BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta
[Candidatus Liberibacter asiaticus str. psy62]
         (478 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 478

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/478 (100%), Positives = 478/478 (100%)

Query: 1   MTTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRC 60
           MTTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRC
Sbjct: 1   MTTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRC 60

Query: 61  IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPS 120
           IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPS
Sbjct: 61  IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPS 120

Query: 121 PSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180
           PSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY
Sbjct: 121 PSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180

Query: 181 SVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240
           SVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL
Sbjct: 181 SVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240

Query: 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER 300
           TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER
Sbjct: 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER 300

Query: 301 ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360
           ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS
Sbjct: 301 ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360

Query: 361 SMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMS 420
           SMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMS
Sbjct: 361 SMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMS 420

Query: 421 QPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478
           QPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI
Sbjct: 421 QPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAEVI 478


>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 438

 Score =  132 bits (333), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 25/334 (7%)

Query: 69  LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSE--KRAIHQPSPSYTEQ 126
           +S GD V   G +  +       GR++N +G+P+D   ++   +     + +  P+   Q
Sbjct: 81  ISLGDLVFHWG-RFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQ 139

Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG- 185
             +     TGI+VID+ +P   G +IG+F G+G+GK+ L+    +  A++     V    
Sbjct: 140 RVEKG-FKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL----SMFARSDCFDKVIISL 194

Query: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245
           VGER RE  +   + +   +              K  ++    +E P  R    LT +T+
Sbjct: 195 VGERGREVREFIEDYLGDNLK-------------KSVVVVATSDESPILRKMAPLTAVTI 241

Query: 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI--TT 303
           AE+F  +G +VL  +D+I RF  +  EI+   G +P A GY +++  E+  L ERI  + 
Sbjct: 242 AEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE 301

Query: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363
             KG+IT+V ++ V  D+  DP   +  + LD   VL+R ++E+G YP +DPL S S + 
Sbjct: 302 KEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLA 361

Query: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397
           +      E   V+  +  ++ R++  +DI  I G
Sbjct: 362 DKAWSADEKKLVS-SLTHLIHRFEETRDIRLIGG 394


>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 509

 Score = 94.4 bits (233), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 23/297 (7%)

Query: 69  LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQST 128
           +S GD V  TG  + VPVG   LGR+++ +G P+D +G I   ++      +P   ++ +
Sbjct: 82  ISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQS 141

Query: 129 DASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YS 181
               L+TGIK ID + P  +G +  + G    GKT +I++   N   +H         Y 
Sbjct: 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYC 201

Query: 182 VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241
           ++  +G++ R     + + ++ +  +           S   ++    ++P   +      
Sbjct: 202 IYVAIGQK-RSSVARFVKALEDRGAL-----------SYSIVVVASASDPAPMQLLAPFA 249

Query: 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER- 300
           G  + E+FRD G   L   D++ +   A  ++S LL R P    Y   +      L ER 
Sbjct: 250 GCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERA 309

Query: 301 --ITTTL-KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAID 354
             ++  L  GS+T++  I    +D++   P    +  D    L  ++  +GI PAI+
Sbjct: 310 AKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAIN 366


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 44.7 bits (104), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 25/225 (11%)

Query: 138 KVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDL 196
           +VIDLI+P  KG +  +      GKT+L+  + +++ K H   Y +   + ER  E  D+
Sbjct: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM 222

Query: 197 YHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDV 256
                        R   G  + S         +E      +VA   +  A+   + G DV
Sbjct: 223 Q------------RSVQGEVISS-------TFDESAARHVQVAEMVIAKAKCLVEYGLDV 263

Query: 257 LFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK--GSITSVQA 314
           +  +D+I R  +A + +    G+I    G     AL+  +        +K  GS+T +  
Sbjct: 264 VILLDSITRLCRAYNVLMPSSGKI--LTGGVDANALQRPKRFFGAARNIKEGGSLTIIGT 321

Query: 315 IYVPADDLTDPAPATSFTHL-DATTVLSRQISEKGIYPAIDPLDS 358
             V      D      F    ++  VL R+I++K I+PA+D + S
Sbjct: 322 ALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS 366


>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 890

 Score = 26.9 bits (58), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 65  RTDGLSRGD--CVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPS 122
           R D + RG    ++D    I +      L     +I  PV+D   +  +    I Q  PS
Sbjct: 198 RVDMVQRGHNFAIVDEVDSIFIDEARTPL-----IISGPVEDHSDLYRTIDSIIIQLHPS 252

Query: 123 YTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177
             E       +    K  + I     G  +   GG    + V I+ LINN  K+H
Sbjct: 253 DYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSH 307


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 26.2 bits (56), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 15/17 (88%)

Query: 196 LYHEMIDSKVNIDPRKN 212
           L+ + ++SK+N+DP+KN
Sbjct: 117 LFLQGVNSKLNVDPKKN 133


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 25.4 bits (54), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 133 LTTGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177
           ++TGI+ +D  +   Q+   I + G  G+GKT L   +  NVA A+
Sbjct: 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY 247


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 475

 Score = 25.0 bits (53), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 309 ITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIY 350
           I  ++ +  P D L D       +H   T + S Q+SEKGIY
Sbjct: 86  IDKLKPLLSPEDILLDGGN----SHFCDTQIRSLQLSEKGIY 123


>gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 378

 Score = 24.3 bits (51), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 5/34 (14%)

Query: 375 VARRVQEILQRYKSLQDIIAILGMDELSEEDKLV 408
           +A+ +QE+LQ  K L+D+I     D+ +EE + V
Sbjct: 336 LAKAIQELLQEVKELRDMI-----DKQNEEHQDV 364


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 23.9 bits (50), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 138 KVIDLIS-PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
           KV+D I+  +    KIG+ G  G GK+  I+ ++  + K + G +  A
Sbjct: 20  KVLDDINLSFYPDAKIGILGPNGAGKST-ILRIMAGIDKEYNGEAWLA 66


>gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 305

 Score = 23.9 bits (50), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 265 RFTQANSEISALLGRIPSAVGYQS 288
           RFT  N  I  + G IP  +G+ S
Sbjct: 134 RFTPQNIVIGGIAGAIPPMIGWAS 157


>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 436

 Score = 23.9 bits (50), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)

Query: 79  GTQITVP-----VGEATLGRIMNVIGEPVDDQGAI---ISSEKRAIHQPSP 121
            T+I VP     V EAT+G  +  IGE V + G I   + ++K  +  PSP
Sbjct: 20  ATKILVPSLGESVNEATVGTWLKEIGESV-EIGEILVELETDKVTVEVPSP 69


>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 23.5 bits (49), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 200
           K  +  G G+GKT L   ++  +     G S+       T+  N L+ E+
Sbjct: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128


>gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 200

 Score = 23.5 bits (49), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 383 LQRYKSLQDIIAILGMDELSEEDKLVVARARKLER 417
           +Q+Y S+ + I IL      E +K++  R RK+ R
Sbjct: 114 IQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIAR 148


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 429

 Score = 23.5 bits (49), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 136 GIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179
           G +++  ++      +I  F   G GKT+ +  L+NN  + H  
Sbjct: 219 GSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAW 262


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 23.5 bits (49), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKV-NI 207
           G  IG+ G  G GKT L ++L+    K   G+            G +L    ID K  +I
Sbjct: 310 GECIGIVGPNGAGKTTL-LKLLTGKIKPDCGFITL---------GTNLKIATIDQKREDI 359

Query: 208 DPRKNNGSAV 217
           DP K+  S +
Sbjct: 360 DPDKSLASYL 369


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 23.1 bits (48), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 126 QSTDASILTTGIKVIDLISPYQKGGKI-GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
           QS     ++  + V+D ++     G+I GL G +G GK+ L + +I  +     G  +F 
Sbjct: 19  QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL-LRIIAGLVSPSSGQVLFK 77

Query: 185 G 185
           G
Sbjct: 78  G 78


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,737
Number of Sequences: 1233
Number of extensions: 11818
Number of successful extensions: 50
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 23
length of query: 478
length of database: 328,796
effective HSP length: 77
effective length of query: 401
effective length of database: 233,855
effective search space: 93775855
effective search space used: 93775855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)