BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (478 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/478 (100%), Positives = 478/478 (100%) Query: 1 MTTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRC 60 MTTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRC Sbjct: 1 MTTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRC 60 Query: 61 IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPS 120 IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPS Sbjct: 61 IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPS 120 Query: 121 PSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 PSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY Sbjct: 121 PSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180 Query: 181 SVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 SVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL Sbjct: 181 SVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240 Query: 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER 300 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER Sbjct: 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER 300 Query: 301 ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360 ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS Sbjct: 301 ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360 Query: 361 SMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMS 420 SMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMS Sbjct: 361 SMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMS 420 Query: 421 QPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478 QPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI Sbjct: 421 QPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 25/334 (7%) Query: 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSE--KRAIHQPSPSYTEQ 126 +S GD V G + + GR++N +G+P+D ++ + + + P+ Q Sbjct: 81 ISLGDLVFHWG-RFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQ 139 Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG- 185 + TGI+VID+ +P G +IG+F G+G+GK+ L+ + A++ V Sbjct: 140 RVEKG-FKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL----SMFARSDCFDKVIISL 194 Query: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 VGER RE + + + + K ++ +E P R LT +T+ Sbjct: 195 VGERGREVREFIEDYLGDNLK-------------KSVVVVATSDESPILRKMAPLTAVTI 241 Query: 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI--TT 303 AE+F +G +VL +D+I RF + EI+ G +P A GY +++ E+ L ERI + Sbjct: 242 AEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE 301 Query: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363 KG+IT+V ++ V D+ DP + + LD VL+R ++E+G YP +DPL S S + Sbjct: 302 KEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLA 361 Query: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 + E V+ + ++ R++ +DI I G Sbjct: 362 DKAWSADEKKLVS-SLTHLIHRFEETRDIRLIGG 394 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 23/297 (7%) Query: 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQST 128 +S GD V TG + VPVG LGR+++ +G P+D +G I ++ +P ++ + Sbjct: 82 ISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQS 141 Query: 129 DASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YS 181 L+TGIK ID + P +G + + G GKT +I++ N +H Y Sbjct: 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYC 201 Query: 182 VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 ++ +G++ R + + ++ + + S ++ ++P + Sbjct: 202 IYVAIGQK-RSSVARFVKALEDRGAL-----------SYSIVVVASASDPAPMQLLAPFA 249 Query: 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER- 300 G + E+FRD G L D++ + A ++S LL R P Y + L ER Sbjct: 250 GCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERA 309 Query: 301 --ITTTL-KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAID 354 ++ L GS+T++ I +D++ P + D L ++ +GI PAI+ Sbjct: 310 AKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAIN 366 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 25/225 (11%) Query: 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDL 196 +VIDLI+P KG + + GKT+L+ + +++ K H Y + + ER E D+ Sbjct: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM 222 Query: 197 YHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDV 256 R G + S +E +VA + A+ + G DV Sbjct: 223 Q------------RSVQGEVISS-------TFDESAARHVQVAEMVIAKAKCLVEYGLDV 263 Query: 257 LFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK--GSITSVQA 314 + +D+I R +A + + G+I G AL+ + +K GS+T + Sbjct: 264 VILLDSITRLCRAYNVLMPSSGKI--LTGGVDANALQRPKRFFGAARNIKEGGSLTIIGT 321 Query: 315 IYVPADDLTDPAPATSFTHL-DATTVLSRQISEKGIYPAIDPLDS 358 V D F ++ VL R+I++K I+PA+D + S Sbjct: 322 ALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS 366 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 26.9 bits (58), Expect = 0.68, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 7/115 (6%) Query: 65 RTDGLSRGD--CVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPS 122 R D + RG ++D I + L +I PV+D + + I Q PS Sbjct: 198 RVDMVQRGHNFAIVDEVDSIFIDEARTPL-----IISGPVEDHSDLYRTIDSIIIQLHPS 252 Query: 123 YTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177 E + K + I G + GG + V I+ LINN K+H Sbjct: 253 DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSH 307 >gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] Length = 833 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 15/17 (88%) Query: 196 LYHEMIDSKVNIDPRKN 212 L+ + ++SK+N+DP+KN Sbjct: 117 LFLQGVNSKLNVDPKKN 133 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 133 LTTGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177 ++TGI+ +D + Q+ I + G G+GKT L + NVA A+ Sbjct: 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY 247 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 309 ITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIY 350 I ++ + P D L D +H T + S Q+SEKGIY Sbjct: 86 IDKLKPLLSPEDILLDGGN----SHFCDTQIRSLQLSEKGIY 123 >gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter asiaticus str. psy62] Length = 378 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 5/34 (14%) Query: 375 VARRVQEILQRYKSLQDIIAILGMDELSEEDKLV 408 +A+ +QE+LQ K L+D+I D+ +EE + V Sbjct: 336 LAKAIQELLQEVKELRDMI-----DKQNEEHQDV 364 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 138 KVIDLIS-PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 KV+D I+ + KIG+ G G GK+ I+ ++ + K + G + A Sbjct: 20 KVLDDINLSFYPDAKIGILGPNGAGKST-ILRIMAGIDKEYNGEAWLA 66 >gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 305 Score = 23.9 bits (50), Expect = 6.4, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 265 RFTQANSEISALLGRIPSAVGYQS 288 RFT N I + G IP +G+ S Sbjct: 134 RFTPQNIVIGGIAGAIPPMIGWAS 157 >gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 436 Score = 23.9 bits (50), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%) Query: 79 GTQITVP-----VGEATLGRIMNVIGEPVDDQGAI---ISSEKRAIHQPSP 121 T+I VP V EAT+G + IGE V + G I + ++K + PSP Sbjct: 20 ATKILVPSLGESVNEATVGTWLKEIGESV-EIGEILVELETDKVTVEVPSP 69 >gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 200 K + G G+GKT L ++ + G S+ T+ N L+ E+ Sbjct: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 >gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62] Length = 200 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 383 LQRYKSLQDIIAILGMDELSEEDKLVVARARKLER 417 +Q+Y S+ + I IL E +K++ R RK+ R Sbjct: 114 IQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIAR 148 >gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust. Identities = 11/44 (25%), Positives = 21/44 (47%) Query: 136 GIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179 G +++ ++ +I F G GKT+ + L+NN + H Sbjct: 219 GSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAW 262 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 23.5 bits (49), Expect = 8.1, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 11/70 (15%) Query: 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKV-NI 207 G IG+ G G GKT L ++L+ K G+ G +L ID K +I Sbjct: 310 GECIGIVGPNGAGKTTL-LKLLTGKIKPDCGFITL---------GTNLKIATIDQKREDI 359 Query: 208 DPRKNNGSAV 217 DP K+ S + Sbjct: 360 DPDKSLASYL 369 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 23.1 bits (48), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 126 QSTDASILTTGIKVIDLISPYQKGGKI-GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 QS ++ + V+D ++ G+I GL G +G GK+ L + +I + G +F Sbjct: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL-LRIIAGLVSPSSGQVLFK 77 Query: 185 G 185 G Sbjct: 78 G 78 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.374 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,737 Number of Sequences: 1233 Number of extensions: 11818 Number of successful extensions: 50 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 23 length of query: 478 length of database: 328,796 effective HSP length: 77 effective length of query: 401 effective length of database: 233,855 effective search space: 93775855 effective search space used: 93775855 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)