A + E A+ P + +++ +L TG++ I+ + Sbjct: 110 LPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINAL 169 Query: 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERTREGNDLYHEMID 202 +G ++GLF G+GVGK+VL+ +A+ + G +GER RE D ++ Sbjct: 170 LTVGRGQRMGLFAGSGVGKSVLL----GMMARYTQADVIVVGLIGERGREVKDFIENIL- 224 Query: 203 SKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDN 262 G+ ++ ++ + P R + A +AE FRD+GQ VL +D+ Sbjct: 225 -----------GAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDS 273 Query: 263 IFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK--GSITSVQAIYVPAD 320 + R+ A EI+ +G P+ GY ++ ++ L ER + GSIT+ + D Sbjct: 274 LTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGD 333 Query: 321 DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQ 380 D DP ++ LD VLSR+++E G YPAID ++++ S ++ ++HY R+ + Sbjct: 334 DQQDPIADSARAILDGHIVLSRRLAEAGHYPAID-IEASISRAMTALIDEQHYARVRQFK 392 Query: 381 EILQRYKSLQDIIAI 395 ++L ++ +D++++ Sbjct: 393 QLLSSFQRNRDLVSV 407 >gnl|CDD|162171 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. Length = 591 Score = 109 bits (275), Expect = 1e-24 Identities = 90/327 (27%), Positives = 161/327 (49%), Gaps = 36/327 (11%) Query: 116 IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175 + P P + + +LT G +V+D + P +GG + G G GKTV +++ Sbjct: 194 VRSPRPVTEKLPANTPLLT-GQRVLDALFPCVQGGTTAIPGAFGCGKTV--------ISQ 244 Query: 176 AHGGYS-----VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230 + YS V+ G GER E ++ + + + +D R+ ++ + +L+ N Sbjct: 245 SLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGRE---ESIMKRTTLVANTSNM 301 Query: 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTL 290 P AR TG+T+AE+FRD G +V D+ R+ +A EIS L +P+ GY + L Sbjct: 302 PVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 361 Query: 291 ALEMGELQERI-------TTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTV---L 340 + ER + +GS++ V A+ P D +D P TS T L V L Sbjct: 362 GARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSD--PVTSAT-LGIVQVFWGL 418 Query: 341 SRQISEKGIYPAIDPLDSNSS-MLEIDIVGQEHY----DVARRVQEILQRYKSLQDIIAI 395 ++++++ +P+++ L S S M ++ ++ Y + + +EILQ + L +I+ + Sbjct: 419 DKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQL 478 Query: 396 LGMDELSEEDKLVVARARKL-ERFMSQ 421 +G D L+E DK+ + A+ + E F+ Q Sbjct: 479 VGKDALAETDKITLEVAKLIKEDFLQQ 505 >gnl|CDD|179776 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional. Length = 586 Score = 107 bits (271), Expect = 4e-24 Identities = 124/402 (30%), Positives = 176/402 (43%), Gaps = 92/402 (22%) Query: 67 DGLSRGDC---VIDTGTQ---ITVPVGEATLGRIMNVIGE---PVDDQGAIISSEKRAIH 117 D + GD V +T + I VP G + G + ++ E VDD A++ E Sbjct: 128 DKVEAGDILGTVQETPSIEHKIMVPPGVS--GTVKEIVSEGDYTVDDTIAVLEDEDGEGV 185 Query: 118 -----------QPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLI 166 +P P Y E+ L TG +VID P KGG + G G GKTV Sbjct: 186 ELTMMQKWPVRRPRP-YKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQ 244 Query: 167 MELINNVAKAHGGYS-----VFAGVGERTREGNDLYHEMIDSKVN----IDPRKNNGSAV 217 +L AK ++ ++ G GER GN EM + IDP+ Sbjct: 245 HQL----AK----WADADIVIYVGCGER---GN----EMTEVLEEFPELIDPKTGR---- 285 Query: 218 GSKCSLLYGQM----------NEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 L M N P AR TG+T+AE++RD G DVL D+ R+ Sbjct: 286 ----PL----MERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWA 337 Query: 268 QANSEISALLGRIPSAVGYQSTLALEMGELQER--ITTTL---KGSITSVQAIYVPADDL 322 +A EIS L +P GY + LA + E ER TL +GS+T + A+ P D Sbjct: 338 EALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVSPPGGDF 397 Query: 323 TDPAPATSFTHLDATTV---LSRQISEKGIYPAIDPLDSNSSMLEIDIVGQ---EHY--D 374 ++ P T T L V L +++++ +PAI+ L S S L +D V E+ D Sbjct: 398 SE--PVTQNT-LRIVKVFWALDAELADRRHFPAINWLTSYS--LYLDQVAPWWEENVDPD 452 Query: 375 VARRVQE---ILQRYKSLQDIIAILGMDELSEEDKLV--VAR 411 E +LQR LQ+I+ ++G D L EED+L+ VAR Sbjct: 453 WRELRDEAMDLLQREAELQEIVRLVGPDALPEEDRLILEVAR 494 >gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated. Length = 434 Score = 108 bits (270), Expect = 5e-24 Identities = 112/425 (26%), Positives = 189/425 (44%), Gaps = 46/425 (10%) Query: 38 TSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNV 97 + K I+ EV+ +T +++S ++ G V+ ++ + + LGR+++ Sbjct: 47 SLSKSPPILAEVIG-FHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGRVLDG 105 Query: 98 IGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGG 157 G P+D + + + + + PS + I TGIK ID KG +IG+F Sbjct: 106 FGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSE 165 Query: 158 AGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSA 216 G GK+ L++ +AK + +V A +GER RE + I+ K +A Sbjct: 166 PGSGKS----SLLSTIAKGSKSTINVIALIGERGREVRE----------YIEQHKEGLAA 211 Query: 217 VGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276 + ++ +E + +T+AE+FRDQG VLF +D++ R+ A E++ Sbjct: 212 --QRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALA 269 Query: 277 LGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAI-YVP--ADDLTDPAPATSFTH 333 G SA Y +++ + E ER KGSIT++ AI + P D TD + Sbjct: 270 RGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAILHYPNHPDIFTDYLKSL---- 325 Query: 334 LDATTVLSRQISEKGIY-PAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDI 392 LD L+ Q K + P ID L S S + HY A ++ +L+ Y DI Sbjct: 326 LDGHFFLTPQ--GKALASPPIDILTSLSRSAR-QLALPHHYAAAEELRSLLKAYHEALDI 382 Query: 393 IAILGMDELSEEDKLVVARARKL----ERFMSQPFHVAESFTGLPGKFVSLEETIRGFKG 448 I LG ++ L RA KL ++F+SQP + +L T++ + Sbjct: 383 IQ-LGAYVPGQDAHL--DRAVKLLPSIKQFLSQPL----------SSYCALHNTLKQLEA 429 Query: 449 LVQGE 453 L++ E Sbjct: 430 LLKHE 434 >gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase. Length = 497 Score = 106 bits (265), Expect = 2e-23 Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 37/314 (11%) Query: 55 EKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKR 114 E V + + L GD V TG + VPVG+ LGR+++ +G P+D G + SS + Sbjct: 68 EDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRL 127 Query: 115 AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 I +P+P +++ L TG+KVID + P +G + + G GKT + ++ I N Sbjct: 128 PIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILN-Q 186 Query: 175 KAHGGYSVFAGVGERT----------REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLL 224 K ++ +G+R RE + + ++ + Sbjct: 187 KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIV----------------------V 224 Query: 225 YGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAV 284 + N+PPG + ++ EHF +QG+DVL D++ + +A E+S LL R P Sbjct: 225 VTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGRE 284 Query: 285 GYQSTLALEMGELQERITTTLK----GSITSVQAIYVPADDLTDPAPATSFTHLDATTVL 340 + + L ER T + GS+T++ I A +++ P + D L Sbjct: 285 AFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYL 344 Query: 341 SRQISEKGIYPAID 354 S + E G+ PA+D Sbjct: 345 SPTLFELGVLPAVD 358 >gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. Length = 501 Score = 104 bits (261), Expect = 6e-23 Identities = 113/438 (25%), Positives = 181/438 (41%), Gaps = 64/438 (14%) Query: 49 VVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAI 108 + +L E +V + M + G V TG + VPVG+ LGR++N +G+P+D +G I Sbjct: 61 IALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPI 120 Query: 109 ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIME 168 S E R I + +P E+ + L TGIK ID + P +G + + G GKT + ++ Sbjct: 121 DSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAID 180 Query: 169 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLL--YG 226 I N K Y V+ +G++ S V L +G Sbjct: 181 TIIN-QKDSDVYCVYVAIGQK------------------------ASTVAQVVRKLEEHG 215 Query: 227 QM----------NEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276 M ++ + TG T+AE+FRD G+ L D++ + A +IS L Sbjct: 216 AMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLL 275 Query: 277 LGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYVPADDLTDPAPATSFT 332 L R P Y + L ER GS+T++ I A D++ P + Sbjct: 276 LRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVIS 335 Query: 333 HLDATTVLSRQISEKGIYPAIDPLDSNS---SMLEIDIVGQEHYDVARRVQEILQRYKSL 389 D L + GI PAI+ S S +I + Q VA ++ L +Y+ L Sbjct: 336 ITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQ----VAGSLRLELAQYREL 391 Query: 390 QDIIAILGMDELSEEDKLVVARARKLERFMSQ----PFHVAE----SFTGLPG--KFVSL 439 + + D L E K + R ++L + Q P V E + G G + + Sbjct: 392 -EAFSQFASD-LDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPV 449 Query: 440 EETIRGFKGLVQGEYDHL 457 ++ +R F+ Q D+L Sbjct: 450 DK-VRKFE---QELLDYL 463 >gnl|CDD|179779 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional. Length = 460 Score = 104 bits (261), Expect = 7e-23 Identities = 113/385 (29%), Positives = 178/385 (46%), Gaps = 52/385 (13%) Query: 66 TDGLSRGDC-VIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIH-QP-SPS 122 T GL D V TG + +PV E LGRI + +G P+D II ++ I+ P +P Sbjct: 59 TTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPV 118 Query: 123 YTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS- 181 E + + TGI ID ++ +G K+ +F G+G+ L ++ AK G Sbjct: 119 AREYPEE--FIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQ-AKVLGEEEN 175 Query: 182 ---VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGAR--- 235 VFA +G E N ++ + G + + ++P R Sbjct: 176 FAVVFAAMGITFEEANFF----------MEDFEETG--ALERSVVFLNLADDPAIERILT 223 Query: 236 SRVALTGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEM 294 R+ALT AE+ ++G VL + ++ + +A EISA +P GY + ++ Sbjct: 224 PRMALT---AAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDL 280 Query: 295 GELQER--ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDAT-------TVLSRQIS 345 + ER KGSIT + + +P DD+T P P D T VLSR++ Sbjct: 281 ATIYERAGRIKGKKGSITQIPILTMPDDDITHPIP-------DLTGYITEGQIVLSRELH 333 Query: 346 EKGIYPAIDPLDSNSSMLEIDIVG-----QEHYDVARRVQEILQRYKSLQDIIAILGMDE 400 KGIYP ID L S S +++ D +G ++H DVA ++ R K L+++ AI+G + Sbjct: 334 RKGIYPPIDVLPSLSRLMK-DGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVGEEA 392 Query: 401 LSEEDKLVVARARKLE-RFMSQPFH 424 LSE D+ + A E F++Q F Sbjct: 393 LSERDRKYLKFADAFEREFVNQGFD 417 >gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional. Length = 1017 Score = 100 bits (249), Expect = 1e-21 Identities = 75/256 (29%), Positives = 119/256 (46%), Gaps = 23/256 (8%) Query: 182 VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 ++ G GER E D+ E K DP G + + L+ N P AR T Sbjct: 686 IYIGCGERGNEMTDVLEEFPKLK---DP--KTGKPLMERTVLIANTSNMPVAAREASIYT 740 Query: 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI 301 G+T+AE+FRD G DV D+ R+ +A EIS L +P GY + LA ++ E ER Sbjct: 741 GITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERA 800 Query: 302 TTTLK-------GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAID 354 + GS++ + A+ P D ++P + + L ++ + +PAI+ Sbjct: 801 GRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAIN 860 Query: 355 PLDSNSSMLEIDIVGQ--------EHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDK 406 L S S L +D V E + + E+LQ+ LQ+I+ I+G D L E ++ Sbjct: 861 WLTSYS--LYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERER 918 Query: 407 LVVARARKL-ERFMSQ 421 ++ AR L E ++ Q Sbjct: 919 AILLVARMLREDYLQQ 934 Score = 38.1 bits (88), Expect = 0.005 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 87 GEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPY 146 GE T+ ++ + P + + ++ + P Y E+ L TG +VID P Sbjct: 166 GEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224 Query: 147 QKGGKIGLFGGAGVGKTV----LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 200 KGG + G G GK V LI+ + K Y + G G++T EGN+ + E+ Sbjct: 225 AKGGTAAIPGPFGSGKCVDGDTLILTKEFGLIKIKDLYEILDGKGKKTVEGNEEWTEL 282 >gnl|CDD|162169 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. Length = 466 Score = 82.1 bits (203), Expect = 3e-16 Identities = 92/373 (24%), Positives = 163/373 (43%), Gaps = 44/373 (11%) Query: 78 TGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIH-QP----SPSYTEQSTDASI 132 TG + PV E LGR+ N G+P+D +++ + I+ QP + Y E+ + Sbjct: 70 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEE-----M 124 Query: 133 LTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 192 + TGI ID+++ +G KI +F AG+ + ++ AG+ + + Sbjct: 125 IQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ-----------AGLVKLPTK 173 Query: 193 GNDLYHE------MIDSKVNIDPRK-------NNGSAVGSKCSLLYGQMNEPPGARSRVA 239 HE VN++ + NGS + L N+P R Sbjct: 174 DVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSM--ERVCLFLNLANDPTIERIITP 231 Query: 240 LTGLTVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQ 298 LT AE+ Q + VL + ++ + A E+SA +P G+ + ++ + Sbjct: 232 RLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIY 291 Query: 299 ERI--TTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPL 356 ER GSIT + + +P DD+T P P + + + RQ+ + IYP I+ L Sbjct: 292 ERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVL 351 Query: 357 DSNSSMLEIDI----VGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARA 412 S S +++ I ++H DV+ ++ K +Q + A++G + LS ED L + Sbjct: 352 PSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFL 411 Query: 413 RKLER-FMSQPFH 424 K E+ F++Q + Sbjct: 412 DKFEKNFIAQGPY 424 >gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional. Length = 436 Score = 76.6 bits (189), Expect = 1e-14 Identities = 82/318 (25%), Positives = 132/318 (41%), Gaps = 21/318 (6%) Query: 12 RIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSR 71 +I I G V+ V +++E D S V L V T G+S Sbjct: 7 KITDITGNVITVEAEGVGYGELATVERKDGSS---LAQVIRLDGDKVTLQVFGGTRGIST 63 Query: 72 GDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDAS 131 GD V+ G + V E+ LGR N G+P+D G + E I PS + ++ Sbjct: 64 GDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDG-GPELEGEPIEIGGPSVNPVKRIVPRE 122 Query: 132 ILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 191 ++ TGI +ID+ + + KI +F +G L+ + +A + G+G Sbjct: 123 MIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARI---ALQAEADIIILGGMGLT-- 177 Query: 192 EGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR- 250 D Y D+ +N G+ + + ++PP V L VAE F Sbjct: 178 --FDDYLFFKDTF------ENAGAL--DRTVMFIHTASDPPVECLLVPDMALAVAEKFAL 227 Query: 251 DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER-ITTTLKGSI 309 + + VL + ++ F A EIS + +IPS GY +L ++ E+ + GSI Sbjct: 228 EGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFEDGGSI 287 Query: 310 TSVQAIYVPADDLTDPAP 327 T + +P DD+T P P Sbjct: 288 TIIAVTTMPGDDVTHPVP 305 >gnl|CDD|181753 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated. Length = 502 Score = 67.8 bits (167), Expect = 6e-12 Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 2/105 (1%) Query: 46 VFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQ 105 V+ + +L E V + + + + GD V TG + VPVGEA LGR++N +G+P+D + Sbjct: 59 VYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGK 118 Query: 106 GAIISSEKRAIHQPSPSYTE-QSTDASILTTGIKVIDLISPYQKG 149 G I ++E R + + +P + +S L TGIK ID + P +G Sbjct: 119 GPIEATETRPVERKAPGVIDRKSVHEP-LQTGIKAIDAMIPIGRG 162 Score = 35.8 bits (84), Expect = 0.022 Identities = 14/41 (34%), Positives = 22/41 (53%) Query: 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIP 281 G + E+F D G+D L D++ + A ++S LL R P Sbjct: 241 AGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPP 281 >gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional. Length = 574 Score = 61.6 bits (149), Expect = 4e-10 Identities = 77/352 (21%), Positives = 143/352 (40%), Gaps = 41/352 (11%) Query: 61 IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPV-----DDQGAIISSEKR- 114 I M + G V+ TG + +PVG LG+++N +G V A++ SE+ Sbjct: 94 ILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTL 153 Query: 115 -AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN- 172 + +P+ +S L TG K +D + P +G + + G GKT + + I N Sbjct: 154 GKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQ 213 Query: 173 ------VAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 + + S++ +G+R + H ++ S + +++ Sbjct: 214 VRINQQILSKNAVISIYVSIGQRCSNVARI-HRLLRSYGAL-----------RYTTVMAA 261 Query: 227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGY 286 EP G + +G+T+ E+F ++G+ L D++ + A +IS LL R P Y Sbjct: 262 TAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAY 321 Query: 287 QSTLALEMGELQERITTTLK----GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSR 342 + L ER GS+T++ + ++D+T + D L Sbjct: 322 PGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDT 381 Query: 343 QISEKGIYPAIDPLDSNSSMLEIDIVGQEHYD-----VARRVQEILQRYKSL 389 ++ G PA++ L + VG + VA +++ IL Y+ L Sbjct: 382 KLFTGGQRPAVN------IGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRKL 427 >gnl|CDD|183622 PRK12608, PRK12608, transcription termination factor Rho; Provisional. Length = 380 Score = 44.7 bits (106), Expect = 6e-05 Identities = 72/313 (23%), Positives = 119/313 (38%), Gaps = 61/313 (19%) Query: 65 RTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYT 124 R L GD V L R+ +V G + + +P + Sbjct: 55 RRFNLRTGDVV---EGVARPRERYRVLVRVDSVNGTDPEKLAR-----RPHFDDLTPLHP 106 Query: 125 EQ----STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 + T + L+ +V+DL++P KG + + GKTVL+ ++ VA H Sbjct: 107 RERLRLETGSDDLSM--RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEV 164 Query: 181 SVFAG-VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239 + + ER E D+ R G S + PP RVA Sbjct: 165 HLMVLLIDERPEEVTDM------------RRSVKGEVYAS-------TFDRPPDEHIRVA 205 Query: 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQA-NSEISALLGRIPSAVGYQSTLALEMGELQ 298 L A+ +QG+DV+ +D++ R +A N+E+ + GR S G AL+ Sbjct: 206 ELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVES-SGRTLS--GGVDARALQR---P 259 Query: 299 ERITTTLK-----GSITSVQAIYVP----ADDLTDPAPATSFTHLDAT----TVLSRQIS 345 +R+ + GS+T + V D++ F T VL R+++ Sbjct: 260 KRLFGAARNIEEGGSLTIIATALVDTGSRMDEVI-------FEEFKGTGNMEIVLDRELA 312 Query: 346 EKGIYPAIDPLDS 358 +K ++PAID S Sbjct: 313 DKRVFPAIDIAKS 325 >gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. Members of this family differ in the specificity of RNA binding. Length = 415 Score = 40.1 bits (94), Expect = 0.001 Identities = 83/381 (21%), Positives = 144/381 (37%), Gaps = 85/381 (22%) Query: 62 AMSRTDGLSRGDCVIDTGTQITVP-VGEA--TLGRIMNVIGEPVDDQGAIISSEKRAIHQ 118 + R L GD + G QI P GE L ++ +V G+ + K + Sbjct: 84 SQIRRFNLRTGDTI--EG-QIRSPKEGERYFALLKVESVNGDDPEK-------AKNRVLF 133 Query: 119 PS--PSYTEQ----STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 + P Y + T L+T +V+DL +P KG + + GKTVL+ ++ Sbjct: 134 ENLTPLYPNERLRLETSTEDLST--RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA 191 Query: 173 VAKAHGG-YSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEP 231 + + H + + ER E D M R G V S +EP Sbjct: 192 ITRNHPEVELIVLLIDERPEEVTD----MQ--------RSVKGEVVAS-------TFDEP 232 Query: 232 PGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLA 291 +VA + A+ + +DV+ +D+I R +A + ++ G++ S G + A Sbjct: 233 ASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSG-GVDAN-A 290 Query: 292 L-------------EMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHL-DAT 337 L E G GS+T + + D F + Sbjct: 291 LHRPKRFFGAARNIEEG-----------GSLTIIATALIDTGSRMDEVIFEEFKGTGNME 339 Query: 338 TVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 L R+++++ I+PAID S + E+ ++ E LQ+ L+ II+ Sbjct: 340 LHLDRKLADRRIFPAIDIKKSGTRKEEL-LLTPEE----------LQKIWVLRKIIS--P 386 Query: 398 MDELSEEDKLVVARARKLERF 418 MD + + L+ KL++ Sbjct: 387 MDSIEAMEFLI----SKLKKT 403 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 39.7 bits (92), Expect = 0.002 Identities = 14/57 (24%), Positives = 19/57 (33%) Query: 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSK 204 G I + G G GKT L L + GG G + L ++ K Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGK 57 >gnl|CDD|181809 PRK09376, rho, transcription termination factor Rho; Provisional. Length = 416 Score = 34.7 bits (81), Expect = 0.055 Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 339 VLSRQISEKGIYPAIDPLDS 358 L R+++EK I+PAID S Sbjct: 342 HLDRKLAEKRIFPAIDINRS 361 >gnl|CDD|181398 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional. Length = 289 Score = 32.1 bits (73), Expect = 0.31 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 10/52 (19%) Query: 395 ILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGF 446 IL + +L+E +KL L RF +AESFT PG+FV + TI G Sbjct: 10 ILEVYDLTEREKLF------LLRFEDP--ELAESFTFKPGQFVQV--TIPGV 51 >gnl|CDD|168831 PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed. Length = 264 Score = 31.7 bits (72), Expect = 0.45 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 245 VAEHFRDQGQDVLF---FVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMG-ELQER 300 V HFRD V + R +A +E+S LGR P+A S LA E+G + +E Sbjct: 105 VRRHFRDNSWSVKVPRRLKELHLRLGRATAELSQRLGRAPTA----SELAAELGMDREEV 160 Query: 301 ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPL 356 + + GS + +I D A A + T D L + + + + P + L Sbjct: 161 VEGLVAGSAYNTLSIDSGGGSGDDDARAIADTLGDVDAGLDQIENREALRPLLAAL 216 >gnl|CDD|181771 PRK09302, PRK09302, circadian clock protein KaiC; Reviewed. Length = 509 Score = 30.6 bits (70), Expect = 0.99 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 135 TGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 TGI+ D I+ KG + G AG GKT+ ++ + N K VF Sbjct: 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVF 65 >gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho; Provisional. Length = 672 Score = 30.6 bits (70), Expect = 1.0 Identities = 7/15 (46%), Positives = 13/15 (86%) Query: 340 LSRQISEKGIYPAID 354 L R++++K I+PA+D Sbjct: 590 LDRKLADKRIFPAVD 604 Score = 27.9 bits (63), Expect = 6.4 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%) Query: 128 TDASILTTGIKVIDLISPYQKG 149 T+ LTT +VIDLI P KG Sbjct: 397 TEPKKLTT--RVIDLIMPIGKG 416 >gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional. Length = 559 Score = 30.0 bits (67), Expect = 1.3 Identities = 17/51 (33%), Positives = 22/51 (43%) Query: 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 193 + P ++GG I L G G GKT I +L A H V + R G Sbjct: 344 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG 394 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 29.8 bits (67), Expect = 1.5 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 14/116 (12%) Query: 204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNI 263 PR+ S + K + PG+ S VA+ V++ + D+ V N Sbjct: 6 VAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDK------AVVNG 59 Query: 264 FRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPA 319 FT A+ E LLG P+ G + + +G +T+ G IT V + VPA Sbjct: 60 LSFTVASGECFGLLG--PNGAGKSTIARMILG-----MTSPDAGKIT-VLGVPVPA 107 >gnl|CDD|182685 PRK10735, tldD, protease TldD; Provisional. Length = 481 Score = 29.4 bits (66), Expect = 2.3 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 343 QISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVAR----RVQEI 382 + +Y ++DPL S S ++DI+ + VAR RVQE+ Sbjct: 113 AVEHSPLYTSLDPLQSMSREEKLDIL-RRVDKVARAADKRVQEV 155 >gnl|CDD|184293 PRK13742, PRK13742, replication protein; Provisional. Length = 245 Score = 28.8 bits (64), Expect = 3.2 Identities = 37/168 (22%), Positives = 56/168 (33%), Gaps = 16/168 (9%) Query: 250 RDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVG---YQSTLALEMGELQERITTTLK 306 RDQ + + FVD I S+ + + Y L E + I LK Sbjct: 33 RDQKRMLYLFVDQI-----RKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALK 87 Query: 307 GSITSVQAIYVPADDLTDPAPATSF------THLDATTVLSRQISEKGIYPAIDPLDSNS 360 Y P +D D SF H + + S I+ I P L + Sbjct: 88 SFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI-PFFIGLQNRF 146 Query: 361 SMLEIDIVGQEHYDVARRVQEILQRY-KSLQDIIAILGMDELSEEDKL 407 + + + A R+ E L +Y K I L +D + E +L Sbjct: 147 TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 >gnl|CDD|183521 PRK12422, PRK12422, chromosomal replication initiation protein; Provisional. Length = 445 Score = 28.6 bits (64), Expect = 3.4 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 152 IGLFGGAGVGKTVLIMELINNVAKAHG 178 I LFG G GKT L+ ++ + ++ G Sbjct: 144 IYLFGPEGSGKTHLMQAAVHALRESGG 170 >gnl|CDD|181420 PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase; Reviewed. Length = 298 Score = 28.5 bits (64), Expect = 4.4 Identities = 8/29 (27%), Positives = 11/29 (37%) Query: 113 KRAIHQPSPSYTEQSTDASILTTGIKVID 141 KR H S + +A I+ I D Sbjct: 207 KRVTHTTIASILARRYNALIIPVFIFNDD 235 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 27.8 bits (62), Expect = 5.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Query: 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186 G +IGL G G GK+ LI L +A G + G+ Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI 375 >gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. Length = 864 Score = 27.8 bits (62), Expect = 5.6 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Query: 9 SVGRIQQIMGAVVDVVFVNSLP---PIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSR 65 S G+ + + A+VD++F PI S T G +V H+ ++T + + M+ Sbjct: 455 SQGKPRNVARAIVDMLFPAEDDGRIPIVSV--TGTNGKTTTTRLVAHILKQTGKVVGMTT 512 Query: 66 TDGLSRGDCVIDTG 79 TDG+ G +++ G Sbjct: 513 TDGVYIGKYLVEKG 526 >gnl|CDD|150772 pfam10136, SpecificRecomb, Site-specific recombinase. Members of this family of bacterial proteins are found in various putative site-specific recombinase transmembrane proteins. Length = 647 Score = 27.9 bits (63), Expect = 6.0 Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 312 VQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAI 353 + + P + D LDA TVL+ Q++ G+ P + Sbjct: 132 AELLAEPPEPDDDAVARWRAELLDAITVLAYQVAATGLEPEL 173 >gnl|CDD|148833 pfam07454, SpoIIP, Stage II sporulation protein P (SpoIIP). This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation. Engulfment in Bacillus subtilis is mediated by two complementary systems: the first includes the proteins SpoIID, SpoIIM and SpoIIP (DMP) which carry out the engulfment, and the second includes the SpoIIQ-SpoIIIAGH (Q-AH) zipper, that recruits other proteins to the septum in a second-phase of the engulfment. The course of events follows as the incorporation firstly of SpoIIB into the septum during division to serve directly or indirectly as a landmark for localising SpoIIM and then SpoIIP and SpoIID to the septum. SpoIIP and SpoIID interact together to form part of the DMP complex. SpoIIP itself has been identified as an autolysin with peptidoglycan hydrolase activity. Length = 258 Score = 27.6 bits (62), Expect = 6.8 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 19/64 (29%) Query: 339 VLSRQISEKGIYPAI------DPLDSNSSMLEIDIVGQEHYDVARR-VQEILQRYKSLQD 391 L++++ + GI I D D N S Y +R V+++L+ ++ Sbjct: 105 RLAQELEKYGI-GVIHDKTVHDLPDYNQS-----------YKRSRETVKKLLKENPDIKA 152 Query: 392 IIAI 395 +I I Sbjct: 153 VIDI 156 >gnl|CDD|180566 PRK06451, PRK06451, isocitrate dehydrogenase; Validated. Length = 412 Score = 27.5 bits (61), Expect = 8.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 150 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182 G IG+ GGA +G T + E I+ A + G +V Sbjct: 311 GNIGMLGGANIGDTGGMFEAIHGTAPKYAGKNV 343 >gnl|CDD|178630 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional. Length = 697 Score = 27.5 bits (61), Expect = 8.2 Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 189 RTREGNDLYHEMIDSKVNID 208 + E LY+EM DS V+ID Sbjct: 305 YSEEALCLYYEMRDSGVSID 324 >gnl|CDD|181654 PRK09109, motC, flagellar motor protein; Reviewed. Length = 246 Score = 27.2 bits (61), Expect = 8.9 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%) Query: 361 SMLEIDIVGQEHYDV-ARRVQEILQRYKSLQDII-AILG----MDELSEEDKL 407 S+LE++I QEH D+ A +V E + Y II A++G M+ L++ +L Sbjct: 126 SVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMGLIHVMENLADPSQL 178 >gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 Score = 27.3 bits (61), Expect = 9.0 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 +FG G GKT L+ L+ + K GG ++FA Sbjct: 439 IFGPTGSGKTTLLNFLLAQMQKY-GGMTIFA 468 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.135 0.374 Gapped Lambda K H 0.267 0.0733 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,692,319 Number of extensions: 512796 Number of successful extensions: 1398 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1282 Number of HSP's successfully gapped: 101 Length of query: 478 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 381 Effective length of database: 3,898,497 Effective search space: 1485327357 Effective search space used: 1485327357 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (26.5 bits)